AT2G40600

O-acetyl-ADP-ribose deacetylase MACROD2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004383
Physical Location & Seq
Reverse (-)
16946824 .. 16948712
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40600.1

Sequence Viewer

Length: 774 bp
ATGAGACGACAATGGTTGACCTCTGGACTCTCGAGTCTCCCTGGATTACTACACTCGAGCTCGACGATCCTTAGACCAACTTCGTCTTCTTCCTCGAGAGCTTCTCTGATCTCCTTCGCCGTTAATAATTTCCACACGATCGCTTCTTCTTCGTCTACTCTCTCTTCTCGCTTGACAACTGTATCATCGTCCATGGCTTCTGGTGACGAAGGAGCTGTTTTCAATTTGTCTGATTCTAGCCTTCTTAAGATCCTTAAAGGAGACATCACCAAGTGGTCTGTTGATTCTTCCTCCGATGCTATTGTCAATCCAGCAAATGAGCGTATGTTAGGTGGTGGTGGTGCTGATGGAGCAATACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTTCCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACTCAGATGTCAACCCTCAAGAATCTCTCACCAATTCGTACAAAAATAGTCTGAGAGTTGCAAAGGAAAACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAGGTGCATTTTGTTTTGTTCGCGGACGACATATTCAGCGTATGGGTAAACAAAGCAAAGGAGGTGCTACAAAAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Macro

Protein Analysis

257

Amino Acids

27.48

Weight (kDa)

