Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002895.1

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

7910 .. 9862

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002895.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgcaagagacaaaagacgcgagcagcaagcccaaaaaccctaagaaggcgaacctctcagatcacagttccatcaagcacctcctcgacgagtccgtctccgagattgttacgagtcggggatatgtggaggataccaagttaagtaacttgaagttgttgattggaaccattgtgataaccattgctctatttgctcagttctacaagaagaaatttcctgaaaaccagtacttcctgattggatgcattctggtctcctacatgaaggagaaaaatgcaatattgttcactcatcctcccgtgggatcctttagtactgggttggtggtgtcttccaaattaccaagattttctgacttgtacactcttacaatagcaagtgcagatccaaaatcaatttctgcaaataaaccggtggaattcacaaagagtgttactaagtggtttaccaaggatggagttttggtggaaggcttgctgtggaaggaagttgatggactaataaatgattatgcaagagaaccaaagaagagcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

180

Amino Acids

20.12

Weight (kDa)

9.35

Isoelectric Point (pI)

24.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	20
AclWI	GGATC	3 cut(s)	303, 316, 383
AcsI	RAATTY	2 cut(s)	215, 422
AfaI	GTAC	3 cut(s)	233, 319, 365
AfiI	CCNNNNNNNGG	2 cut(s)	46, 305
AgeI	ACCGGT	1 cut(s)	415
AgsI	TTSAA	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
Alw26I	GTCTC	3 cut(s)	2, 103, 262
AlwI	GGATC	3 cut(s)	303, 316, 383
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	2 cut(s)	215, 422
AsiGI	ACCGGT	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	80, 452, 491
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	2, 103, 262
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmcAI	AGTACT	2 cut(s)	233, 319
BmiI	GGNNCC	2 cut(s)	169, 310
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	303, 453
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	4 cut(s)	283, 313, 453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 305
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	229, 325
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	303, 453
BseGI	GGATG	3 cut(s)	251, 295, 463
BseLI	CCNNNNNNNGG	2 cut(s)	46, 305
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	72, 212
BseNI	ACTGG	2 cut(s)	229, 325
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	46, 305
BsmAI	GTCTC	3 cut(s)	2, 103, 262
BsmBI	CGTCTC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	61, 308, 388
BspCNI	CTCAG	2 cut(s)	71, 211
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	169, 310
BspPI	GGATC	3 cut(s)	303, 316, 383
BspQI	GCTCTTC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	229, 325
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	303, 453
BssMI	GATC	3 cut(s)	61, 308, 388
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	22, 29, 479
BstDEI	CTNAG	4 cut(s)	42, 58, 198, 441
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	251, 295, 463
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	64, 311, 391
BstMAI	GTCTC	3 cut(s)	2, 103, 262
BstMBI	GATC	3 cut(s)	61, 308, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	2 cut(s)	308, 388
BstYI	RGATCY	2 cut(s)	308, 388
BsuI	GTATCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	251, 295, 463
Cac8I	GCNNGC	3 cut(s)	22, 29, 479
Cfr10I	RCCGGY	1 cut(s)	415
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	232, 318, 364
CspAI	ACCGGT	1 cut(s)	415
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	2 cut(s)	31, 477
CviKI_1	RGCY	2 cut(s)	31, 477
CviQI	GTAC	3 cut(s)	232, 318, 364
DdeI	CTNAG	4 cut(s)	42, 58, 198, 441
DpnI	GATC	3 cut(s)	63, 310, 390
DpnII	GATC	3 cut(s)	61, 308, 388
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	126, 266, 516
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	3 cut(s)	258, 282, 470
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	268
HinfI	GANTC	2 cut(s)	92, 115
HpaII	CCGG	1 cut(s)	416
Hpy166II	GTNNAC	3 cut(s)	291, 366, 450
Hpy188I	TCNGA	3 cut(s)	61, 103, 358
Hpy188III	TCNNGA	2 cut(s)	221, 238
Hpy8I	GTNNAC	3 cut(s)	291, 366, 450
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	40, 262, 467, 481
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	4, 249, 281, 386, 407, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	42, 58, 198, 441
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	61, 308, 388
LguI	GCTCTTC	1 cut(s)	527
LpnPI	CCDG	6 cut(s)	234, 239, 242, 251, 306, 429
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	109, 146, 436
MalI	GATC	3 cut(s)	63, 310, 390
MboI	GATC	3 cut(s)	61, 308, 388
MboII	GAAGA	2 cut(s)	223, 327
MflI	RGATCY	2 cut(s)	308, 388
MluCI	AATT	4 cut(s)	215, 341, 399, 422
MlyI	GAGTC	2 cut(s)	101, 124
MnlI	CCTC	5 cut(s)	65, 92, 95, 124, 309
Mph1103I	ATGCAT	1 cut(s)	251
MseI	TTAA	1 cut(s)	143
MspI	CCGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	249
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	3 cut(s)	61, 308, 388
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	169, 310
NsiI	ATGCAT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	249
PinAI	ACCGGT	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	2 cut(s)	100, 123
PpsI	GAGTC	2 cut(s)	100, 123
PspN4I	GGNNCC	2 cut(s)	169, 310
PsuI	RGATCY	2 cut(s)	308, 388
RsaI	GTAC	3 cut(s)	233, 319, 365
RsaNI	GTAC	3 cut(s)	232, 318, 364
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	3 cut(s)	61, 308, 388
ScaI	AGTACT	2 cut(s)	233, 319
SchI	GAGTC	2 cut(s)	101, 124
SetI	ASST	2 cut(s)	57, 84
SfaNI	GCATC	1 cut(s)	236
Sse9I	AATT	4 cut(s)	215, 341, 399, 422
SspI	AATATT	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	215, 341, 399, 422
TatI	WGTACW	3 cut(s)	231, 317, 363
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	85
XapI	RAATTY	2 cut(s)	215, 422
ZrmI	AGTACT	2 cut(s)	233, 319
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.