Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357249.1

Orthogroup ID

OG0004383

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1045

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

atgggggatatcaccaagtggttcgtcgacggctccactgacgccattgttaatccagcgaatgagcgaatgcttggaggtggtggtgcagatggagctatacatagggctgctggcccggatcttctacaagcatgctatggtgttccggaagccaggccaggagtccgctgccccactggagaagcgagaattaccccagggtttaagttgcctgcgtctcatgtaattcacactgttggacctgtctaccatgctggtaacaaccctgaagtctatctgagttctgcatacaggaatagcttgagcatagccaaagcgcacaacattcagtatgttgcatttcctgccatatcttgtggtgtgtatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Macro

Protein Analysis

124

Amino Acids

12.95

Weight (kDa)

6.95

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40600
fragaria_vesca	FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700
malus_domestica	MD01G1164200.v1.1
prunus_persica	Prupe.2G262000_v2.0.a1
pyrus_communis	pycom01g17850
rosa_chinensis	RchiOBHm_Chr1g0371901 RchiOBHm_Chr1g0371911 RchiOBHm_Chr1g0371921
rosa_laevigata	RLG00000026936 RLG00000026937
rosa_multiflora	Rmu_co8357249.1_g000001 Rmu_sc0001755.1_g000046
rosa_roxburghii	Rroxscaffold_4G00285380 Rroxscaffold_4G00285390
rosa_rugosa	Rorug01G0367200.1 Rorug01G0367300
rosa_samantha	Rh1AG376900 Rh1AG377000 Rh1BG340200 Rh1BG340300 Rh1CG353200 Rh1CG353400 Rh1DG371200
rosa_wichuraiana	Rw1G033160 Rw1G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	27, 249
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	18
AjnI	CCWGG	3 cut(s)	155, 160, 199
AluBI	AGCT	2 cut(s)	98, 303
AluI	AGCT	2 cut(s)	98, 303
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	2 cut(s)	115, 158
ApeKI	GCWGC	2 cut(s)	110, 171
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	116, 242
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	97, 158
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	3 cut(s)	157, 162, 201
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	111, 172
BlsI	GCNGC	2 cut(s)	112, 173
Bme1390I	CCNGG	4 cut(s)	119, 157, 162, 201
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	116, 242
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	4 cut(s)	119, 157, 162, 201
BpmI	CTGGAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	199, 200
BsaWI	WCCGGW	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	157, 162, 201
BseDI	CCNNGG	2 cut(s)	199, 200
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	97, 158
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	117, 160
BsiSI	CCGG	2 cut(s)	119, 149
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	117, 160
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	117, 160
BspCNI	CTCAG	1 cut(s)	273
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	199, 200
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	3 cut(s)	157, 162, 201
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	115, 136, 216
BstDEI	CTNAG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 347
BstNI	CCWGG	3 cut(s)	157, 162, 201
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	4 cut(s)	117, 155, 160, 199
BstV1I	GCAGC	2 cut(s)	97, 158
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	117, 160
BtsIMutI	CAGTG	3 cut(s)	36, 177, 234
Cac8I	GCNNGC	3 cut(s)	115, 136, 216
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	116, 242
CseI	GACGC	2 cut(s)	50, 207
CviAII	CATG	3 cut(s)	135, 224, 254
CviJI	RGCY	8 cut(s)	33, 98, 110, 117, 155, 160, 303, 314
CviKI_1	RGCY	8 cut(s)	33, 98, 110, 117, 155, 160, 303, 314
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraIII	CACNNNGTG	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	155, 160, 199
EcoRV	GATATC	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	3 cut(s)	138, 227, 257
FatI	CATG	3 cut(s)	134, 223, 253
FblI	GTMKAC	2 cut(s)	27, 249
Fnu4HI	GCNGC	2 cut(s)	111, 172
Fsp4HI	GCNGC	2 cut(s)	111, 172
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	2 cut(s)	111, 172
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	117, 160
HapII	CCGG	2 cut(s)	119, 149
HgaI	GACGC	2 cut(s)	50, 207
HhaI	GCGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	138, 227, 257
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	2 cut(s)	119, 149
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	28, 250
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	28, 250
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	89, 290, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 347
HpyF3I	CTNAG	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	138, 227, 257
HspAI	GCGC	1 cut(s)	320
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	38, 95
Lsp1109I	GCAGC	2 cut(s)	97, 158
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	192, 228
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	71
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	2 cut(s)	51, 207
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	2 cut(s)	119, 149
MspR9I	CCNGG	4 cut(s)	119, 157, 162, 201
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	3 cut(s)	157, 162, 201
MwoI	GCNNNNNNNGC	2 cut(s)	95, 347
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	138, 227, 257
NlaIV	GGNNCC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PasI	CCCWGGG	1 cut(s)	200
PctI	GAATGC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	112, 173
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	155, 160, 199
PspGI	CCWGG	3 cut(s)	155, 160, 199
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	116, 242
PsuI	RGATCY	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	51, 207
SatI	GCNGC	2 cut(s)	111, 172
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	116, 242
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	4 cut(s)	119, 157, 162, 201
SetI	ASST	4 cut(s)	82, 100, 247, 305
SgrDI	CGTCGACG	1 cut(s)	26
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	2 cut(s)	192, 228
SsiI	CCGC	1 cut(s)	169
StyD4I	CCNGG	4 cut(s)	117, 155, 160, 199
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	192, 228
Tru1I	TTAA	2 cut(s)	51, 207
Tru9I	TTAA	2 cut(s)	51, 207
TscAI	CASTG	3 cut(s)	43, 184, 241
TseI	GCWGC	2 cut(s)	110, 171
TspRI	CASTG	3 cut(s)	43, 184, 241
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	1 cut(s)	138
XmiI	GTMKAC	2 cut(s)	27, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.