Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004383

Physical Location & Seq

Genomic Coordinates Forward (+)

17042653 .. 17044511

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17850.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCCAGTTACCTCTGCAGAGCATCTAGATTTCTCAGCTCAGCTCCCACGATCAGACTCGCATCATCGAACCCTGCAAGATTTCGCTGCTCTGTTAAGCTTTCGACCATGTCTAACGGAGGAGCTGTTCGCTTCCCCTTATCCGCTTCAAGCACTCTCGTAATCCAAAAGGGAGATATCACCAAGTGGTCCGTCGACGGCTCCACGGACGCCATCGTTAATCCAGCAAATGAGCGGATGCTAGGAGGTGGTGGTGCAGATGGAGCTATACATAGGGCTGCTGGCCCAGATCTTCTGCAAGCATGCTATAGTGTCCCAGAAGTCAGGCCCGGTGTTCGCTGTCCCACCGGAGAAGCAAGGATCACCCCGGGTTTTAAGTTGCCTGCATCTCATGTAATTCATACTGTTGGACCCGTGTACCATTCTGGCAGCAACCCGGAAACCTTTCTGAGTGCTGCGTACAGGAATAGCTTGACCTTAGCCAAATCAAACAACCTTCAGTATATCGCGTTTCCTGCTATTTCTTGTGGTGTGTATGGATATCCTTACGATGAAGCAGCTACAGTATCTTTATCCACAATTAAGGAGTTTGTGGATGGCCTAAAGGAGGTGCACTTTGTTCTCTTCGCAGACGATATTTATGATGTTTGGGTGAAAAAGGCCAATCAATTGCTTAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Macro

Protein Analysis

228

Amino Acids

24.27

Weight (kDa)

