Rh1CG353200

Appr-1'-p processing enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004383
Physical Location & Seq
Forward (+)
62891939 .. 62898704
6766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG353200.1

Sequence Viewer

Length: 555 bp
ATGAGCGAATGCTTGGAGGTGGTGGTGGAGATGGCGCTAAATAATGGTTTCCTAATGAAGAACTTTAGGAATGAACCGACTTTTAGTATACTGATTTTTGTTGACCTTGCAGCTATACATAGGGCTGCTGGCCCGGATCTTCTACAGGCATGCTATGGTGTCCCCGAAGCCAGGCCAGGCGTCCGCTGCCCCACTGGAGAAGCTAGAATTACCCTAGGGTTTAAGTTGCCTGCGTCTCATGTAATTCACACTGTTGGACCTGTCTACCATCCTGGTAGCGTCTACCCTCCTGCTAACAACCCTGAAGTTTATCTGAGCTCTGCATCTAGGAATAGCTTGAGCATAGCCAAAGCACACAACATTCAGTATGTTGCGTTTCCTCCCATATCTTGTGGTTCGTATGGATATCCTTATGATGAAGCTGCCGAAGTGTCTCTATCCACAATTAAGGAATCCGTGAATGACATAAAGGAGTTCGAAATGGCCACTTTTGGGACTGAGATGGTGCCAGCGAATCCAGCCATTGAGGGCGGTGCGGCGACTGGTGGCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Macro

Protein Analysis

184

Amino Acids

19.62

Weight (kDa)

