Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Forward (+)

8661536 .. 8664280

Gene Structure 2745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAAGAAAAGAAATCACAGTCGGCCACCAAAAACCCTAAGAAGGCCAACCTCGTCGACCACCACTCCATCAAGCACGTCCTCGACGAGTCCGTTACTGAGATCGTAACGAGCCGTGGATATGTGGAAGACGTGAGGATGAGCAATCTGAGGCTGGTCATGGGGACCGTTATCATTGTGATTGCTCTCTTCGCTCAGTTTTACAAGAAGAAGTTCCCGGAGAACCGAGATTTTCTCCTCCTCTGCATCGCCTTGTATGTGGTGTTGAATGGGATATTGCAGCTTATTATATACGTGAAGGAGAAGAATGCCATCCTCTTCACTTATCCTCCAAAGGATTCCTTCACAAGCACTGGATTGGTGGTCTCTTCCAAACTTCCAAGATTCTCTGATATGTACACACTTGAGATAGCAAGTGCAGACCCCAAATCTATTTCTGCAAATCCACCAGTACAGTTAACCAAAAGTGTCACCAAGTGGTTCACAAAGGACGGAATTTTGGTGGAGGGCCTCTTCTGGAAAGACATTGAAGCGCTGATCAACGACTACCAGAAAGAACCAAAGAAGGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

191

Amino Acids

21.67

Weight (kDa)

9.25

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	24 - 181	1.8e-41	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	398, 453
AfeI	AGCGCT	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	43, 566
AgsI	TTSAA	2 cut(s)	268, 530
AjiI	CACGTC	2 cut(s)	79, 133
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	370
Aor51HI	AGCGCT	1 cut(s)	534
AoxI	GGCC	3 cut(s)	24, 45, 508
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	165, 508
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	77, 320
BceAI	ACGGC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	536
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	165
BmgBI	CACGTC	2 cut(s)	79, 133
BmgT120I	GGNCC	2 cut(s)	165, 508
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 566
Bse1I	ACTGG	2 cut(s)	358, 449
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	144, 312
BseLI	CCNNNNNNNGG	2 cut(s)	43, 566
BseMII	CTCAG	3 cut(s)	90, 140, 209
BseNI	ACTGG	2 cut(s)	358, 449
BseRI	GAGGAG	2 cut(s)	227, 230
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	26, 47, 510
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	43, 566
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	26, 47, 510
Bso31I	GGTCTC	1 cut(s)	370
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	102, 537
BspANI	GGCC	3 cut(s)	26, 47, 510
BspCNI	CTCAG	3 cut(s)	91, 141, 208
BspLI	GGNNCC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	358, 449
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	102, 537
Bst4CI	ACNGT	3 cut(s)	21, 169, 456
Bst6I	CTCTTC	4 cut(s)	194, 323, 373, 518
BstAUI	TGTACA	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	295
BstDEI	CTNAG	4 cut(s)	39, 99, 149, 195
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	144, 312
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	2 cut(s)	105, 540
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	2 cut(s)	102, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	26, 47, 510
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	232
BtrI	CACGTC	2 cut(s)	79, 133
BtsCI	GGATG	2 cut(s)	144, 312
BtsIMutI	CAGTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	165, 508
Csp6I	GTAC	2 cut(s)	397, 452
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	6 cut(s)	26, 47, 114, 154, 283, 510
CviKI_1	RGCY	6 cut(s)	26, 47, 114, 154, 283, 510
CviQI	GTAC	2 cut(s)	397, 452
DdeI	CTNAG	4 cut(s)	39, 99, 149, 195
DpnI	GATC	2 cut(s)	104, 539
DpnII	GATC	2 cut(s)	102, 537
DraIII	CACNNNGTG	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	4 cut(s)	194, 323, 373, 518
EarI	CTCTTC	4 cut(s)	194, 323, 373, 518
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	508
FaeI	CATG	1 cut(s)	163
FaiI	YATR	6 cut(s)	123, 161, 258, 290, 292, 395
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	151, 299
Fsp4HI	GCNGC	1 cut(s)	281
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	3 cut(s)	26, 47, 510
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	2 cut(s)	58, 459
HindII	GTYRAC	2 cut(s)	58, 459
HinfI	GANTC	3 cut(s)	89, 338, 384
HpaI	GTTAAC	1 cut(s)	459
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	4 cut(s)	58, 399, 459, 483
Hpy188I	TCNGA	2 cut(s)	150, 391
Hpy188III	TCNNGA	1 cut(s)	517
Hpy8I	GTNNAC	4 cut(s)	58, 399, 459, 483
Hpy99I	CGWCG	2 cut(s)	59, 89
HpyAV	CCTTC	4 cut(s)	37, 292, 352, 559
HpyCH4III	ACNGT	3 cut(s)	21, 169, 456
HpyCH4IV	ACGT	3 cut(s)	78, 132, 294
HpyCH4V	TGCA	4 cut(s)	246, 280, 419, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	39, 99, 149, 195
HpySE526I	ACGT	3 cut(s)	78, 132, 294
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	537
KspAI	GTTAAC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	102, 537
LpnPI	CCDG	6 cut(s)	140, 231, 339, 462, 502, 563
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	3 cut(s)	78, 132, 294
MaeIII	GTNAC	3 cut(s)	94, 106, 469
MalI	GATC	2 cut(s)	104, 539
MboI	GATC	2 cut(s)	102, 537
MboII	GAAGA	8 cut(s)	17, 140, 181, 220, 310, 316, 360, 505
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	1 cut(s)	458
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	102, 537
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 90
PctI	GAATGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	338, 384
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Ppu21I	YACGTR	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	165, 508
RsaI	GTAC	2 cut(s)	398, 453
RsaNI	GTAC	2 cut(s)	397, 452
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	102, 537
Sau96I	GGNCC	2 cut(s)	165, 508
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	5 cut(s)	54, 81, 135, 285, 297
SfaNI	GCATC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	21, 169, 456
TaiI	ACGT	3 cut(s)	81, 135, 297
TaqI	TCGA	2 cut(s)	57, 84
TasI	AATT	1 cut(s)	495
TatI	WGTACW	2 cut(s)	396, 451
TfiI	GAWTC	2 cut(s)	338, 384
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	469
TspGWI	ACGGA	2 cut(s)	82, 507
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.