8.97

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40600
fragaria_vesca	FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700
malus_domestica	MD01G1164200.v1.1
prunus_persica	Prupe.2G262000_v2.0.a1
pyrus_communis	pycom01g17850
rosa_chinensis	RchiOBHm_Chr1g0371901 RchiOBHm_Chr1g0371911 RchiOBHm_Chr1g0371921
rosa_laevigata	RLG00000026936 RLG00000026937
rosa_multiflora	Rmu_co8357249.1_g000001 Rmu_sc0001755.1_g000046
rosa_roxburghii	Rroxscaffold_4G00285380 Rroxscaffold_4G00285390
rosa_rugosa	Rorug01G0367200.1 Rorug01G0367300
rosa_samantha	Rh1AG376900 Rh1AG377000 Rh1BG340200 Rh1BG340300 Rh1CG353200 Rh1CG353400 Rh1DG371200
rosa_wichuraiana	Rw1G033160 Rw1G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	509
AciI	CCGC	2 cut(s)	144, 235
AclWI	GGATC	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	210
AdeI	CACNNNGTG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	419, 461
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	7 cut(s)	39, 44, 100, 125, 266, 471, 560
AluI	AGCT	7 cut(s)	39, 44, 100, 125, 266, 471, 560
Alw21I	GWGCWC	1 cut(s)	615
Alw44I	GTGCAC	1 cut(s)	611
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	4 cut(s)	283, 326, 598, 660
ApaLI	GTGCAC	1 cut(s)	611
ApeKI	GCWGC	5 cut(s)	87, 278, 429, 455, 557
Asp700I	GAANNNNTTC	1 cut(s)	444
AspS9I	GGNCC	4 cut(s)	189, 284, 327, 410
AsuC2I	CCSGG	4 cut(s)	330, 368, 369, 437
AsuHPI	GGTGA	3 cut(s)	172, 355, 664
AvaI	CYCGRG	1 cut(s)	367
AvaII	GGWCC	2 cut(s)	189, 410
BaeGI	GKGCMC	1 cut(s)	615
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	5 cut(s)	74, 265, 441, 442, 569
BccI	CCATC	3 cut(s)	221, 254, 590
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	4 cut(s)	330, 368, 369, 437
BfaI	CTAG	2 cut(s)	27, 242
BfmI	CTRYAG	3 cut(s)	16, 307, 561
BfrI	CTTAAG	1 cut(s)	674
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	5 cut(s)	88, 279, 430, 456, 558
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	5 cut(s)	89, 280, 431, 457, 559
Bme1390I	CCNGG	4 cut(s)	330, 368, 369, 437
Bme18I	GGWCC	2 cut(s)	189, 410
BmeT110I	CYCGRG	1 cut(s)	367
BmgT120I	GGNCC	4 cut(s)	189, 284, 327, 410
BmiI	GGNNCC	2 cut(s)	202, 412
BmrFI	CCNGG	4 cut(s)	330, 368, 369, 437
BmsI	GCATC	4 cut(s)	32, 71, 228, 395
Bpu10I	CCTNAGC	1 cut(s)	478
Bpu1102I	GCTNAGC	1 cut(s)	40
BpuMI	CCSGG	4 cut(s)	330, 368, 369, 437
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	204, 366, 367
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	204, 366, 367
BseGI	GGATG	2 cut(s)	243, 601
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	3 cut(s)	49, 54, 440
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	5 cut(s)	74, 265, 441, 442, 569
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	4 cut(s)	285, 328, 600, 662
BsiHKAI	GWGCWC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	4 cut(s)	330, 348, 368, 437
BslFI	GGGAC	2 cut(s)	299, 327
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	299, 327
BsnI	GGCC	4 cut(s)	285, 328, 600, 662
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	51, 289, 360
Bsp1720I	GCTNAGC	1 cut(s)	40
BspACI	CCGC	2 cut(s)	144, 235
BspANI	GGCC	4 cut(s)	285, 328, 600, 662
BspCNI	CTCAG	3 cut(s)	48, 53, 441
BspFNI	CGCG	1 cut(s)	509
BspLI	GGNNCC	2 cut(s)	202, 412
BspMAI	CTGCAG	1 cut(s)	20
BspPI	GGATC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	204, 366, 367
BssMI	GATC	3 cut(s)	51, 289, 360
BssNI	GRCGYC	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	406, 565
Bst6I	CTCTTC	1 cut(s)	629
BstACI	GRCGYC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	283, 300, 304, 384
BstDEI	CTNAG	4 cut(s)	35, 40, 449, 478
BstDSI	CCRYGG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	243, 601
BstFNI	CGCG	1 cut(s)	509
BstKTI	GATC	3 cut(s)	54, 292, 363
BstMBI	GATC	3 cut(s)	51, 289, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 515
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	4 cut(s)	328, 366, 367, 435
BstSFI	CTRYAG	3 cut(s)	16, 307, 561
BstSLI	GKGCMC	1 cut(s)	615
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	5 cut(s)	74, 265, 441, 442, 569
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	285, 328, 600, 662
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	243, 601
Cac8I	GCNNGC	4 cut(s)	283, 300, 304, 384
