Rh1AG376900

Appr-1'-p processing enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004383
Physical Location & Seq
Forward (+)
60944540 .. 60946311
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG376900.1

Sequence Viewer

Length: 747 bp
ATGGCGAGTGGAGAAGGAGCAGTTCGGTTTCCTTTGTCTGATTCAAGCCCTCTCGTGATACAAATGGGGGATATCACCAAGTGGTTCGTCGACGGCTCCACTGACGCCATTCTACTTCATCTTCTTTATTCGTTGGGAGAAATTTACATGGAAATCTTGAGTATGTTCGTGTCTTTTTCATTGTTTTGTGTTATCTTCTGGGCTTGTGATGCTCTCTGCTTTAAGTTATACGTGTATCAGTCTATACATAGGGCTGCTGGCCCGGATCTTCTACAGGCATGCTATGGTGTCCCCGAAGCCAGGCCAGGCGTCCGCTGCCCCACTGGAGAAGCTAGAATTACCCTAGGGTTTAAGTTGCCTGCGTCTCATGTAATTCACACTGTTGGACCTGTCTACCGTCCTGGTAGCGTCTATCCTCCTGCTAACAACCCTGAAGTTTATCTGAGCTCTGCGTATAGGAATAGCTTGAGCATAGCCAAAGCACACAACATTCAGTATGTTGCGTTTCCTCCCATATCTTGTGGTTCGTATGGATATCCTTATGATGAAGCTGCCGAAGTGTCTCTGTCCACAATCAAGGAATCCGTGAATGACATAAAGGAGGTGCGCACTTTGTTCATAAATCGGAAGTTATTTACAATGTCTGGTTGGAAAAGGCAAAGAAATTGCTTAAAGCCTAATATGTACAAGGAACGAGGAATAAGTAGCTTGCAGATGTATAAGTCGTTCTGTCAGTTTGCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Macro

Protein Analysis

248

Amino Acids

27.72

Weight (kDa)

