Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Reverse (-)

60692009 .. 60694435

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCAATACTGGAGGCAGTTGAATCAAAAGCCAGTCCCAGACTCTTGAGAGTTGAGAGAGAGGAGAGAAGCAGAACTTCAAAATTGAAAGAGAGAGGTCGAAATCCCAAAATGCAAGAGACAAAAGACGCGAGCAGCAAGCCCAAAAACCCTAAGAAGGCCAACCTCTCAGATCACAGTTCCATCAAGCACCTCCTCGACGAGTCCGTCTCCGAGATTGTTACGAGTCGGGGATATGTGGAGGATACCAAGTTAAGTAACTTGAAGTTGTTGATTGGAACCATTGTGATAACCATTGCTCTATTTGCTCAGTTCTACAAGAAGAAATTTCCTGAAAACCAGTACTTCCTGATTGGATGCATTTATATTGTCATCAATGGGGTGCTACAGCTGATCTCCTACATGAAGGAGAAAAATGCAATATTGTTCACTCATCCTCCCGTGGGATCCTTTAGTACTGGGTTGGTGGTGTCTTCCAAATTACCAAGATTTTCTGACTTGTACACTCTTACAATAGCAAGTGCAGATCCAAAATCAATTTCTGCAAATAAACCGGTGGAATTCACAAATAGTGTTACTAAGTGGTTTACCAAGGATGGAGTTTTGGTGGAAGGCTTGCTGTGGAAGGAAGTAGATGGACTAATAAATGATTATGCAAGAGAACCAAAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

226

Amino Acids

25.44

Weight (kDa)

9.59

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	62 - 216	3.2e-36	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccII	CGCG	1 cut(s)	131
AclWI	GGATC	3 cut(s)	441, 454, 521
AcsI	RAATTY	2 cut(s)	326, 560
AfaI	GTAC	3 cut(s)	344, 457, 503
AfiI	CCNNNNNNNGG	2 cut(s)	157, 443
AgeI	ACCGGT	1 cut(s)	553
AgsI	TTSAA	4 cut(s)	23, 81, 88, 265
AjuI	GAANNNNNNNTTGG	2 cut(s)	523, 555
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	113, 214
AlwI	GGATC	3 cut(s)	441, 454, 521
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	2 cut(s)	326, 560
AsiGI	ACCGGT	1 cut(s)	553
BamHI	GGATCC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	3 cut(s)	191, 590, 629
BciVI	GTATCC	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	113, 214
BfmI	CTRYAG	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmcAI	AGTACT	2 cut(s)	344, 457
BmiI	GGNNCC	2 cut(s)	280, 448
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	441, 591
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	4 cut(s)	421, 451, 591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 443
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	4 cut(s)	15, 33, 340, 463
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	441, 591
BseGI	GGATG	3 cut(s)	362, 433, 601
BseLI	CCNNNNNNNGG	2 cut(s)	157, 443
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	183, 323
BseNI	ACTGG	4 cut(s)	15, 33, 340, 463
BseRI	GAGGAG	2 cut(s)	77, 185
BseXI	GCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	543
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	157, 443
BsmAI	GTCTC	2 cut(s)	113, 214
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	172, 393, 446, 526
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	2 cut(s)	182, 322
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	280, 448
BspPI	GGATC	3 cut(s)	441, 454, 521
BspQI	GCTCTTC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	4 cut(s)	15, 33, 340, 463
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	441, 591
BssMI	GATC	4 cut(s)	172, 393, 446, 526
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	133, 140, 617
BstDEI	CTNAG	4 cut(s)	153, 169, 309, 579
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	362, 433, 601
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	4 cut(s)	175, 396, 449, 529
BstMAI	GTCTC	2 cut(s)	113, 214
BstMBI	GATC	4 cut(s)	172, 393, 446, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	386
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	446, 526
BstYI	RGATCY	2 cut(s)	446, 526
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	362, 433, 601
Cac8I	GCNNGC	3 cut(s)	133, 140, 617
Cfr10I	RCCGGY	1 cut(s)	553
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	343, 456, 502
CspAI	ACCGGT	1 cut(s)	553
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	5 cut(s)	32, 142, 161, 391, 615
CviKI_1	RGCY	5 cut(s)	32, 142, 161, 391, 615
CviQI	GTAC	3 cut(s)	343, 456, 502
DdeI	CTNAG	4 cut(s)	153, 169, 309, 579
DpnI	GATC	4 cut(s)	174, 395, 448, 528
DpnII	GATC	4 cut(s)	172, 393, 446, 526
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	591
EcoRI	GAATTC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	591
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	406
FaiI	YATR	4 cut(s)	237, 366, 404, 654
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	3 cut(s)	369, 420, 608
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	406
HinfI	GANTC	4 cut(s)	23, 42, 203, 226
HpaII	CCGG	1 cut(s)	554
Hpy166II	GTNNAC	3 cut(s)	429, 504, 588
Hpy188I	TCNGA	3 cut(s)	172, 214, 496
Hpy188III	TCNNGA	3 cut(s)	46, 332, 349
Hpy8I	GTNNAC	3 cut(s)	429, 504, 588
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	4 cut(s)	151, 400, 605, 619
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	6 cut(s)	115, 360, 419, 524, 545, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	4 cut(s)	153, 169, 309, 579
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	172, 393, 446, 526
LguI	GCTCTTC	1 cut(s)	665
LpnPI	CCDG	7 cut(s)	46, 52, 345, 353, 362, 444, 567
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	220, 257, 574
MalI	GATC	4 cut(s)	174, 395, 448, 528
MboI	GATC	4 cut(s)	172, 393, 446, 526
MboII	GAAGA	2 cut(s)	334, 465
MflI	RGATCY	2 cut(s)	446, 526
MluCI	AATT	5 cut(s)	83, 326, 479, 537, 560
MlyI	GAGTC	3 cut(s)	36, 212, 235
MnlI	CCTC	8 cut(s)	7, 55, 89, 176, 203, 206, 235, 447
Mph1103I	ATGCAT	1 cut(s)	362
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	4 cut(s)	172, 393, 446, 526
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	2 cut(s)	280, 448
NsiI	ATGCAT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	3 cut(s)	36, 211, 234
PpsI	GAGTC	3 cut(s)	36, 211, 234
PspN4I	GGNNCC	2 cut(s)	280, 448
PsuI	RGATCY	2 cut(s)	446, 526
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	3 cut(s)	344, 457, 503
RsaNI	GTAC	3 cut(s)	343, 456, 502
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	4 cut(s)	172, 393, 446, 526
ScaI	AGTACT	2 cut(s)	344, 457
SchI	GAGTC	3 cut(s)	36, 212, 235
SetI	ASST	4 cut(s)	100, 168, 195, 393
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	5 cut(s)	83, 326, 479, 537, 560
SspI	AATATT	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	100, 198
TasI	AATT	5 cut(s)	83, 326, 479, 537, 560
TatI	WGTACW	3 cut(s)	342, 455, 501
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	196
XapI	RAATTY	2 cut(s)	326, 560
ZrmI	AGTACT	2 cut(s)	344, 457
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.