Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Forward (+)

34919962 .. 34922218

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G392100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGGAGACGAAGGCCGAGAGTAAGAGCAAAAACCCTAAAAAGGCCAATCTGTCAGATCACAGCTCCATCAAGCACCTTCTCGACGAGTCTGTCTCCGAGATTGTTAAGAGCCGCGGATATGTGGAGAATACGAGGTTAAGTAACTTGAAGTTGTTGATTGGAGCCATTGTCATAATCATTGCTCTATTTGCTCAGTTCTACAACAAGAAATTTCCAGAGAACCGAGACTTCCTGATTGGATGCATTGCATCATATCCTTTTTACATGGTCTGTTTCATCCTTGACTCTGGCAAGTATATCATCGTCAATGGGATATTACAGGTGGTTTCATACACTAAGGAGAAAAATGCAATCTTGTTCACTCATCCTCCTGTGGGAGCCTTCAGCACTGGGTTGGTGGTGTCTTCCAAATTACCAAGATTTTCTGACTTGTACACACTTACAGTAGCAAGTGCGGATCCAAAATCGATATCTGCAAACAAACCGGTGGAATTCACGAAGAGTGTTACTCAGTGGTTTACCAAGGATGGAGTATTGGTGGAAGGCCTGTTCTGGAAGGAAGTAGATGGACTGATAAACGATTATGCAAGAGAACCCAAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

205

Amino Acids

22.79

Weight (kDa)

9.27

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	115, 117, 458
AclWI	GGATC	2 cut(s)	455, 468
AcsI	RAATTY	2 cut(s)	212, 494
AcuI	CTGAAG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	43, 377
AgeI	ACCGGT	1 cut(s)	487
AgsI	TTSAA	1 cut(s)	151
AloI	GAACNNNNNNTCC	2 cut(s)	536, 568
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw26I	GTCTC	3 cut(s)	2, 100, 222
AlwI	GGATC	2 cut(s)	455, 468
AoxI	GGCC	3 cut(s)	15, 45, 547
ApoI	RAATTY	2 cut(s)	212, 494
AsiGI	ACCGGT	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	399
BccI	CCATC	3 cut(s)	77, 524, 563
BcoDI	GTCTC	3 cut(s)	2, 100, 222
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	166, 382, 462
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	233, 260
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 496, 528
Bsa29I	ATCGAT	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	115, 525
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	6 cut(s)	156, 186, 355, 385, 525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 377
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	2 cut(s)	180, 246
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	115, 525
BseGI	GGATG	4 cut(s)	248, 279, 367, 535
BseLI	CCNNNNNNNGG	2 cut(s)	43, 377
BseMI	GCAATG	2 cut(s)	180, 246
BseMII	CTCAG	2 cut(s)	209, 527
BseNI	ACTGG	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	17, 47, 549
BshTI	ACCGGT	1 cut(s)	487
BshVI	ATCGAT	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	488
BslI	CCNNNNNNNGG	2 cut(s)	43, 377
BsmAI	GTCTC	3 cut(s)	2, 100, 222
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	3 cut(s)	17, 47, 549
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	58, 460
BspACI	CCGC	3 cut(s)	115, 117, 458
BspANI	GGCC	3 cut(s)	17, 47, 549
BspCNI	CTCAG	2 cut(s)	208, 526
BspDI	ATCGAT	1 cut(s)	470
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	166, 382, 462
BspPI	GGATC	2 cut(s)	455, 468
BspQI	GCTCTTC	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	180, 246
BsrFI	RCCGGY	1 cut(s)	487
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	115, 525
BssMI	GATC	2 cut(s)	58, 460
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	497, 599
BstAUI	TGTACA	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	195, 339, 513
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	4 cut(s)	248, 279, 367, 535
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	61, 463
BstMAI	GTCTC	3 cut(s)	2, 100, 222
BstMBI	GATC	2 cut(s)	58, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu15I	ATCGAT	1 cut(s)	470
BsuRI	GGCC	3 cut(s)	17, 47, 549
BsuTUI	ATCGAT	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	4 cut(s)	248, 279, 367, 535
BtsIMutI	CAGTG	2 cut(s)	390, 521
Cfr10I	RCCGGY	1 cut(s)	487
Cfr42I	CCGCGG	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	436
CspAI	ACCGGT	1 cut(s)	487
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	7 cut(s)	17, 47, 66, 114, 167, 383, 549
CviKI_1	RGCY	7 cut(s)	17, 47, 66, 114, 167, 383, 549
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	195, 339, 513
DpnI	GATC	2 cut(s)	60, 462
DpnII	GATC	2 cut(s)	58, 460
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	497, 599
EarI	CTCTTC	2 cut(s)	497, 599
Eco130I	CCWWGG	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	494
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	1 cut(s)	271
FaiI	YATR	7 cut(s)	123, 176, 256, 269, 300, 334, 588
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	4 cut(s)	255, 266, 354, 542
Fsp4HI	GCNGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	17, 47, 549
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	2 cut(s)	89, 287
HpaII	CCGG	1 cut(s)	488
Hpy166II	GTNNAC	3 cut(s)	363, 438, 522
Hpy188I	TCNGA	4 cut(s)	7, 58, 100, 430
Hpy188III	TCNNGA	5 cut(s)	83, 218, 235, 499, 556
Hpy8I	GTNNAC	3 cut(s)	363, 438, 522
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	5 cut(s)	7, 89, 394, 539, 553
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	5 cut(s)	246, 251, 353, 479, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	3 cut(s)	195, 339, 513
Hsp92II	CATG	1 cut(s)	271
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	58, 460
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	3 cut(s)	71, 164, 380
LpnPI	CCDG	9 cut(s)	231, 248, 276, 308, 378, 387, 501, 541, 563
LweI	GCATC	2 cut(s)	233, 260
MaeIII	GTNAC	2 cut(s)	143, 508
MalI	GATC	2 cut(s)	60, 462
MboI	GATC	2 cut(s)	58, 460
MboII	GAAGA	2 cut(s)	399, 514
MflI	RGATCY	1 cut(s)	460
MluCI	AATT	3 cut(s)	212, 413, 494
MlyI	GAGTC	2 cut(s)	98, 281
MnlI	CCTC	2 cut(s)	129, 381
Mph1103I	ATGCAT	1 cut(s)	248
MseI	TTAA	2 cut(s)	108, 140
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	488
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	2 cut(s)	58, 460
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	166, 382, 462
NmeAIII	GCCGAG	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	549
PciSI	GCTCTTC	1 cut(s)	599
PinAI	ACCGGT	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	2 cut(s)	97, 281
PpsI	GAGTC	2 cut(s)	97, 281
PspN4I	GGNNCC	3 cut(s)	166, 382, 462
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SacII	CCGCGG	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	108, 140
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	2 cut(s)	58, 460
SchI	GAGTC	2 cut(s)	98, 281
SetI	ASST	4 cut(s)	68, 81, 140, 327
SfaNI	GCATC	2 cut(s)	233, 260
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	212, 413, 494
SseBI	AGGCCT	1 cut(s)	549
SsiI	CCGC	3 cut(s)	115, 117, 458
StuI	AGGCCT	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	84, 470
TasI	AATT	3 cut(s)	212, 413, 494
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	108, 140
Tru9I	TTAA	2 cut(s)	108, 140
TscAI	CASTG	2 cut(s)	397, 521
TspDTI	ATGAA	2 cut(s)	268, 321
TspRI	CASTG	2 cut(s)	397, 521
XapI	RAATTY	2 cut(s)	212, 494
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.