Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

59663325 .. 59666385

Gene Structure 3061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAAGAACAGAAATCACAGTCGGCCACCAAAAACCCTAAGAAGGCCAACCTCGTCGACCACCACTCCATCAAGCACGTCCTCGACGAGTCTGTAACTGAGATCGTAACGAGCCGTGGATATGTGGAAGACGTGAGGATGAGCAATCTGAGGCTGGTTATGGGGACCGTTATCATTGTGATTGCTCTCTTCGCTCAGTTTTACAAGAAGAAGTTCCCGGAGAACCGAGACTTTCTCCTCCTCTGCATCTATGTGGTGTTGAATGGGATATTGCAGCTTATTATATACGTGAAGGAGAAGAATGCCATCCTCTTCACTTATCCTCCAAAGGATTCCTTCACAAGCACTGGATTGGTGGTCTCTTCCAAACTTCCAAGATTCTCTGATATGTACACACTTGAGATAGCAAGTGCAGACCCCAAATCTATTTCTGCAAATCCACCAGTACAGTTTACCAAAAGTGTCACCAAGTGGTTCACCAAGGATGGAATTTTGGTGGAGGGCCTCTTCTGGAAAGACGTTGAAGCGCTGATCGACGATTACCAGAAAGAACCAAAGAAGGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

189

Amino Acids

21.51

Weight (kDa)

8.99

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	24 - 178	7e-38	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	489
AdeI	CACNNNGTG	1 cut(s)	471
AfaI	GTAC	2 cut(s)	392, 447
AfeI	AGCGCT	1 cut(s)	528
AfiI	CCNNNNNNNGG	2 cut(s)	43, 560
AgsI	TTSAA	2 cut(s)	262, 524
AjiI	CACGTC	2 cut(s)	79, 133
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	222, 364
Aor51HI	AGCGCT	1 cut(s)	528
AoxI	GGCC	3 cut(s)	24, 45, 502
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	2 cut(s)	165, 502
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	457, 469
AvaII	GGWCC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	77, 314, 479
BceAI	ACGGC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	222, 364
BfoI	RGCGCY	1 cut(s)	530
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	165
BmgBI	CACGTC	2 cut(s)	79, 133
BmgT120I	GGNCC	2 cut(s)	165, 502
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	115, 480
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 307, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 560
Bse1I	ACTGG	2 cut(s)	352, 443
BseDI	CCNNGG	2 cut(s)	115, 480
BseGI	GGATG	3 cut(s)	144, 306, 490
BseLI	CCNNNNNNNGG	2 cut(s)	43, 560
BseMII	CTCAG	3 cut(s)	90, 140, 209
BseNI	ACTGG	2 cut(s)	352, 443
BseRI	GAGGAG	2 cut(s)	227, 230
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	26, 47, 504
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	43, 560
BsmAI	GTCTC	2 cut(s)	222, 364
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	26, 47, 504
Bso31I	GGTCTC	1 cut(s)	364
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	102, 531
BspANI	GGCC	3 cut(s)	26, 47, 504
BspCNI	CTCAG	3 cut(s)	91, 141, 208
BspLI	GGNNCC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	352, 443
BssECI	CCNNGG	2 cut(s)	115, 480
BssMI	GATC	2 cut(s)	102, 531
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	21, 169, 450
Bst6I	CTCTTC	4 cut(s)	194, 317, 367, 512
BstAUI	TGTACA	1 cut(s)	390
BstBAI	YACGTR	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	39, 99, 149, 195
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	144, 306, 490
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	105, 534
BstMAI	GTCTC	2 cut(s)	222, 364
BstMBI	GATC	2 cut(s)	102, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	26, 47, 504
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	2 cut(s)	79, 133
BtsCI	GGATG	3 cut(s)	144, 306, 490
BtsIMutI	CAGTG	1 cut(s)	345
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	165, 502
Csp6I	GTAC	2 cut(s)	391, 446
CviJI	RGCY	6 cut(s)	26, 47, 114, 154, 277, 504
CviKI_1	RGCY	6 cut(s)	26, 47, 114, 154, 277, 504
CviQI	GTAC	2 cut(s)	391, 446
DdeI	CTNAG	4 cut(s)	39, 99, 149, 195
DpnI	GATC	2 cut(s)	104, 533
DpnII	GATC	2 cut(s)	102, 531
DraIII	CACNNNGTG	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	4 cut(s)	194, 317, 367, 512
EarI	CTCTTC	4 cut(s)	194, 317, 367, 512
Eco130I	CCWWGG	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaiI	YATR	6 cut(s)	123, 161, 252, 284, 286, 389
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	3 cut(s)	151, 293, 497
Fsp4HI	GCNGC	1 cut(s)	275
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	3 cut(s)	26, 47, 504
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	529
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	89, 332, 378
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	457, 469
Hpy166II	GTNNAC	4 cut(s)	58, 393, 453, 477
Hpy188I	TCNGA	2 cut(s)	150, 385
Hpy188III	TCNNGA	1 cut(s)	511
Hpy8I	GTNNAC	4 cut(s)	58, 393, 453, 477
Hpy99I	CGWCG	3 cut(s)	59, 89, 539
HpyAV	CCTTC	4 cut(s)	37, 286, 346, 553
HpyCH4III	ACNGT	3 cut(s)	21, 169, 450
HpyCH4IV	ACGT	4 cut(s)	78, 132, 288, 519
HpyCH4V	TGCA	4 cut(s)	246, 274, 413, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	39, 99, 149, 195
HpySE526I	ACGT	4 cut(s)	78, 132, 288, 519
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	102, 531
LpnPI	CCDG	6 cut(s)	140, 231, 333, 456, 496, 557
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	4 cut(s)	78, 132, 288, 519
MaeIII	GTNAC	3 cut(s)	94, 106, 463
MalI	GATC	2 cut(s)	104, 533
MboI	GATC	2 cut(s)	102, 531
MboII	GAAGA	8 cut(s)	17, 140, 181, 220, 304, 310, 354, 499
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	102, 531
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	332, 378
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Ppu21I	YACGTR	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	165, 502
RsaI	GTAC	2 cut(s)	392, 447
RsaNI	GTAC	2 cut(s)	391, 446
RseI	CAYNNNNRTG	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	102, 531
Sau96I	GGNCC	2 cut(s)	165, 502
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	6 cut(s)	54, 81, 135, 279, 291, 522
SfaNI	GCATC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	21, 169, 450
TaiI	ACGT	4 cut(s)	81, 135, 291, 522
TaqI	TCGA	3 cut(s)	57, 84, 534
TasI	AATT	1 cut(s)	489
TatI	WGTACW	2 cut(s)	390, 445
TfiI	GAWTC	2 cut(s)	332, 378
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	463
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.