8.42

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Macro PF01661 102 - 218 2.9e-42 Macro domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 33, 515
AccI GTMKAC 1 cut(s) 155
AccII CGCG 2 cut(s) 478, 716
AciI CCGC 1 cut(s) 716
AclWI GGATC 2 cut(s) 61, 244
AcuI CTGAAG 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 273
AfaI GTAC 1 cut(s) 548
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 223, 663
AjnI CCWGG 2 cut(s) 40, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 6 cut(s) 60, 101, 215, 365, 386, 644
AluI AGCT 6 cut(s) 60, 101, 215, 365, 386, 644
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 41, 255
AlwI GGATC 2 cut(s) 61, 244
Ama87I CYCGRG 3 cut(s) 31, 55, 94
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 4 cut(s) 365, 386, 644, 647
AspS9I GGNCC 2 cut(s) 371, 497
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 3 cut(s) 215, 259, 529
AvaI CYCGRG 3 cut(s) 31, 55, 94
AvaII GGWCC 1 cut(s) 497
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 4 cut(s) 352, 373, 631, 634
BccI CCATC 2 cut(s) 341, 674
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 42, 417
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 41, 255
BfaI CTAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 245
BisI GCNGC 4 cut(s) 366, 387, 645, 648
BlsI GCNGC 4 cut(s) 367, 388, 646, 649
Bme1390I CCNGG 3 cut(s) 42, 417, 456
Bme18I GGWCC 1 cut(s) 497
BmeT110I CYCGRG 3 cut(s) 31, 55, 94
BmgT120I GGNCC 2 cut(s) 371, 497
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 3 cut(s) 42, 417, 456
BmsI GCATC 2 cut(s) 286, 482
BpiI GAAGAC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpmI CTGGAG 2 cut(s) 438, 456
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 40, 192
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 591
BseBI CCWGG 2 cut(s) 42, 417
BseDI CCNNGG 2 cut(s) 40, 192
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 3 cut(s) 394, 525, 551
BseNI ACTGG 1 cut(s) 439
BseXI GCAGC 4 cut(s) 352, 373, 631, 634
BseYI CCCAGC 1 cut(s) 368
Bsh1236I CGCG 2 cut(s) 478, 716
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 3 cut(s) 31, 55, 94
BsiSI CCGG 1 cut(s) 455
BsmAI GTCTC 2 cut(s) 41, 255
BsnI GGCC 1 cut(s) 373
BsoBI CYCGRG 3 cut(s) 31, 55, 94
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 4 cut(s) 66, 108, 138, 249
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 1 cut(s) 716
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 3 cut(s) 393, 524, 552
BspFNI CGCG 2 cut(s) 478, 716
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 61, 244
BspTI CTTAAG 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 591
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 40, 192
BssMI GATC 4 cut(s) 66, 108, 138, 249
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 42, 417
Bst4CI ACNGT 2 cut(s) 181, 493
Bst6I CTCTTC 1 cut(s) 169
BstAFI CTTAAG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 391, 471
BstDEI CTNAG 4 cut(s) 71, 380, 511, 560
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 2 cut(s) 478, 716
BstKTI GATC 4 cut(s) 69, 111, 141, 252
BstMAI GTCTC 2 cut(s) 41, 255
BstMBI GATC 4 cut(s) 66, 108, 138, 249
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 350, 475, 602
BstNI CCWGG 2 cut(s) 42, 417
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 3 cut(s) 40, 415, 454
BstUI CGCG 2 cut(s) 478, 716
BstV1I GCAGC 4 cut(s) 352, 373, 631, 634
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 2 cut(s) 391, 471
Cfr13I GGNCC 2 cut(s) 371, 497
Csp6I GTAC 1 cut(s) 547
CviAII CATG 2 cut(s) 193, 390
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 4 cut(s) 71, 380, 511, 560
DpnI GATC 4 cut(s) 68, 110, 140, 251
DpnII GATC 4 cut(s) 66, 108, 138, 249
DraI TTTAAA 1 cut(s) 691
DraIII CACNNNGTG 1 cut(s) 273
DrdI GACNNNNNNGTC 2 cut(s) 33, 515
DseDI GACNNNNNNGTC 2 cut(s) 33, 515
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 629
Eco47I GGWCC 1 cut(s) 497
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 3 cut(s) 31, 55, 94
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 40, 415
EcoRV GATATC 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 196, 393
FaiI YATR 9 cut(s) 194, 326, 360, 391, 396, 507, 608, 725, 736
FatI CATG 2 cut(s) 192, 389
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 4 cut(s) 366, 387, 645, 648
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 4 cut(s) 366, 387, 645, 648
FspBI CTAG 1 cut(s) 237
GluI GCNGC 4 cut(s) 366, 387, 645, 648
GsaI CCCAGC 1 cut(s) 372
GsuI CTGGAG 2 cut(s) 438, 456
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 455
Hin1II CATG 2 cut(s) 196, 393
HincII GTYRAC 2 cut(s) 18, 520
HindII GTYRAC 2 cut(s) 18, 520
HinfI GANTC 8 cut(s) 27, 34, 233, 284, 420, 484, 509, 530
HpaII CCGG 1 cut(s) 455
HphI GGTGA 3 cut(s) 215, 259, 529
Hpy166II GTNNAC 4 cut(s) 18, 156, 520, 742
Hpy188I TCNGA 6 cut(s) 108, 232, 295, 383, 514, 561
Hpy188III TCNNGA 5 cut(s) 24, 31, 96, 404, 527
Hpy8I GTNNAC 4 cut(s) 18, 156, 520, 742
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 124, 203, 251
HpyCH4III ACNGT 2 cut(s) 181, 493
HpyCH4V TGCA 5 cut(s) 389, 473, 569, 596, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 475, 602
HpyF3I CTNAG 4 cut(s) 71, 380, 511, 560
Hsp92II CATG 2 cut(s) 196, 393
Kzo9I GATC 4 cut(s) 66, 108, 138, 249
LmnI GCTCC 2 cut(s) 212, 350
Lsp1109I GCAGC 4 cut(s) 352, 373, 631, 634
LweI GCATC 2 cut(s) 286, 482
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 203
MalI GATC 4 cut(s) 68, 110, 140, 251
MboI GATC 4 cut(s) 66, 108, 138, 249
MboII GAAGA 6 cut(s) 78, 81, 138, 141, 156, 279
MflI RGATCY 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 5 cut(s) 127, 223, 447, 541, 674
MlyI GAGTC 4 cut(s) 21, 43, 429, 503
MmeI TCCRAC 2 cut(s) 455, 475
MnlI CCTC 7 cut(s) 31, 103, 301, 391, 534, 688, 748
MseI TTAA 5 cut(s) 123, 246, 255, 462, 690
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 3 cut(s) 42, 417, 456
MvaI CCWGG 2 cut(s) 42, 417
MvnI CGCG 2 cut(s) 478, 716
MwoI GCNNNNNNNGC 3 cut(s) 350, 475, 602
NciI CCSGG 1 cut(s) 456
NcoI CCATGG 1 cut(s) 192
NdeII GATC 4 cut(s) 66, 108, 138, 249
NlaIII CATG 2 cut(s) 196, 393
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 393
PaeI GCATGC 1 cut(s) 393
PaeR7I CTCGAG 3 cut(s) 31, 55, 94
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PfeI GAWTC 4 cut(s) 233, 284, 484, 530
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 4 cut(s) 367, 388, 646, 649
Ple19I CGATCG 1 cut(s) 141
PleI GAGTC 4 cut(s) 21, 42, 428, 503
PpsI GAGTC 4 cut(s) 21, 42, 428, 503
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 40, 415
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 40, 415
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 371, 497
PspXI VCTCGAGB 1 cut(s) 55
PsuI RGATCY 1 cut(s) 249
PvuI CGATCG 1 cut(s) 141
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 5 cut(s) 123, 246, 255, 462, 690
SatI GCNGC 4 cut(s) 366, 387, 645, 648
Sau3AI GATC 4 cut(s) 66, 108, 138, 249
Sau96I GGNCC 2 cut(s) 371, 497
SchI GAGTC 4 cut(s) 21, 43, 429, 503
ScrFI CCNGG 3 cut(s) 42, 417, 456
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 2 cut(s) 286, 482
Sfr274I CTCGAG 3 cut(s) 31, 55, 94
SinI GGWCC 1 cut(s) 497
SlaI CTCGAG 3 cut(s) 31, 55, 94
SmlI CTYRAG 5 cut(s) 31, 55, 94, 245, 525
SmoI CTYRAG 5 cut(s) 31, 55, 94, 245, 525
SphI GCATGC 1 cut(s) 393
Sse9I AATT 5 cut(s) 127, 223, 447, 541, 674
SsiI CCGC 1 cut(s) 716
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 40, 415, 454
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 181, 493
TaqI TCGA 4 cut(s) 32, 56, 62, 95
TasI AATT 5 cut(s) 127, 223, 447, 541, 674
TfiI GAWTC 4 cut(s) 233, 284, 484, 530
Tru1I TTAA 5 cut(s) 123, 246, 255, 462, 690
Tru9I TTAA 5 cut(s) 123, 246, 255, 462, 690
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 4 cut(s) 365, 386, 644, 647
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 654
TspGWI ACGGA 2 cut(s) 413, 639
TspRI CASTG 1 cut(s) 496
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 497
XceI RCATGY 1 cut(s) 393
XhoI CTCGAG 3 cut(s) 31, 55, 94
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.