Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

18608173 .. 18610727

Gene Structure 2555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAGAGAAGAAAAACCCTAAGAAGGCCAATCTCAGAGACCACCACTCCATCAAGCACGTCCTCGACGAGTCCGTCACTGAGATCGTGACGAGCCGTGGATATGTGGAAGACGTGAGGATGAGCAATCTGAGGCTGGTTATGGGGACCATTATCATCGTGGTTGCTCTCTTCGCTCAGTTTTACAAGAAGAAGTTTCCGGAGAATCGAGATTTTCTGCTCATCTGCATCGCCTTGTATGTGGTGTTGAATGGGATGTTGCAGCTTATTATATACATCAAGGAGAAGAACGCCATCCTCTTCACTTATCCTCCAAAGGATTCCTTCACAAGCACTGGATTGGCGGTCTCTTCCAAACTTCCAAGATTCTCTGATCTGTACACCCTTGAGATAGCGAGTGCAGACCCCAAATCTATTTCCGCAAATCAACCAGTACAGTTTACGAAAAGTGTTACCAAGTGGTTCACCAAGGATGGAATTTTGGTAGAGGGCCTCTTCTGGAAAGACATTGAAGCACTTATCGATGAATACGAGAAAGAACCAAAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

186

Amino Acids

21.22

Weight (kDa)

8.99

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	18 - 174	3.2e-41	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	344, 420
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	2 cut(s)	380, 435
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	250, 512
AjiI	CACGTC	2 cut(s)	61, 115
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	33, 352
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	27, 490
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	147, 490
AsuHPI	GGTGA	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	3 cut(s)	59, 302, 467
BceAI	ACGGC	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	33, 352
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	147
BmgBI	CACGTC	2 cut(s)	61, 115
BmgT120I	GGNCC	2 cut(s)	147, 490
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	522
BsaI	GGTCTC	2 cut(s)	33, 352
BsaJI	CCNNGG	2 cut(s)	97, 468
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 295, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	340, 431
BseAI	TCCGGA	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	97, 468
BseGI	GGATG	4 cut(s)	126, 261, 294, 478
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	4 cut(s)	49, 72, 122, 191
BseNI	ACTGG	2 cut(s)	340, 431
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	29, 492
BshVI	ATCGAT	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	33, 352
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	29, 492
Bso31I	GGTCTC	2 cut(s)	33, 352
Bsp13I	TCCGGA	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	84, 373
BspACI	CCGC	2 cut(s)	344, 420
BspANI	GGCC	2 cut(s)	29, 492
BspCNI	CTCAG	4 cut(s)	48, 73, 123, 190
BspDI	ATCGAT	1 cut(s)	522
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	542
BspTNI	GGTCTC	2 cut(s)	33, 352
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	340, 431
BssECI	CCNNGG	2 cut(s)	97, 468
BssMI	GATC	2 cut(s)	84, 373
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	5 cut(s)	176, 305, 355, 500, 542
BstAUI	TGTACA	1 cut(s)	378
BstDEI	CTNAG	5 cut(s)	21, 35, 81, 131, 177
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	4 cut(s)	126, 261, 294, 478
BstKTI	GATC	2 cut(s)	87, 376
BstMAI	GTCTC	2 cut(s)	33, 352
BstMBI	GATC	2 cut(s)	84, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	29, 492
BsuTUI	ATCGAT	1 cut(s)	522
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	214
BtrI	CACGTC	2 cut(s)	61, 115
BtsCI	GGATG	4 cut(s)	126, 261, 294, 478
BtsIMutI	CAGTG	2 cut(s)	78, 333
Cfr13I	GGNCC	2 cut(s)	147, 490
ClaI	ATCGAT	1 cut(s)	522
Csp6I	GTAC	2 cut(s)	379, 434
CviJI	RGCY	5 cut(s)	29, 96, 136, 265, 492
CviKI_1	RGCY	5 cut(s)	29, 96, 136, 265, 492
CviQI	GTAC	2 cut(s)	379, 434
DdeI	CTNAG	5 cut(s)	21, 35, 81, 131, 177
DpnI	GATC	2 cut(s)	86, 375
DpnII	GATC	2 cut(s)	84, 373
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	5 cut(s)	176, 305, 355, 500, 542
EarI	CTCTTC	5 cut(s)	176, 305, 355, 500, 542
Eco130I	CCWWGG	1 cut(s)	468
Eco31I	GGTCTC	2 cut(s)	33, 352
Eco47I	GGWCC	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaiI	YATR	5 cut(s)	105, 143, 240, 272, 274
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	4 cut(s)	133, 268, 281, 485
Fsp4HI	GCNGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	29, 492
HapII	CCGG	1 cut(s)	200
HinfI	GANTC	4 cut(s)	71, 205, 320, 366
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	3 cut(s)	381, 441, 465
Hpy188I	TCNGA	3 cut(s)	38, 132, 373
Hpy188III	TCNNGA	4 cut(s)	88, 200, 209, 499
Hpy8I	GTNNAC	3 cut(s)	381, 441, 465
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	19, 334
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	2 cut(s)	60, 114
HpyCH4V	TGCA	3 cut(s)	228, 262, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	5 cut(s)	21, 35, 81, 131, 177
HpySE526I	ACGT	2 cut(s)	60, 114
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	84, 373
LguI	GCTCTTC	1 cut(s)	542
LpnPI	CCDG	5 cut(s)	122, 213, 321, 444, 484
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	2 cut(s)	60, 114
MaeIII	GTNAC	3 cut(s)	76, 88, 451
MalI	GATC	2 cut(s)	86, 375
MboI	GATC	2 cut(s)	84, 373
MboII	GAAGA	9 cut(s)	17, 22, 122, 163, 202, 292, 298, 342, 487
MluCI	AATT	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	74, 111, 126, 308, 321, 481, 503
MroI	TCCGGA	1 cut(s)	199
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	84, 373
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	76, 88
PciSI	GCTCTTC	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 72, 528
PfeI	GAWTC	3 cut(s)	205, 320, 366
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	147, 490
RsaI	GTAC	2 cut(s)	380, 435
RsaNI	GTAC	2 cut(s)	379, 434
SapI	GCTCTTC	1 cut(s)	542
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	2 cut(s)	84, 373
Sau96I	GGNCC	2 cut(s)	147, 490
SchI	GAGTC	1 cut(s)	80
SetI	ASST	3 cut(s)	63, 117, 267
SfaNI	GCATC	1 cut(s)	237
SinI	GGWCC	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	2 cut(s)	344, 420
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	2 cut(s)	63, 117
TaqI	TCGA	3 cut(s)	66, 208, 522
TasI	AATT	1 cut(s)	477
TatI	WGTACW	2 cut(s)	378, 433
TfiI	GAWTC	3 cut(s)	205, 320, 366
TscAI	CASTG	2 cut(s)	85, 340
TseFI	GTSAC	2 cut(s)	76, 88
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	2 cut(s)	76, 88
TspDTI	ATGAA	1 cut(s)	540
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	85, 340
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.