Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

29156720 .. 29159239

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1214300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGCAATGTGAGGCTGTTTCTGGGCACCATCATCATCGCAATCGCTCTCTTCGCTCAGTTTTACAAGAAGAAGTTCCCCGAAAACCGAGATTTTCTCATCCTCTGCATCGTCTTATATCCTAGTTTATCTTGTTACTTGTTCTTCAATGTGCTGTTGCAGCTGATCATATTCACCAAGGAGAAGAATGCCATTCTCTTCACGTATCCTCCCGCTGATTCGTTCACAAGCACTGGATTGGTGGTCTCTTCCAAATTGCCAAGATTCTCTGATATGTACTCTCTTGTGATAGCAAGTTCAGACCCCAAATCGATTTCTGCAAATCAACCAGCGCAGTTCACCAAGAATGTTACTCGGTTCACCAAGGACGGAGTTTTGGTGGGGGGCCTCTTCTGGAAAGATGTCGAAGCACTTATAAACGAATATCAGAGAGAACCAAAGAAGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

151

Amino Acids

17.12

Weight (kDa)

9.6

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	2 - 140	4e-24	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	3 cut(s)	166, 331, 352
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	38
BciVI	GTATCC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	28, 386
BmsI	GCATC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
Bsa29I	ATCGAT	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	177, 363
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 363, 393
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	177, 363
BseGI	GGATG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	1 cut(s)	387
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	387
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	28, 386
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	177, 363
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	177, 363
Bst6I	CTCTTC	5 cut(s)	56, 203, 253, 395, 437
BstBAI	YACGTR	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 160
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	387
BsuTUI	ATCGAT	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	231
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	277
CviJI	RGCY	3 cut(s)	16, 163, 387
CviKI_1	RGCY	3 cut(s)	16, 163, 387
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	5 cut(s)	56, 203, 253, 395, 437
EarI	CTCTTC	5 cut(s)	56, 203, 253, 395, 437
Eco130I	CCWWGG	2 cut(s)	177, 363
Eco31I	GGTCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	177, 363
ErhI	CCWWGG	2 cut(s)	177, 363
FaiI	YATR	4 cut(s)	118, 170, 275, 416
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	2 cut(s)	218, 264
HphI	GGTGA	3 cut(s)	166, 331, 352
Hpy166II	GTNNAC	3 cut(s)	225, 339, 360
Hpy188I	TCNGA	3 cut(s)	271, 301, 429
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	3 cut(s)	225, 339, 360
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	108, 160, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 160
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	203
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	165
LpnPI	CCDG	4 cut(s)	8, 219, 342, 379
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	134, 349
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	7 cut(s)	43, 82, 136, 190, 196, 240, 382
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	254
MnlI	CCTC	5 cut(s)	6, 113, 219, 398, 438
MroXI	GAANNNNTTC	1 cut(s)	74
MspA1I	CMGCKG	2 cut(s)	163, 215
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	53, 160
NdeII	GATC	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	28, 386
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	218, 264
PkrI	GCNGC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	204
PsiI	TTATAA	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	28, 386
PspPI	GGNCC	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	2 cut(s)	165, 206
SfaNI	GCATC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	177, 363
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	311, 405
TasI	AATT	1 cut(s)	254
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	218, 264
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	160
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.