Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

60038605 .. 60039810

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG415900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGTTTAATCTTTGACTCTGGCAAGTATATTGTCATCAGTGGGGTGCTACAGCTGATCTCCTACATGAAGGAGAAAAATGCAATATTGTTTACTCATCCTCCCGTGGGATCCTTTAGTACTGGGTTGGTGGTGTCTTCCAAATTACCAAGATTTTCTGACTTGTACACTCTTACAATAGCAAGTGCAGATCCAAAATCAATTTCTGCAAATAAACCGGTGGAATTCACAAAGAGTGTTACTAAGTGGTTTACCAAGGATGGAGTATTGGTGGAAGGCTTGCTTTGGAAGGAAGTAGATGGACTAATAAATGATTATGCAAGAGAACCAAAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

114

Amino Acids

12.65

Weight (kDa)

9.21

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	10 - 104	6.6e-19	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	105, 118, 185
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	2 cut(s)	121, 167
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AlwI	GGATC	3 cut(s)	105, 118, 185
ApoI	RAATTY	1 cut(s)	224
AsiGI	ACCGGT	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	129
BccI	CCATC	2 cut(s)	254, 293
BfmI	CTRYAG	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	105, 255
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	105, 255
BseGI	GGATG	2 cut(s)	97, 265
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	57, 110, 190
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	3 cut(s)	105, 118, 185
BspQI	GCTCTTC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	105, 255
BssMI	GATC	3 cut(s)	57, 110, 190
BssT1I	CCWWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	97, 265
BstKTI	GATC	3 cut(s)	60, 113, 193
BstMBI	GATC	3 cut(s)	57, 110, 190
BstSFI	CTRYAG	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	110, 190
BstYI	RGATCY	2 cut(s)	110, 190
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	97, 265
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	120, 166
CspAI	ACCGGT	1 cut(s)	217
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	2 cut(s)	55, 279
CviKI_1	RGCY	2 cut(s)	55, 279
CviQI	GTAC	2 cut(s)	120, 166
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	59, 112, 192
DpnII	GATC	3 cut(s)	57, 110, 190
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	30, 68, 318
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	1 cut(s)	66
FokI	GGATG	2 cut(s)	84, 272
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	93, 168, 252
Hpy188I	TCNGA	1 cut(s)	160
Hpy8I	GTNNAC	3 cut(s)	93, 168, 252
HpyAV	CCTTC	3 cut(s)	64, 269, 283
HpyCH4V	TGCA	4 cut(s)	83, 188, 209, 320
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	57, 110, 190
LguI	GCTCTTC	1 cut(s)	329
LpnPI	CCDG	3 cut(s)	6, 108, 231
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	59, 112, 192
MboI	GATC	3 cut(s)	57, 110, 190
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	2 cut(s)	110, 190
MluCI	AATT	3 cut(s)	143, 201, 224
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	57, 110, 190
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	217
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	112
PsuI	RGATCY	2 cut(s)	110, 190
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	121, 167
RsaNI	GTAC	2 cut(s)	120, 166
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	57, 110, 190
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	1 cut(s)	11
SetI	ASST	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	143, 201, 224
SspI	AATATT	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	255
TasI	AATT	3 cut(s)	143, 201, 224
TatI	WGTACW	2 cut(s)	119, 165
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.