Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004383

Physical Location & Seq

Genomic Coordinates Forward (+)

27084087 .. 27086392

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCCAGCCACCTGAGTAAAGCATCTAAATTTCTCAGCTCAGCTTTCACACTCAGACTCGCACCAAACCCTGCAAAATTTCGCTGCTCCGTTAAGCTTTCAACCATGTCTAATGGAGAAGGAGCAGTTCGCTTCCCTTTATCTGCTTCAAGCACTCTTGTCATCCAAAAGGGAGATATAACCAAGTGGTTCATCGACGGCTCCACAGACGCCATCGTTAATCCAGCAAATGAGCGAATGCTTGGAGGTGGTGGTGCAGATGGAGCTATACATAGGGCTGCTGGCCCAGATCTTCTACAAGCATGCTATAGTGTCCCAGAAGTCAGGCCTGGTGTCCGTTGTCCCACTGGAGAAGCAAGGATTACCCAAGGTTTTAAGTTGCCTGCTTCTCATGTAATTCACACTGTTGGACCGATCTATCGTTCTGACAGTAACCCGGAAGTTTATCTGAGTGCTGCATACAGGAACAGCTTGAGCATAGCCAAATCAAACAACATTCAGTATGTTGCATTTCCTGCCATTTCTTGTGGCGTGTATGGATATCCTTATGATGAAGCAGCCACAGTAGCTTTGTCTACAATTAGAGAGTCTGTGAATGACCTAAAGGAGGTGCACTTTGTTCTGTTTGCAGATGATATTTACACTGTTTGGTTGGACAAGGCCAATGAATTGCTTAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Macro

Protein Analysis

228

Amino Acids

24.43

Weight (kDa)

