Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Forward (+)

8837049 .. 8838891

Gene Structure 1843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027132

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTGTTTTATCTTTGACTCTGGCAAGTATGTGGTGTTGAATGGGATATTGCAGCTTATTATATACGTGAAGGAGAAGAATGCCATCCTCTTCACTTATCCTCCAAAGGATTCCTTCACAAGCACTGGACTGGTGGTCTCTTCCAAACTTCCAAGATTCTCTGATATGTACACACTTGAGATAGCAAGTGCAGACCCCAAATCTATTTCTGCAAATCCACCAGTACAGTTTACCAAAAGTGTCACCAAGTGGTTCACCAAGGACGGAATTTTGGTGGAGGGCCTCTTCTGGAAAGACGTTGAAGCGCTGATCAACGACTACCAGAAAGAACCAAAGAAGGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

116

Amino Acids

12.99

Weight (kDa)

8.95

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	10 - 105	2.5e-20	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	170, 225
AfeI	AGCGCT	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	40, 302
AhdI	GACNNNNNGTC	1 cut(s)	134
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	142
Aor51HI	AGCGCT	1 cut(s)	306
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	235, 247
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	308
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmeRI	GACNNNNNGTC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	130, 135, 221
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseNI	ACTGG	3 cut(s)	130, 135, 221
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	130, 135, 221
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	3 cut(s)	95, 145, 290
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	169, 224
CviJI	RGCY	2 cut(s)	55, 282
CviKI_1	RGCY	2 cut(s)	55, 282
CviQI	GTAC	2 cut(s)	169, 224
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
DraIII	CACNNNGTG	1 cut(s)	249
DriI	GACNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	95, 145, 290
Eam1105I	GACNNNNNGTC	1 cut(s)	134
EarI	CTCTTC	3 cut(s)	95, 145, 290
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	142
Eco47III	AGCGCT	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaiI	YATR	4 cut(s)	30, 62, 64, 167
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	53
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	3 cut(s)	17, 110, 156
HphI	GGTGA	2 cut(s)	235, 247
Hpy166II	GTNNAC	3 cut(s)	171, 231, 255
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	3 cut(s)	171, 231, 255
HpyAV	CCTTC	3 cut(s)	64, 124, 331
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	2 cut(s)	66, 297
HpyCH4V	TGCA	3 cut(s)	52, 191, 212
HpySE526I	ACGT	2 cut(s)	66, 297
HspAI	GCGC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	309
LpnPI	CCDG	6 cut(s)	6, 111, 116, 234, 274, 335
Lsp1109I	GCAGC	1 cut(s)	64
MaeII	ACGT	2 cut(s)	66, 297
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	4 cut(s)	82, 88, 132, 277
MluCI	AATT	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	4 cut(s)	98, 111, 271, 293
Mva1269I	GAATGC	1 cut(s)	85
NdeII	GATC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	110, 156
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	280
RsaI	GTAC	2 cut(s)	170, 225
RsaNI	GTAC	2 cut(s)	169, 224
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	11
SetI	ASST	3 cut(s)	57, 69, 300
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	2 cut(s)	69, 300
TasI	AATT	1 cut(s)	267
TatI	WGTACW	2 cut(s)	168, 223
TfiI	GAWTC	2 cut(s)	110, 156
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	241
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.