Cfr13I	GGNCC	4 cut(s)	189, 284, 327, 410
Cfr9I	CCCGGG	1 cut(s)	367
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	418, 460
CviAII	CATG	3 cut(s)	109, 303, 392
CviQI	GTAC	2 cut(s)	418, 460
DdeI	CTNAG	4 cut(s)	35, 40, 449, 478
DpnI	GATC	3 cut(s)	53, 291, 362
DpnII	GATC	3 cut(s)	51, 289, 360
DraIII	CACNNNGTG	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco32I	GATATC	2 cut(s)	178, 542
Eco47I	GGWCC	2 cut(s)	189, 410
Eco57I	CTGAAG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoRV	GATATC	2 cut(s)	178, 542
FaeI	CATG	3 cut(s)	112, 306, 395
FaqI	GGGAC	2 cut(s)	299, 327
FatI	CATG	3 cut(s)	108, 302, 391
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	88, 279, 430, 456, 558
FokI	GGATG	2 cut(s)	250, 608
Fsp4HI	GCNGC	5 cut(s)	88, 279, 430, 456, 558
FspBI	CTAG	2 cut(s)	27, 242
GluI	GCNGC	5 cut(s)	88, 279, 430, 456, 558
HaeIII	GGCC	4 cut(s)	285, 328, 600, 662
HapII	CCGG	4 cut(s)	330, 348, 368, 437
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	112, 306, 395
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	4 cut(s)	330, 348, 368, 437
HphI	GGTGA	3 cut(s)	172, 355, 664
Hpy166II	GTNNAC	3 cut(s)	196, 418, 613
Hpy188I	TCNGA	2 cut(s)	56, 450
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	3 cut(s)	196, 418, 613
Hpy99I	CGWCG	2 cut(s)	197, 200
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	406, 565
HpyCH4V	TGCA	6 cut(s)	18, 77, 257, 298, 386, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 515
HpyF3I	CTNAG	4 cut(s)	35, 40, 449, 478
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	112, 306, 395
Kzo9I	GATC	3 cut(s)	51, 289, 360
LmnI	GCTCC	4 cut(s)	49, 122, 206, 263
Lsp1109I	GCAGC	5 cut(s)	74, 265, 441, 442, 569
LweI	GCATC	4 cut(s)	32, 71, 228, 395
MaeI	CTAG	2 cut(s)	27, 242
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	53, 291, 362
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	3 cut(s)	51, 289, 360
MboII	GAAGA	2 cut(s)	284, 616
MfeI	CAATTG	1 cut(s)	668
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	615
MluCI	AATT	3 cut(s)	396, 579, 668
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	4 cut(s)	23, 113, 239, 601
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	6 cut(s)	96, 219, 375, 582, 675, 682
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	4 cut(s)	330, 348, 368, 437
MspR9I	CCNGG	4 cut(s)	330, 368, 369, 437
MunI	CAATTG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	263, 515
NciI	CCSGG	4 cut(s)	330, 368, 369, 437
NdeII	GATC	3 cut(s)	51, 289, 360
NlaIII	CATG	3 cut(s)	112, 306, 395
NlaIV	GGNNCC	2 cut(s)	202, 412
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	444
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	89, 280, 431, 457, 559
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	202, 412
PspPI	GGNCC	4 cut(s)	189, 284, 327, 410
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	109
RsaI	GTAC	2 cut(s)	419, 461
RsaNI	GTAC	2 cut(s)	418, 460
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	6 cut(s)	96, 219, 375, 582, 675, 682
SatI	GCNGC	5 cut(s)	88, 279, 430, 456, 558
Sau3AI	GATC	3 cut(s)	51, 289, 360
Sau96I	GGNCC	4 cut(s)	189, 284, 327, 410
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	4 cut(s)	330, 368, 369, 437
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	4 cut(s)	32, 71, 228, 395
SfcI	CTRYAG	3 cut(s)	16, 307, 561
SgrDI	CGTCGACG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	189, 410
SmaI	CCCGGG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	3 cut(s)	396, 579, 668
SsiI	CCGC	2 cut(s)	144, 235
SspMI	CTAG	2 cut(s)	27, 242
StyD4I	CCNGG	4 cut(s)	328, 366, 367, 435
TaaI	ACNGT	2 cut(s)	406, 565
TaqI	TCGA	3 cut(s)	68, 104, 195
TasI	AATT	3 cut(s)	396, 579, 668
Tru1I	TTAA	6 cut(s)	96, 219, 375, 582, 675, 682
Tru9I	TTAA	6 cut(s)	96, 219, 375, 582, 675, 682
TseI	GCWGC	5 cut(s)	87, 278, 429, 455, 557
TspDTI	ATGAA	2 cut(s)	389, 567
TspGWI	ACGGA	3 cut(s)	132, 181, 221
TspMI	CCCGGG	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	674
VneI	GTGCAC	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	189, 410
XagI	CCTNNNNNAGG	1 cut(s)	605
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	306
XmaI	CCCGGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	27, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.