8.31

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40600
fragaria_vesca	FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700
malus_domestica	MD01G1164200.v1.1
prunus_persica	Prupe.2G262000_v2.0.a1
pyrus_communis	pycom01g17850
rosa_chinensis	RchiOBHm_Chr1g0371901 RchiOBHm_Chr1g0371911 RchiOBHm_Chr1g0371921
rosa_laevigata	RLG00000026936 RLG00000026937
rosa_multiflora	Rmu_co8357249.1_g000001 Rmu_sc0001755.1_g000046
rosa_roxburghii	Rroxscaffold_4G00285380 Rroxscaffold_4G00285390
rosa_rugosa	Rorug01G0367200.1 Rorug01G0367300
rosa_samantha	Rh1AG376900 Rh1AG377000 Rh1BG340200 Rh1BG340300 Rh1CG353200 Rh1CG353400 Rh1DG371200
rosa_wichuraiana	Rw1G033160 Rw1G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	29, 77
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	2 cut(s)	102, 150
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	7 cut(s)	39, 44, 97, 266, 471, 569, 680
AluI	AGCT	7 cut(s)	39, 44, 97, 266, 471, 569, 680
Alw21I	GWGCWC	1 cut(s)	615
Alw44I	GTGCAC	1 cut(s)	611
AoxI	GGCC	3 cut(s)	283, 326, 660
ApaLI	GTGCAC	1 cut(s)	611
ApeKI	GCWGC	4 cut(s)	84, 278, 455, 557
ApoI	RAATTY	2 cut(s)	29, 77
AspS9I	GGNCC	2 cut(s)	284, 410
AsuC2I	CCSGG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	4 cut(s)	71, 265, 442, 569
BccI	CCATC	2 cut(s)	221, 254
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	307
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	4 cut(s)	85, 279, 456, 558
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	4 cut(s)	86, 280, 457, 559
Bme1390I	CCNGG	2 cut(s)	330, 437
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	284, 410
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	330, 437
BmsI	GCATC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	5 cut(s)	5, 49, 54, 67, 440
BseNI	ACTGG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	4 cut(s)	71, 265, 442, 569
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	285, 328, 662
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	2 cut(s)	299, 327
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	299, 327
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	285, 328, 662
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	289, 414
Bsp1720I	GCTNAGC	1 cut(s)	40
BspANI	GGCC	3 cut(s)	285, 328, 662
BspCNI	CTCAG	5 cut(s)	6, 48, 53, 66, 441
BspLI	GGNNCC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	2 cut(s)	289, 414
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	4 cut(s)	406, 431, 565, 646
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	283, 304, 384
BstDEI	CTNAG	5 cut(s)	14, 35, 40, 53, 449
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	292, 417
BstMBI	GATC	2 cut(s)	289, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 515, 566
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	328, 435
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	615
BstV1I	GCAGC	4 cut(s)	71, 265, 442, 569
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	285, 328, 662
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	345, 402, 642
Cac8I	GCNNGC	3 cut(s)	283, 304, 384
Cfr13I	GGNCC	2 cut(s)	284, 410
CseI	GACGC	1 cut(s)	218
CviAII	CATG	3 cut(s)	106, 303, 392
DdeI	CTNAG	5 cut(s)	14, 35, 40, 53, 449
DpnI	GATC	2 cut(s)	291, 416
DpnII	GATC	2 cut(s)	289, 414
Eco130I	CCWWGG	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	410
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	109, 306, 395
FaqI	GGGAC	2 cut(s)	299, 327
FatI	CATG	3 cut(s)	105, 302, 391
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	4 cut(s)	85, 279, 456, 558
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	4 cut(s)	85, 279, 456, 558
GluI	GCNGC	4 cut(s)	85, 279, 456, 558
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	285, 328, 662
HapII	CCGG	1 cut(s)	437
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	109, 306, 395
HindIII	AAGCTT	2 cut(s)	95, 678
HinfI	GANTC	2 cut(s)	57, 587
HpaII	CCGG	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	576, 613
Hpy188I	TCNGA	3 cut(s)	56, 427, 450
Hpy8I	GTNNAC	2 cut(s)	576, 613
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	4 cut(s)	406, 431, 565, 646
HpyCH4V	TGCA	6 cut(s)	74, 257, 458, 509, 613, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 515, 566
HpyF3I	CTNAG	5 cut(s)	14, 35, 40, 53, 449
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	109, 306, 395
Kzo9I	GATC	2 cut(s)	289, 414
LmnI	GCTCC	4 cut(s)	92, 122, 206, 263
Lsp1109I	GCAGC	4 cut(s)	71, 265, 442, 569
LweI	GCATC	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	291, 416
MboI	GATC	2 cut(s)	289, 414
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	615
MluCI	AATT	5 cut(s)	29, 77, 396, 579, 668
MlyI	GAGTC	2 cut(s)	51, 596
MmeI	TCCRAC	2 cut(s)	388, 633
MnlI	CCTC	2 cut(s)	239, 601
MseI	TTAA	5 cut(s)	93, 219, 375, 675, 682
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	330, 437
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	263, 515, 566
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	2 cut(s)	289, 414
NlaIII	CATG	3 cut(s)	109, 306, 395
NlaIV	GGNNCC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	328
PctI	GAATGC	1 cut(s)	243
PkrI	GCNGC	4 cut(s)	86, 280, 457, 559
PleI	GAGTC	2 cut(s)	51, 595
PpsI	GAGTC	2 cut(s)	51, 595
Psp6I	CCWGG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	284, 410
PsuI	RGATCY	1 cut(s)	289
SaqAI	TTAA	5 cut(s)	93, 219, 375, 675, 682
SatI	GCNGC	4 cut(s)	85, 279, 456, 558
Sau3AI	GATC	2 cut(s)	289, 414
Sau96I	GGNCC	2 cut(s)	284, 410
SchI	GAGTC	2 cut(s)	51, 596
ScrFI	CCNGG	2 cut(s)	330, 437
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	1 cut(s)	32
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	5 cut(s)	29, 77, 396, 579, 668
SseBI	AGGCCT	1 cut(s)	328
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	2 cut(s)	328, 435
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	4 cut(s)	406, 431, 565, 646
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	5 cut(s)	29, 77, 396, 579, 668
Tru1I	TTAA	5 cut(s)	93, 219, 375, 675, 682
Tru9I	TTAA	5 cut(s)	93, 219, 375, 675, 682
TscAI	CASTG	3 cut(s)	352, 409, 649
TseI	GCWGC	4 cut(s)	84, 278, 455, 557
TspDTI	ATGAA	3 cut(s)	181, 567, 681
TspGWI	ACGGA	2 cut(s)	79, 326
TspRI	CASTG	3 cut(s)	352, 409, 649
VneI	GTGCAC	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	410
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	2 cut(s)	29, 77
XceI	RCATGY	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.