Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

59226892 .. 59229948

Gene Structure 3057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAAATGTGTTTTATCTTTGACTCTGGCAAGTATGTGGTGTTGAATGGGATATTGCAGCTTATTATCTACGTGAAGGAGAAGAATGCCATCCTCTTCACTTATCCTCCAAAGGATTCCTTCACAAGCACTGGATTGGTGGTCTCTTCCAAACTTCCAAGATTCTCTGATATGTACACACTTGAGATAGCAAGTGCAGACCCCAAATCTATTTCTGCAAATCCACCAGTACAGTTTACCAAAAGTGTCACCAAGTGGTTCACCAAGGACGGAATTTTGGTGGAGGGCCTCTTCTGGAAAGACGTTGAAGCGCTGATCGACGATTACCAGAAAGAACCAAAGAAGGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

117

Amino Acids

13.25

Weight (kDa)

8.93

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	12 - 106	3.2e-20	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	176, 231
AfeI	AGCGCT	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	46, 308
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	148
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	241, 253
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	148
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	2 cut(s)	136, 227
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	136, 227
BseXI	GCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	136, 227
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	3 cut(s)	101, 151, 296
BstAUI	TGTACA	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	129
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	175, 230
CviJI	RGCY	2 cut(s)	61, 288
CviKI_1	RGCY	2 cut(s)	61, 288
CviQI	GTAC	2 cut(s)	175, 230
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	101, 151, 296
EarI	CTCTTC	3 cut(s)	101, 151, 296
Eco130I	CCWWGG	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	148
Eco47III	AGCGCT	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaiI	YATR	2 cut(s)	36, 173
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	59
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	3 cut(s)	23, 116, 162
HphI	GGTGA	2 cut(s)	241, 253
Hpy166II	GTNNAC	3 cut(s)	177, 237, 261
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	3 cut(s)	177, 237, 261
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	70, 130, 337
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	2 cut(s)	72, 303
HpyCH4V	TGCA	3 cut(s)	58, 197, 218
HpySE526I	ACGT	2 cut(s)	72, 303
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	315
LpnPI	CCDG	5 cut(s)	12, 117, 240, 280, 341
Lsp1109I	GCAGC	1 cut(s)	70
MaeII	ACGT	2 cut(s)	72, 303
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	4 cut(s)	88, 94, 138, 283
MluCI	AATT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	4 cut(s)	104, 117, 277, 299
Mva1269I	GAATGC	1 cut(s)	91
NdeII	GATC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	116, 162
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	286
RsaI	GTAC	2 cut(s)	176, 231
RsaNI	GTAC	2 cut(s)	175, 230
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	17
SetI	ASST	3 cut(s)	63, 75, 306
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	2 cut(s)	75, 306
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	273
TatI	WGTACW	2 cut(s)	174, 229
TfiI	GAWTC	2 cut(s)	116, 162
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.