5.15

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Macro PF01661 37 - 144 1.6e-28 Macro domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AccI GTMKAC 3 cut(s) 88, 264, 282
AciI CCGC 3 cut(s) 184, 531, 536
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 171, 492
AjnI CCWGG 3 cut(s) 170, 175, 271
AluBI AGCT 5 cut(s) 113, 203, 318, 336, 422
AluI AGCT 5 cut(s) 113, 203, 318, 336, 422
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 240, 438
AlwI GGATC 1 cut(s) 144
AoxI GGCC 3 cut(s) 130, 173, 483
ApeKI GCWGC 4 cut(s) 110, 125, 186, 422
AspA2I CCTAGG 1 cut(s) 214
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 131, 257
AsuC2I CCSGG 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 477
AvaII GGWCC 1 cut(s) 257
AvrII CCTAGG 1 cut(s) 214
BalI TGGCCA 1 cut(s) 485
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 112, 122, 173, 409
BccI CCATC 3 cut(s) 25, 276, 496
BciT130I CCWGG 3 cut(s) 172, 177, 273
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 240, 438
BfaI CTAG 3 cut(s) 204, 215, 327
BfmI CTRYAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 5 cut(s) 111, 126, 187, 423, 537
BlnI CCTAGG 1 cut(s) 214
BlsI GCNGC 5 cut(s) 112, 127, 188, 424, 538
Bme1390I CCNGG 4 cut(s) 134, 172, 177, 273
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 131, 257
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 4 cut(s) 134, 172, 177, 273
BmsI GCATC 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 358
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 492
Bse1I ACTGG 2 cut(s) 199, 547
BseBI CCWGG 3 cut(s) 172, 177, 273
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 171, 492
BseMII CTCAG 2 cut(s) 305, 489
BseNI ACTGG 2 cut(s) 199, 547
BseXI GCAGC 4 cut(s) 112, 122, 173, 409
BshFI GGCC 3 cut(s) 132, 175, 485
BshNI GGYRCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 2 cut(s) 146, 508
BslI CCNNNNNNNGG 2 cut(s) 171, 492
BsmAI GTCTC 2 cut(s) 240, 438
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 146, 508
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 3 cut(s) 132, 175, 485
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 3 cut(s) 184, 531, 536
BspANI GGCC 3 cut(s) 132, 175, 485
BspCNI CTCAG 2 cut(s) 306, 490
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 505
BsrI ACTGG 2 cut(s) 199, 547
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 136
BssNAI GTATAC 1 cut(s) 89
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 214
Bst1107I GTATAC 1 cut(s) 89
Bst2UI CCWGG 3 cut(s) 172, 177, 273
Bst4CI ACNGT 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 4 cut(s) 130, 151, 231, 510
BstDEI CTNAG 2 cut(s) 314, 498
BstF5I GGATG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 240, 438
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 186, 518
BstNI CCWGG 3 cut(s) 172, 177, 273
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 4 cut(s) 132, 170, 175, 271
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 4 cut(s) 112, 122, 173, 409
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 89
BsuRI GGCC 3 cut(s) 132, 175, 485
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 192, 249
Cac8I GCNNGC 4 cut(s) 130, 151, 231, 510
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 131, 257
CseI GACGC 3 cut(s) 169, 222, 268
CviAII CATG 2 cut(s) 150, 239
DdeI CTNAG 2 cut(s) 314, 498
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 318
EcoRII CCWGG 3 cut(s) 170, 175, 271
EcoRV GATATC 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 2 cut(s) 153, 242
FaqI GGGAC 2 cut(s) 146, 508
FatI CATG 2 cut(s) 149, 238
FblI GTMKAC 3 cut(s) 88, 264, 282
Fnu4HI GCNGC 5 cut(s) 111, 126, 187, 423, 537
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 5 cut(s) 111, 126, 187, 423, 537
FspBI CTAG 3 cut(s) 204, 215, 327
GlaI GCGC 1 cut(s) 36
GluI GCNGC 5 cut(s) 111, 126, 187, 423, 537
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 3 cut(s) 132, 175, 485
HapII CCGG 1 cut(s) 134
HgaI GACGC 3 cut(s) 169, 222, 268
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 153, 242
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 452, 514
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 4 cut(s) 89, 103, 265, 283
Hpy188I TCNGA 1 cut(s) 315
Hpy8I GTNNAC 4 cut(s) 89, 103, 265, 283
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 110, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 518
HpyF3I CTNAG 2 cut(s) 314, 498
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 153, 242
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 136
Lsp1109I GCAGC 4 cut(s) 112, 122, 173, 409
LweI GCATC 1 cut(s) 332
MaeI CTAG 3 cut(s) 204, 215, 327
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 70, 131
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 3 cut(s) 207, 243, 444
MluNI TGGCCA 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 10, 297, 390, 520
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MseI TTAA 2 cut(s) 222, 447
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 4 cut(s) 134, 172, 177, 273
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 3 cut(s) 172, 177, 273
MwoI GCNNNNNNNGC 2 cut(s) 186, 518
NciI CCSGG 1 cut(s) 134
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 153, 242
NlaIV GGNNCC 1 cut(s) 507
NspI RCATGY 1 cut(s) 153
NspV TTCGAA 1 cut(s) 477
PaeI GCATGC 1 cut(s) 153
PctI GAATGC 1 cut(s) 14
PfeI GAWTC 2 cut(s) 452, 514
PkrI GCNGC 5 cut(s) 112, 127, 188, 424, 538
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 3 cut(s) 170, 175, 271
PspGI CCWGG 3 cut(s) 170, 175, 271
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 131, 257
PsuI RGATCY 1 cut(s) 136
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 222, 447
SatI GCNGC 5 cut(s) 111, 126, 187, 423, 537
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 2 cut(s) 131, 257
ScrFI CCNGG 4 cut(s) 134, 172, 177, 273
SduI GDGCHC 1 cut(s) 320
SetI ASST 8 cut(s) 21, 108, 115, 205, 262, 320, 338, 424
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 143
SfuI TTCGAA 1 cut(s) 477
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
SphI GCATGC 1 cut(s) 153
Sse9I AATT 3 cut(s) 207, 243, 444
SsiI CCGC 3 cut(s) 184, 531, 536
SspMI CTAG 3 cut(s) 204, 215, 327
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 4 cut(s) 132, 170, 175, 271
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 477
TasI AATT 3 cut(s) 207, 243, 444
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 2 cut(s) 452, 514
Tru1I TTAA 2 cut(s) 222, 447
Tru9I TTAA 2 cut(s) 222, 447
TscAI CASTG 2 cut(s) 199, 256
TseI GCWGC 4 cut(s) 110, 125, 186, 422
TspDTI ATGAA 3 cut(s) 71, 87, 432
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 2 cut(s) 199, 256
VpaK11BI GGWCC 1 cut(s) 257
XceI RCATGY 1 cut(s) 153
XmaJI CCTAGG 1 cut(s) 214
XmiI GTMKAC 3 cut(s) 88, 264, 282
XspI CTAG 3 cut(s) 204, 215, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.