Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004383

Physical Location & Seq

Genomic Coordinates Forward (+)

60856909 .. 60857852

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGAGTGGAGAAGGAGCAGTTCGGTTTCCTTTGTCTGATTCAAGCACTCTCGTGATACAAATGGGGGATATCACCAAGTGGTTCGTCGACGGCTCCACTGACGCCATTCTACTTCATCTTCTTTATTCGTTGGGAGAAATTTACAGGGAAATCTTGTGTATGTTCGTGTCTTTTTCATTGTTTTGTGTTAGCTTCTGGGCTTGTGATGCTCTCTGCTTTAAGTTATACGTGTATCAGTCTATACATAGGGCTGCTGGCCGGGATCTTCTACAGGCATGCTATGGTGTCCCCGAAGCCAGGCCAGGCGTCCGCTGCCCCACTGGAAAAGCTAGAATTACCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Macro

Protein Analysis

115

Amino Acids

12.75

Weight (kDa)

6.69

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40600
fragaria_vesca	FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700
malus_domestica	MD01G1164200.v1.1
prunus_persica	Prupe.2G262000_v2.0.a1
pyrus_communis	pycom01g17850
rosa_chinensis	RchiOBHm_Chr1g0371901 RchiOBHm_Chr1g0371911 RchiOBHm_Chr1g0371921
rosa_laevigata	RLG00000026936 RLG00000026937
rosa_multiflora	Rmu_co8357249.1_g000001 Rmu_sc0001755.1_g000046
rosa_roxburghii	Rroxscaffold_4G00285380 Rroxscaffold_4G00285390
rosa_rugosa	Rorug01G0367200.1 Rorug01G0367300
rosa_samantha	Rh1AG376900 Rh1AG377000 Rh1BG340200 Rh1BG340300 Rh1CG353200 Rh1CG353400 Rh1DG371200
rosa_wichuraiana	Rw1G033160 Rw1G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	2 cut(s)	105, 309
AdeI	CACNNNGTG	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	2 cut(s)	299, 304
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	195, 332
AluI	AGCT	2 cut(s)	195, 332
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	2 cut(s)	259, 302
ApeKI	GCWGC	2 cut(s)	254, 315
ApoI	RAATTY	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	67
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	241, 302
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	301, 306
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	2 cut(s)	255, 316
BlsI	GCNGC	2 cut(s)	256, 317
Bme1390I	CCNGG	3 cut(s)	263, 301, 306
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	263, 301, 306
BmsI	GCATC	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	105, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	301, 306
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	241, 302
BshFI	GGCC	2 cut(s)	261, 304
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	261, 304
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	261, 304
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	2 cut(s)	105, 309
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	301, 306
BstACI	GRCGYC	2 cut(s)	105, 309
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	259, 280
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 315
BstNI	CCWGG	2 cut(s)	301, 306
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	3 cut(s)	261, 299, 304
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	241, 302
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	261, 304
BtsIMutI	CAGTG	2 cut(s)	99, 321
Cac8I	GCNNGC	2 cut(s)	259, 280
CseI	GACGC	2 cut(s)	113, 298
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	8 cut(s)	96, 195, 203, 254, 261, 299, 304, 332
CviKI_1	RGCY	8 cut(s)	96, 195, 203, 254, 261, 299, 304, 332
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DraIII	CACNNNGTG	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	299, 304
EcoRV	GATATC	1 cut(s)	73
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	164, 229, 245, 249, 280, 285
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	278
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	255, 316
Fsp4HI	GCNGC	2 cut(s)	255, 316
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	2 cut(s)	255, 316
HaeIII	GGCC	2 cut(s)	261, 304
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	2 cut(s)	113, 298
Hin1I	GRCGYC	2 cut(s)	105, 309
Hin1II	CATG	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 315
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	105, 309
Hsp92II	CATG	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	17, 101
Lsp1109I	GCAGC	2 cut(s)	241, 302
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	231
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	113, 260
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	141, 336
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	3 cut(s)	263, 301, 306
MvaI	CCWGG	2 cut(s)	301, 306
MwoI	GCNNNNNNNGC	2 cut(s)	209, 315
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	256, 317
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	299, 304
PspGI	CCWGG	2 cut(s)	299, 304
PspN4I	GGNNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	255, 316
Sau3AI	GATC	1 cut(s)	265
ScrFI	CCNGG	3 cut(s)	263, 301, 306
SetI	ASST	3 cut(s)	197, 234, 334
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	272
SgrDI	CGTCGACG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	2 cut(s)	141, 336
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	261, 299, 304
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	141, 336
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	106, 328
TseI	GCWGC	2 cut(s)	254, 315
TspDTI	ATGAA	2 cut(s)	107, 168
TspRI	CASTG	2 cut(s)	106, 328
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.