Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

16681296 .. 16683718

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGGAGAAGAAGACAGAATCAACCAACAAGAATGTTAAGAAGGCCAATCTATTGGACCACCACTCGATCAAGCACATCCTTGACGAATCCGTCTCCGATATCGTTACGAGCCGTGGCTATAAGGAGGATGTGAGATTGAGCAACCTCAAACTGATTTTGGGAACGATTATCATCGTTGTTGCTCTTGTTGCTCAATTCTACAACAAGAAATTCCCTGAGAACAGGGATTTTTTGATTGGATGCATCGCATTGTATGTAGTGTTGAATGCGGTGTTGCAGCTGATTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCTCTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCTCAGCTGGGAAGTCAGTTCAGCTCACCAAAAGTGTCACCCAATGGTTCACGAAAGATGGAGTTCTTGTTGAGGGTTTATTCTGGAAAGACGTAGAAGCACTAATCAAGAACTATGCAGAAGAAGAACCAAAGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

192

Amino Acids

21.64

Weight (kDa)

8.96

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	24 - 181	2.2e-42	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	346, 416
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	2 cut(s)	293, 398
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	268, 372
AluBI	AGCT	3 cut(s)	283, 440, 457
AluI	AGCT	3 cut(s)	283, 440, 457
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	346, 416
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	5 cut(s)	313, 337, 397, 451, 463
AvaII	GGWCC	1 cut(s)	58
AxyI	CCTNAGG	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	416, 485
BceAI	ACGGC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmsI	GCATC	2 cut(s)	233, 255
BpiI	GAAGAC	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	358
Bse21I	CCTNAGG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	3 cut(s)	78, 136, 248
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	3 cut(s)	210, 324, 450
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmI	GAATGC	2 cut(s)	274, 313
BsnI	GGCC	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	69, 338, 391, 421
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	3 cut(s)	211, 325, 449
BspPI	GGATC	2 cut(s)	346, 416
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	4 cut(s)	69, 338, 391, 421
Bst4CI	ACNGT	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	291
BstDEI	CTNAG	4 cut(s)	219, 297, 333, 436
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	78, 136, 248
BstKTI	GATC	4 cut(s)	72, 341, 394, 424
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	4 cut(s)	69, 338, 391, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	78, 136, 248
BtsIMutI	CAGTG	2 cut(s)	351, 421
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	292, 397
CviJI	RGCY	6 cut(s)	47, 114, 120, 283, 440, 457
CviKI_1	RGCY	6 cut(s)	47, 114, 120, 283, 440, 457
CviQI	GTAC	2 cut(s)	292, 397
DdeI	CTNAG	4 cut(s)	219, 297, 333, 436
DpnI	GATC	4 cut(s)	71, 340, 393, 423
DpnII	GATC	4 cut(s)	69, 338, 391, 421
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	248
Esp3I	CGTCTC	1 cut(s)	100
FaiI	YATR	3 cut(s)	123, 258, 549
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	3 cut(s)	65, 143, 255
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	47
HinfI	GANTC	4 cut(s)	20, 89, 286, 384
HphI	GGTGA	5 cut(s)	313, 337, 397, 451, 463
Hpy166II	GTNNAC	4 cut(s)	294, 321, 399, 483
Hpy188I	TCNGA	2 cut(s)	100, 391
Hpy188III	TCNNGA	4 cut(s)	332, 484, 517, 541
Hpy8I	GTNNAC	4 cut(s)	294, 321, 399, 483
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	3 cut(s)	246, 280, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	219, 297, 333, 436
HpySE526I	ACGT	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	69, 338, 391, 421
LpnPI	CCDG	8 cut(s)	211, 231, 339, 345, 361, 394, 426, 502
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	233, 255
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	2 cut(s)	106, 469
MalI	GATC	4 cut(s)	71, 340, 393, 423
MboI	GATC	4 cut(s)	69, 338, 391, 421
MboII	GAAGA	6 cut(s)	22, 25, 316, 360, 566, 569
MluCI	AATT	2 cut(s)	197, 212
MnlI	CCTC	5 cut(s)	121, 158, 328, 339, 499
Mph1103I	ATGCAT	1 cut(s)	248
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	2 cut(s)	283, 440
Mva1269I	GAATGC	2 cut(s)	274, 313
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	4 cut(s)	69, 338, 391, 421
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	248
PctI	GAATGC	2 cut(s)	274, 313
PfeI	GAWTC	4 cut(s)	20, 89, 286, 384
PkrI	GCNGC	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	58
PvuII	CAGCTG	2 cut(s)	283, 440
RsaI	GTAC	2 cut(s)	293, 398
RsaNI	GTAC	2 cut(s)	292, 397
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	4 cut(s)	69, 338, 391, 421
Sau96I	GGNCC	1 cut(s)	58
SetI	ASST	6 cut(s)	150, 285, 326, 442, 459, 528
SfaNI	GCATC	2 cut(s)	233, 255
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	2 cut(s)	197, 212
SsiI	CCGC	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	2 cut(s)	68, 411
TasI	AATT	2 cut(s)	197, 212
TatI	WGTACW	2 cut(s)	291, 396
TfiI	GAWTC	4 cut(s)	20, 89, 286, 384
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	358, 421
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	358, 421
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.