Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

3689346 .. 3691350

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCGGAGACGAAGGCCGAGAGCAAGAGCAAAAACCCTAAGAAGGTCAATCTCTCAGATCACAGCTCCATCAAGCACCTCCTCGACGAGTCTGTCTCCGAGATTGTTAAGAGTCGCGGGTATGTGGAGAATACGAGGCTGAGTAACTTGAAGTTGCTGATTGGAACCATTGTGATAATCATTGCTTTGTTTGCTCAGTTCTACAACAAGAAATTTCCGGAAAACCGAGATTTCCTGCTTGGATGCATTTATGTCATCGTTAATGGGATATTGCAGCTGGTCTCATACACGAAGGAGAAAAATGCAATCTTGTTCACTCATCCTCCTGCGGGCGCCTTTAGCACCGGGTTGGTGGTGTCTTCCAAGTTACCAAGATTTTCTGACTTGTACACGCTTACAATAGCCAGTGCAGATCCGGAATCAATATCTGCAAACAAACCAGTGGAATTCACAAAGAGCGTTACTCAGTGGTTTACCAAGGATGGAGTGTTGGTGGAAGGCCTTTTCTGGAAGGAAGTGGACGGACTCATCAACGAGTATGCAAAAGAACCGAAGAAGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

189

Amino Acids

21.0

Weight (kDa)

9.16

Isoelectric Point (pI)

26.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	2 cut(s)	217, 415
AciI	CCGC	2 cut(s)	117, 329
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	212, 446
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	43, 329
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	2 cut(s)	66, 277
AluI	AGCT	2 cut(s)	66, 277
Alw26I	GTCTC	3 cut(s)	2, 100, 286
AlwI	GGATC	1 cut(s)	407
Aor13HI	TCCGGA	2 cut(s)	217, 415
AoxI	GGCC	2 cut(s)	15, 499
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	212, 446
AspLEI	GCGC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	77, 476
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	2, 100, 286
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	166, 334
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 448, 480
BpuMI	CCSGG	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	477
BsaWI	WCCGGW	2 cut(s)	217, 415
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 329
Bse1I	ACTGG	2 cut(s)	405, 440
Bse3DI	GCAATG	1 cut(s)	180
BseAI	TCCGGA	2 cut(s)	217, 415
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	3 cut(s)	248, 319, 487
BseLI	CCNNNNNNNGG	2 cut(s)	43, 329
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	4 cut(s)	69, 131, 209, 479
BseNI	ACTGG	2 cut(s)	405, 440
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	17, 501
BshNI	GGYRCC	1 cut(s)	332
BsiSI	CCGG	3 cut(s)	218, 345, 416
BslI	CCNNNNNNNGG	2 cut(s)	43, 329
BsmAI	GTCTC	3 cut(s)	2, 100, 286
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	17, 501
Bso31I	GGTCTC	1 cut(s)	286
Bsp13I	TCCGGA	2 cut(s)	217, 415
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	58, 412
BspACI	CCGC	2 cut(s)	117, 329
BspANI	GGCC	2 cut(s)	17, 501
BspCNI	CTCAG	4 cut(s)	68, 132, 208, 478
BspEI	TCCGGA	2 cut(s)	217, 415
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	166, 334
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	405, 440
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	2 cut(s)	58, 412
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	551
BstACI	GRCGYC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	5 cut(s)	39, 55, 140, 195, 465
BstF5I	GGATG	3 cut(s)	248, 319, 487
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	61, 415
BstMAI	GTCTC	3 cut(s)	2, 100, 286
BstMBI	GATC	2 cut(s)	58, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 339
BstSCI	CCNGG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	17, 501
BtsCI	GGATG	3 cut(s)	248, 319, 487
BtsIMutI	CAGTG	3 cut(s)	412, 447, 473
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	388
CviJI	RGCY	6 cut(s)	17, 66, 139, 277, 404, 501
CviKI_1	RGCY	6 cut(s)	17, 66, 139, 277, 404, 501
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	5 cut(s)	39, 55, 140, 195, 465
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	2 cut(s)	60, 414
DpnII	GATC	2 cut(s)	58, 412
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	248
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	2
FaiI	YATR	4 cut(s)	123, 252, 286, 540
FauI	CCCGC	2 cut(s)	110, 322
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	3 cut(s)	255, 306, 494
Fsp4HI	GCNGC	1 cut(s)	275
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	17, 501
HapII	CCGG	3 cut(s)	218, 345, 416
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	333
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	4 cut(s)	89, 112, 419, 525
HpaII	CCGG	3 cut(s)	218, 345, 416
Hpy166II	GTNNAC	4 cut(s)	315, 390, 474, 520
Hpy188I	TCNGA	4 cut(s)	7, 58, 100, 382
Hpy188III	TCNNGA	3 cut(s)	218, 416, 508
Hpy8I	GTNNAC	4 cut(s)	315, 390, 474, 520
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	5 cut(s)	7, 37, 286, 491, 505
HpyCH4V	TGCA	6 cut(s)	246, 274, 305, 410, 431, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 339
HpyF3I	CTNAG	5 cut(s)	39, 55, 140, 195, 465
Hsp92I	GRCGYC	1 cut(s)	333
HspAI	GCGC	1 cut(s)	333
KasI	GGCGCC	1 cut(s)	332
Kpn2I	TCCGGA	2 cut(s)	217, 415
Kzo9I	GATC	2 cut(s)	58, 412
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	9 cut(s)	231, 248, 263, 339, 358, 418, 429, 453, 493
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	233
MaeIII	GTNAC	3 cut(s)	143, 366, 460
MalI	GATC	2 cut(s)	60, 414
MboI	GATC	2 cut(s)	58, 412
MboII	GAAGA	2 cut(s)	351, 565
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	2 cut(s)	212, 446
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	3 cut(s)	98, 121, 519
MnlI	CCTC	4 cut(s)	89, 92, 129, 333
Mph1103I	ATGCAT	1 cut(s)	248
MroI	TCCGGA	2 cut(s)	217, 415
MseI	TTAA	2 cut(s)	108, 261
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	3 cut(s)	218, 345, 416
MspR9I	CCNGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	191, 339
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	58, 412
NlaIV	GGNNCC	2 cut(s)	166, 334
NmeAIII	GCCGAG	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	3 cut(s)	97, 120, 519
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	3 cut(s)	97, 120, 519
PspN4I	GGNNCC	2 cut(s)	166, 334
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	108, 261
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	58, 412
SchI	GAGTC	3 cut(s)	98, 121, 519
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	4 cut(s)	48, 68, 81, 279
SfaNI	GCATC	1 cut(s)	233
SfoI	GGCGCC	1 cut(s)	334
Sse9I	AATT	2 cut(s)	212, 446
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	2 cut(s)	117, 329
SspDI	GGCGCC	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	477
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	212, 446
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	108, 261
Tru9I	TTAA	2 cut(s)	108, 261
TscAI	CASTG	3 cut(s)	412, 447, 473
TseI	GCWGC	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	3 cut(s)	412, 447, 473
XapI	RAATTY	2 cut(s)	212, 446
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.