8.56

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Macro PF01661 79 - 187 2.9e-29 Macro domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 608
AccI GTMKAC 2 cut(s) 90, 393
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 2 cut(s) 105, 309
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 1 cut(s) 300
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 45
AjnI CCWGG 3 cut(s) 299, 304, 400
AluBI AGCT 5 cut(s) 332, 447, 465, 551, 708
AluI AGCT 5 cut(s) 332, 447, 465, 551, 708
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 2 cut(s) 369, 567
AlwI GGATC 1 cut(s) 273
AoxI GGCC 2 cut(s) 259, 302
ApeKI GCWGC 3 cut(s) 254, 315, 551
ApoI RAATTY 1 cut(s) 141
AspA2I CCTAGG 1 cut(s) 343
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 260, 386
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 386
AvrII CCTAGG 1 cut(s) 343
BanII GRGCYC 1 cut(s) 449
BauI CACGAG 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 3 cut(s) 241, 302, 538
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 3 cut(s) 301, 306, 402
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 369, 567
BfaI CTAG 2 cut(s) 333, 344
BfmI CTRYAG 1 cut(s) 272
BisI GCNGC 3 cut(s) 255, 316, 552
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 3 cut(s) 256, 317, 553
Bme1390I CCNGG 4 cut(s) 263, 301, 306, 402
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 260, 386
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 4 cut(s) 263, 301, 306, 402
BmsI GCATC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 178, 487
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 105, 309
BsaJI CCNNGG 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 747
BseBI CCWGG 3 cut(s) 301, 306, 402
BseDI CCNNGG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 3 cut(s) 241, 302, 538
BshFI GGCC 2 cut(s) 261, 304
BsiHKAI GWGCWC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 369, 567
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 2 cut(s) 261, 304
Bsp1286I GDGCHC 1 cut(s) 449
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 313
BspANI GGCC 2 cut(s) 261, 304
BspCNI CTCAG 1 cut(s) 435
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 1 cut(s) 265
BssNI GRCGYC 2 cut(s) 105, 309
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 3 cut(s) 301, 306, 402
Bst4CI ACNGT 2 cut(s) 382, 398
BstACI GRCGYC 2 cut(s) 105, 309
BstAUI TGTACA 1 cut(s) 684
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 4 cut(s) 259, 280, 360, 710
BstDEI CTNAG 1 cut(s) 443
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 369, 567
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 209, 315
BstNI CCWGG 3 cut(s) 301, 306, 402
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 4 cut(s) 261, 299, 304, 400
BstSFI CTRYAG 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 241, 302, 538
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 2 cut(s) 261, 304
BtsIMutI CAGTG 3 cut(s) 99, 321, 378
Cac8I GCNNGC 4 cut(s) 259, 280, 360, 710
CfoI GCGC 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 260, 386
CseI GACGC 4 cut(s) 113, 298, 351, 397
Csp6I GTAC 1 cut(s) 685
CviAII CATG 3 cut(s) 148, 279, 368
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 1 cut(s) 443
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DraIII CACNNNGTG 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 449
Eco32I GATATC 2 cut(s) 73, 536
Eco47I GGWCC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 447
EcoRII CCWGG 3 cut(s) 299, 304, 400
EcoRV GATATC 2 cut(s) 73, 536
EcoT14I CCWWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 3 cut(s) 151, 282, 371
FaqI GGGAC 1 cut(s) 275
FatI CATG 3 cut(s) 147, 278, 367
FblI GTMKAC 2 cut(s) 90, 393
Fnu4HI GCNGC 3 cut(s) 255, 316, 552
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 3 cut(s) 255, 316, 552
FspAI RTGCGCAY 1 cut(s) 608
FspBI CTAG 2 cut(s) 333, 344
FspI TGCGCA 1 cut(s) 608
GlaI GCGC 1 cut(s) 608
GluI GCNGC 3 cut(s) 255, 316, 552
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 2 cut(s) 261, 304
HapII CCGG 1 cut(s) 263
HgaI GACGC 4 cut(s) 113, 298, 351, 397
HhaI GCGC 1 cut(s) 609
Hin1I GRCGYC 2 cut(s) 105, 309
Hin1II CATG 3 cut(s) 151, 282, 371
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 41, 581
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 91, 394, 570
Hpy188I TCNGA 3 cut(s) 40, 444, 627
Hpy188III TCNNGA 2 cut(s) 55, 157
Hpy8I GTNNAC 3 cut(s) 91, 394, 570
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 382, 398
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 712, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 315
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 2 cut(s) 105, 309
Hsp92II CATG 3 cut(s) 151, 282, 371
HspAI GCGC 1 cut(s) 607
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 17, 101
Lsp1109I GCAGC 3 cut(s) 241, 302, 538
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 333, 344
MaeII ACGT 1 cut(s) 231
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 3 cut(s) 113, 187, 260
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 4 cut(s) 141, 336, 372, 664
MmeI TCCRAC 2 cut(s) 364, 629
MnlI CCTC 5 cut(s) 60, 426, 519, 595, 689
MseI TTAA 3 cut(s) 222, 351, 671
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 4 cut(s) 263, 301, 306, 402
MvaI CCWGG 3 cut(s) 301, 306, 402
MwoI GCNNNNNNNGC 2 cut(s) 209, 315
NciI CCSGG 1 cut(s) 263
NdeII GATC 1 cut(s) 265
NlaIII CATG 3 cut(s) 151, 282, 371
NlaIV GGNNCC 1 cut(s) 97
NsbI TGCGCA 1 cut(s) 608
NspI RCATGY 1 cut(s) 282
PaeI GCATGC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 41, 581
PkrI GCNGC 3 cut(s) 256, 317, 553
Ppu21I YACGTR 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 449
Psp6I CCWGG 3 cut(s) 299, 304, 400
PspGI CCWGG 3 cut(s) 299, 304, 400
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 260, 386
PsrI GAACNNNNNNTAC 2 cut(s) 710, 742
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
SacI GAGCTC 1 cut(s) 449
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 3 cut(s) 222, 351, 671
SatI GCNGC 3 cut(s) 255, 316, 552
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 260, 386
ScrFI CCNGG 4 cut(s) 263, 301, 306, 402
SduI GDGCHC 1 cut(s) 449
SetI ASST 8 cut(s) 234, 334, 391, 449, 467, 553, 606, 710
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 272
SgrDI CGTCGACG 1 cut(s) 89
SinI GGWCC 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 157, 466
SmoI CTYRAG 2 cut(s) 157, 466
SphI GCATGC 1 cut(s) 282
Sse9I AATT 4 cut(s) 141, 336, 372, 664
SsiI CCGC 1 cut(s) 313
SspMI CTAG 2 cut(s) 333, 344
SstI GAGCTC 1 cut(s) 449
StyD4I CCNGG 4 cut(s) 261, 299, 304, 400
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 382, 398
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 90
TasI AATT 4 cut(s) 141, 336, 372, 664
TatI WGTACW 1 cut(s) 684
TfiI GAWTC 2 cut(s) 41, 581
Tru1I TTAA 3 cut(s) 222, 351, 671
Tru9I TTAA 3 cut(s) 222, 351, 671
TscAI CASTG 3 cut(s) 106, 328, 385
TseI GCWGC 3 cut(s) 254, 315, 551
TspDTI ATGAA 4 cut(s) 107, 168, 561, 607
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 3 cut(s) 106, 328, 385
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 1 cut(s) 141
XceI RCATGY 1 cut(s) 282
XmaJI CCTAGG 1 cut(s) 343
XmiI GTMKAC 2 cut(s) 90, 393
XspI CTAG 2 cut(s) 333, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.