Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

59930623 .. 59932563

Gene Structure 1941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG401900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCAAGAGACAAAAGACGCAAGCAGCAAGCCCAAAAACCCTAAGAAGGCCAACCTCTCAGATCACAGTTCCATCAAGCACCTCCTCGACGAGTCCGTCTCCGAGATTGTTACGAGTCGGGGATATGTGGAGGATACCAAGTTAAGTAACTTGAAGTTGTTGATTGGAACCATTGTGATAACCATTGCTCTATTTGCTCAGTTCTACAAGAAGAAATTTCCTGAAAACCAGTACTTCCTGATTGGATGCATTTATATTGTCATCAATGGGGTGCTACAGCTGATCTCCTACATGAAGGAGAAAAATGCAATATTGTTCACTCATCCTCCCGTGGGATCCTTTAGTACTGGGTTGGTGGTGTCTTCCAAATTACCAAGATTTTCTGACTTGTACACTCTTACAATAGCAAGTGCAGATCCAAAATCAATTTCTGCAAATAAACCGGTGGAATTCACACAGAGTGTTACTAAGTGGTTTACCAAGGATGGAGTTTTGGTGGAAGGCTTGCTGCGGAAGGAAGTTGATGGACTAATAAATGATTATGCAAGAGAACCAAAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

189

Amino Acids

21.1

Weight (kDa)

9.35

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	25 - 179	1.7e-36	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	3 cut(s)	330, 343, 410
AcsI	RAATTY	2 cut(s)	215, 449
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	3 cut(s)	233, 346, 392
AfiI	CCNNNNNNNGG	2 cut(s)	46, 332
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	2 cut(s)	2, 103
AlwI	GGATC	3 cut(s)	330, 343, 410
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	24, 508
ApoI	RAATTY	2 cut(s)	215, 449
AsiGI	ACCGGT	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	36, 495
BccI	CCATC	3 cut(s)	80, 479, 518
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	2, 103
BfmI	CTRYAG	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	25, 509
BlsI	GCNGC	2 cut(s)	26, 510
BmcAI	AGTACT	2 cut(s)	233, 346
BmiI	GGNNCC	2 cut(s)	169, 337
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BsaJI	CCNNGG	2 cut(s)	330, 480
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	4 cut(s)	310, 340, 480, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 332
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	2 cut(s)	229, 352
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	330, 480
BseGI	GGATG	3 cut(s)	251, 322, 490
BseLI	CCNNNNNNNGG	2 cut(s)	46, 332
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	72, 212
BseNI	ACTGG	2 cut(s)	229, 352
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	36, 495
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	50
BshTI	ACCGGT	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	46, 332
BsmAI	GTCTC	2 cut(s)	2, 103
BsmBI	CGTCTC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	61, 282, 335, 415
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	71, 211
BspLI	GGNNCC	2 cut(s)	169, 337
BspPI	GGATC	3 cut(s)	330, 343, 410
BspQI	GCTCTTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	442
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	229, 352
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	330, 480
BssMI	GATC	4 cut(s)	61, 282, 335, 415
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	22, 29, 506
BstDEI	CTNAG	4 cut(s)	42, 58, 198, 468
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	251, 322, 490
BstKTI	GATC	4 cut(s)	64, 285, 338, 418
BstMAI	GTCTC	2 cut(s)	2, 103
BstMBI	GATC	4 cut(s)	61, 282, 335, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	36, 495
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	2 cut(s)	335, 415
BstYI	RGATCY	2 cut(s)	335, 415
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	251, 322, 490
Cac8I	GCNNGC	3 cut(s)	22, 29, 506
Cfr10I	RCCGGY	1 cut(s)	442
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	232, 345, 391
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	4 cut(s)	31, 50, 280, 504
CviKI_1	RGCY	4 cut(s)	31, 50, 280, 504
CviQI	GTAC	3 cut(s)	232, 345, 391
DdeI	CTNAG	4 cut(s)	42, 58, 198, 468
DpnI	GATC	4 cut(s)	63, 284, 337, 417
DpnII	GATC	4 cut(s)	61, 282, 335, 415
DraIII	CACNNNGTG	1 cut(s)	461
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	1 cut(s)	295
FaiI	YATR	4 cut(s)	126, 255, 293, 543
FatI	CATG	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	25, 509
FokI	GGATG	3 cut(s)	258, 309, 497
Fsp4HI	GCNGC	2 cut(s)	25, 509
GluI	GCNGC	2 cut(s)	25, 509
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	295
HinfI	GANTC	2 cut(s)	92, 115
HpaII	CCGG	1 cut(s)	443
Hpy166II	GTNNAC	3 cut(s)	318, 393, 477
Hpy188I	TCNGA	3 cut(s)	61, 103, 385
Hpy188III	TCNNGA	2 cut(s)	221, 238
Hpy8I	GTNNAC	3 cut(s)	318, 393, 477
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	40, 289, 494, 508
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	4, 249, 308, 413, 434, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	42, 58, 198, 468
Hsp92II	CATG	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	61, 282, 335, 415
LguI	GCTCTTC	1 cut(s)	554
LpnPI	CCDG	5 cut(s)	234, 242, 251, 333, 456
Lsp1109I	GCAGC	2 cut(s)	36, 495
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	109, 146, 463
MalI	GATC	4 cut(s)	63, 284, 337, 417
MboI	GATC	4 cut(s)	61, 282, 335, 415
MboII	GAAGA	2 cut(s)	223, 354
MflI	RGATCY	2 cut(s)	335, 415
MluCI	AATT	4 cut(s)	215, 368, 426, 449
MlyI	GAGTC	2 cut(s)	101, 124
MnlI	CCTC	5 cut(s)	65, 92, 95, 124, 336
Mph1103I	ATGCAT	1 cut(s)	251
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	4 cut(s)	61, 282, 335, 415
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	169, 337
NsiI	ATGCAT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	26, 510
PleI	GAGTC	2 cut(s)	100, 123
PpsI	GAGTC	2 cut(s)	100, 123
PspN4I	GGNNCC	2 cut(s)	169, 337
PsuI	RGATCY	2 cut(s)	335, 415
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	3 cut(s)	233, 346, 392
RsaNI	GTAC	3 cut(s)	232, 345, 391
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	25, 509
Sau3AI	GATC	4 cut(s)	61, 282, 335, 415
ScaI	AGTACT	2 cut(s)	233, 346
SchI	GAGTC	2 cut(s)	101, 124
SetI	ASST	3 cut(s)	57, 84, 282
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	275
Sse9I	AATT	4 cut(s)	215, 368, 426, 449
SsiI	CCGC	1 cut(s)	511
SspI	AATATT	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	215, 368, 426, 449
TatI	WGTACW	3 cut(s)	231, 344, 390
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseI	GCWGC	2 cut(s)	24, 508
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	85
XapI	RAATTY	2 cut(s)	215, 449
ZrmI	AGTACT	2 cut(s)	233, 346
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.