Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Forward (+)

9159703 .. 9161662

Gene Structure 1960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011404

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAAGAGACAAAAGACGCGAGCAGCAAGCCTAAAAACCCCAAGAAGGCCAACCTCTCCGATCACAGTTCCATCAAGCACCTCCTCGACGAGTCCGTCTCCGAGATTGTTACGAGTCGGGGATATGTGGAGGATACCAAGTTAAGTAACTTGAAGTTGTTGATTGGAACCATTGTGATAACCATTGCTCTATTTGCTCAGTTCTACAAGAAGAAATTTCCTGAAAACCAGTACTTCCTGATTGGGTGCATTTTCAAATTCCCTCAAATGTGTTTAATCTTTGACTCTGGCAAGTATATTGTCATCAATGGGGTGCTACAGCTGATCTCCTACATGAAGGAGAAAAATGCAATATTGTTCACTCATCCTCCCGTGGGATCCTTTAGTACTGGGTTGGTGGTGTCTTCCAAATTACCAAGATTTTCTGACTTGTACACTCTTACAATAGCAAGTGCAGATCCCAAATCAATTTCTGCAAATAAACCGGTGGAATTCACAAAGAGTGTTACTAAGTGGTTTACCAAGGATGGAGTATTGGTGGAAGGCTTGCTGTGGAAGGAAGTAGATGGACTAATAAATGATTATGCAAGAGAACCAAAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

204

Amino Acids

22.78

Weight (kDa)

9.33

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	25 - 193	3e-35	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	20
AclWI	GGATC	3 cut(s)	372, 385, 452
AcsI	RAATTY	3 cut(s)	215, 257, 491
AfaI	GTAC	3 cut(s)	233, 388, 434
AfiI	CCNNNNNNNGG	2 cut(s)	46, 374
AgeI	ACCGGT	1 cut(s)	484
AgsI	TTSAA	2 cut(s)	154, 256
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	2, 103
AlwI	GGATC	3 cut(s)	372, 385, 452
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	3 cut(s)	215, 257, 491
AsiGI	ACCGGT	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	80, 521, 560
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	2, 103
BfmI	CTRYAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmcAI	AGTACT	2 cut(s)	233, 388
BmiI	GGNNCC	2 cut(s)	169, 379
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BsaJI	CCNNGG	2 cut(s)	372, 522
BsaWI	WCCGGW	1 cut(s)	484
BsaXI	ACNNNNNCTCC	4 cut(s)	352, 382, 522, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 374
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	229, 394
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	372, 522
BseGI	GGATG	2 cut(s)	364, 532
BseLI	CCNNNNNNNGG	2 cut(s)	46, 374
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	229, 394
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	50
BshTI	ACCGGT	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	46, 374
BsmAI	GTCTC	2 cut(s)	2, 103
BsmBI	CGTCTC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	61, 324, 377, 457
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	169, 379
BspPI	GGATC	3 cut(s)	372, 385, 452
BspQI	GCTCTTC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	229, 394
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	372, 522
BssMI	GATC	4 cut(s)	61, 324, 377, 457
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	22, 29, 548
BstDEI	CTNAG	2 cut(s)	198, 510
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	364, 532
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	4 cut(s)	64, 327, 380, 460
BstMAI	GTCTC	2 cut(s)	2, 103
BstMBI	GATC	4 cut(s)	61, 324, 377, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	377, 457
BstYI	RGATCY	2 cut(s)	377, 457
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	364, 532
Cac8I	GCNNGC	3 cut(s)	22, 29, 548
Cfr10I	RCCGGY	1 cut(s)	484
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	232, 387, 433
CspAI	ACCGGT	1 cut(s)	484
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	4 cut(s)	31, 50, 322, 546
CviKI_1	RGCY	4 cut(s)	31, 50, 322, 546
CviQI	GTAC	3 cut(s)	232, 387, 433
DdeI	CTNAG	2 cut(s)	198, 510
DpnI	GATC	4 cut(s)	63, 326, 379, 459
DpnII	GATC	4 cut(s)	61, 324, 377, 457
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	126, 297, 335, 585
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	351, 539
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	337
HinfI	GANTC	3 cut(s)	92, 115, 284
HpaII	CCGG	1 cut(s)	485
Hpy166II	GTNNAC	3 cut(s)	360, 435, 519
Hpy188I	TCNGA	3 cut(s)	61, 103, 427
Hpy188III	TCNNGA	2 cut(s)	221, 238
Hpy8I	GTNNAC	3 cut(s)	360, 435, 519
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	40, 331, 536, 550
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	4, 249, 350, 455, 476, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	198, 510
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	61, 324, 377, 457
LguI	GCTCTTC	1 cut(s)	596
LpnPI	CCDG	6 cut(s)	234, 242, 251, 273, 375, 498
Lsp1109I	GCAGC	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	109, 146, 505
MalI	GATC	4 cut(s)	63, 326, 379, 459
MboI	GATC	4 cut(s)	61, 324, 377, 457
MboII	GAAGA	2 cut(s)	223, 396
MflI	RGATCY	2 cut(s)	377, 457
MluCI	AATT	5 cut(s)	215, 257, 410, 468, 491
MlyI	GAGTC	3 cut(s)	101, 124, 278
MnlI	CCTC	6 cut(s)	65, 92, 95, 124, 273, 378
MseI	TTAA	2 cut(s)	143, 275
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	4 cut(s)	61, 324, 377, 457
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	169, 379
PciSI	GCTCTTC	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	3 cut(s)	100, 123, 278
PpsI	GAGTC	3 cut(s)	100, 123, 278
PspN4I	GGNNCC	2 cut(s)	169, 379
PsuI	RGATCY	2 cut(s)	377, 457
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	3 cut(s)	233, 388, 434
RsaNI	GTAC	3 cut(s)	232, 387, 433
SapI	GCTCTTC	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	143, 275
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	4 cut(s)	61, 324, 377, 457
ScaI	AGTACT	2 cut(s)	233, 388
SchI	GAGTC	3 cut(s)	101, 124, 278
SetI	ASST	3 cut(s)	57, 84, 324
SfcI	CTRYAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	215, 257, 410, 468, 491
SspI	AATATT	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	87
TasI	AATT	5 cut(s)	215, 257, 410, 468, 491
TatI	WGTACW	3 cut(s)	231, 386, 432
Tru1I	TTAA	2 cut(s)	143, 275
Tru9I	TTAA	2 cut(s)	143, 275
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	85
XapI	RAATTY	3 cut(s)	215, 257, 491
ZrmI	AGTACT	2 cut(s)	233, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.