Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0004383

Physical Location & Seq

Genomic Coordinates Reverse (-)

204682 .. 208746

Gene Structure 4065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001755.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgcttggaggtggtggtggagatggcgctatacatagggctgctggcccggatcttctacaggcatgctatggtgtccccgaagccaggccaggcgtccgctgccccactggagaagctagaattaccctagggtttaagttgcctgcgtctcatgtaattcacactgttggacctgtctaccgtcctggtagcgtctaccctcctgctaacaaccctgaagtttatctgagctctgcgtataggaatagcttgagcatagccaaagcacacaacattcagtatgttgcgtttcctcccatatcttgtggttcgtatggatatccttatgatgaagctgccgaagtgtctctgtccacaatcaaggaatccgtgaatgacataaaggaggcaatggcgagcttgctgtgtaaagcatcaagatttctgagcccagctccggcgatcaattcaagccgtggaaaagttgggagctttgttagggttagagctagggtttcgacgatggcgagtggagaaggagcagttcggtttcctttgtctgattcaagcactctcgtgatacaaatgggggatatcaccaagtggttcgtcgacggctccactgacgccattgttaatccagcgaatgagcgaatgcttggaggtggtggtgcagatggagctatacatagggctgctggcccggatcttctacaagcatgctatggtgttccggaagccaggccaggagtccgctgccccactggagaagcgagaattaccccagggtttaagttgcctgcgtctcatgtaattcacactgttggacctgtctaccatgctggtaacaaccctgaagtctatctgagttctgcatacaggaatagcttgagcatagccaaagcgcacaacattcagtatgttgcatttcctgccatatcttgtggtgtgtatggatatccttatgatgaagctgccgaagtgtccctatccacaattaaagaatccgtgaatgacataaaggaggtgcactttgttcttttctcggaagatatttacaatgtctggttggacaaggcaaagaaattgcttaaagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Macro Pollen_allerg_1 Ribosomal_S26e

Protein Analysis

360

Amino Acids

38.18

Weight (kDa)

8.09

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40600
fragaria_vesca	FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700 FvH4_7g25700
malus_domestica	MD01G1164200.v1.1
prunus_persica	Prupe.2G262000_v2.0.a1
pyrus_communis	pycom01g17850
rosa_chinensis	RchiOBHm_Chr1g0371901 RchiOBHm_Chr1g0371911 RchiOBHm_Chr1g0371921
rosa_laevigata	RLG00000026936 RLG00000026937
rosa_multiflora	Rmu_co8357249.1_g000001 Rmu_sc0001755.1_g000046
rosa_roxburghii	Rroxscaffold_4G00285380 Rroxscaffold_4G00285390
rosa_rugosa	Rorug01G0367200.1 Rorug01G0367300
rosa_samantha	Rh1AG376900 Rh1AG377000 Rh1BG340200 Rh1BG340300 Rh1CG353200 Rh1CG353400 Rh1DG371200
rosa_wichuraiana	Rw1G033160 Rw1G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	180, 198, 594, 816
AccIII	TCCGGA	1 cut(s)	715
AciI	CCGC	2 cut(s)	100, 736
AclWI	GGATC	2 cut(s)	60, 696
AcuI	CTGAAG	2 cut(s)	240, 858
AcyI	GRCGYC	2 cut(s)	96, 609
AdeI	CACNNNGTG	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	87, 439
AgsI	TTSAA	2 cut(s)	453, 549
AjnI	CCWGG	6 cut(s)	86, 91, 187, 722, 727, 766
AleI	CACNNNNGTG	1 cut(s)	557
Alw21I	GWGCWC	2 cut(s)	236, 1014
Alw26I	GTCTC	3 cut(s)	156, 354, 792
Alw44I	GTGCAC	1 cut(s)	1010
AlwI	GGATC	2 cut(s)	60, 696
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	4 cut(s)	46, 89, 682, 725
ApaLI	GTGCAC	1 cut(s)	1010
ApeKI	GCWGC	6 cut(s)	41, 102, 338, 677, 738, 956
AspA2I	CCTAGG	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	29, 889
AspS9I	GGNCC	4 cut(s)	47, 173, 683, 809
AsuC2I	CCSGG	2 cut(s)	50, 686
AsuHPI	GGTGA	1 cut(s)	571
AvaII	GGWCC	2 cut(s)	173, 809
AvrII	CCTAGG	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	1014
BanII	GRGCYC	2 cut(s)	236, 434
BauI	CACGAG	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	236, 1014
BbvI	GCAGC	6 cut(s)	28, 89, 325, 664, 725, 943
BccI	CCATC	3 cut(s)	17, 499, 653
BceAI	ACGGC	2 cut(s)	441, 613
BciT130I	CCWGG	6 cut(s)	88, 93, 189, 724, 729, 768
BcnI	CCSGG	2 cut(s)	50, 686
BcoDI	GTCTC	3 cut(s)	156, 354, 792
BfaI	CTAG	3 cut(s)	120, 131, 492
BfmI	CTRYAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	6 cut(s)	42, 103, 339, 678, 739, 957
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	6 cut(s)	43, 104, 340, 679, 740, 958
Bme1390I	CCNGG	8 cut(s)	50, 88, 93, 189, 686, 724, 729, 768
Bme18I	GGWCC	2 cut(s)	173, 809
BmgT120I	GGNCC	4 cut(s)	47, 173, 683, 809
BmiI	GGNNCC	1 cut(s)	601
BmrFI	CCNGG	8 cut(s)	50, 88, 93, 189, 686, 724, 729, 768
BmsI	GCATC	1 cut(s)	425
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	2 cut(s)	132, 768
BpuEI	CTTGAG	2 cut(s)	274, 892
BpuMI	CCSGG	2 cut(s)	50, 686
BsaHI	GRCGYC	2 cut(s)	96, 609
BsaJI	CCNNGG	4 cut(s)	130, 457, 766, 767
BsaWI	WCCGGW	1 cut(s)	715
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 439
Bse1I	ACTGG	2 cut(s)	115, 751
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	715
BseBI	CCWGG	6 cut(s)	88, 93, 189, 724, 729, 768
BseDI	CCNNGG	4 cut(s)	130, 457, 766, 767
BseLI	CCNNNNNNNGG	2 cut(s)	87, 439
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	3 cut(s)	221, 419, 839
BseNI	ACTGG	2 cut(s)	115, 751
BseSI	GKGCMC	1 cut(s)	1014
BseXI	GCAGC	6 cut(s)	28, 89, 325, 664, 725, 943
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	675
BshFI	GGCC	4 cut(s)	48, 91, 684, 727
BsiHKAI	GWGCWC	2 cut(s)	236, 1014
BsiSI	CCGG	4 cut(s)	50, 440, 686, 716
BslFI	GGGAC	2 cut(s)	62, 952
BslI	CCNNNNNNNGG	2 cut(s)	87, 439
BsmAI	GTCTC	3 cut(s)	156, 354, 792
BsmBI	CGTCTC	2 cut(s)	156, 792
BsmFI	GGGAC	2 cut(s)	62, 952
BsmI	GAATGC	1 cut(s)	642
BsnI	GGCC	4 cut(s)	48, 91, 684, 727
Bsp1286I	GDGCHC	3 cut(s)	236, 434, 1014
Bsp13I	TCCGGA	1 cut(s)	715
Bsp143I	GATC	3 cut(s)	52, 444, 688
BspACI	CCGC	2 cut(s)	100, 736
BspANI	GGCC	4 cut(s)	48, 91, 684, 727
BspCNI	CTCAG	3 cut(s)	222, 420, 840
BspEI	TCCGGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	601
BspPI	GGATC	2 cut(s)	60, 696
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	115, 751
BssECI	CCNNGG	4 cut(s)	130, 457, 766, 767
BssMI	GATC	3 cut(s)	52, 444, 688
BssNI	GRCGYC	2 cut(s)	96, 609
BssSI	CACGAG	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	557
Bst2UI	CCWGG	6 cut(s)	88, 93, 189, 724, 729, 768
Bst4CI	ACNGT	3 cut(s)	169, 185, 805
BstACI	GRCGYC	2 cut(s)	96, 609
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	8 cut(s)	46, 67, 147, 400, 404, 682, 703, 783
BstDEI	CTNAG	3 cut(s)	230, 428, 848
BstDSI	CCRYGG	1 cut(s)	457
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	29, 889
BstKTI	GATC	3 cut(s)	55, 447, 691
BstMAI	GTCTC	3 cut(s)	156, 354, 792
BstMBI	GATC	3 cut(s)	52, 444, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 662, 914
BstNI	CCWGG	6 cut(s)	88, 93, 189, 724, 729, 768
BstNSI	RCATGY	2 cut(s)	69, 705
BstSCI	CCNGG	8 cut(s)	48, 86, 91, 187, 684, 722, 727, 766
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	1014
BstV1I	GCAGC	6 cut(s)	28, 89, 325, 664, 725, 943
BstX2I	RGATCY	2 cut(s)	52, 688
BstYI	RGATCY	2 cut(s)	52, 688
BsuRI	GGCC	4 cut(s)	48, 91, 684, 727
BtgI	CCRYGG	1 cut(s)	457
BtsIMutI	CAGTG	5 cut(s)	108, 165, 603, 744, 801
Cac8I	GCNNGC	8 cut(s)	46, 67, 147, 400, 404, 682, 703, 783
CfoI	GCGC	2 cut(s)	29, 889
Cfr13I	GGNCC	4 cut(s)	47, 173, 683, 809
CseI	GACGC	5 cut(s)	85, 138, 184, 617, 774
CviAII	CATG	5 cut(s)	66, 155, 702, 791, 821
DdeI	CTNAG	3 cut(s)	230, 428, 848
DpnI	GATC	3 cut(s)	54, 446, 690
DpnII	GATC	3 cut(s)	52, 444, 688
DraIII	CACNNNGTG	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	236, 434
Eco32I	GATATC	3 cut(s)	323, 577, 941
Eco47I	GGWCC	2 cut(s)	173, 809
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	240, 858
EcoICRI	GAGCTC	1 cut(s)	234
EcoRII	CCWGG	6 cut(s)	86, 91, 187, 722, 727, 766
EcoRV	GATATC	3 cut(s)	323, 577, 941
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	2 cut(s)	236, 434
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	2 cut(s)	156, 792
FaeI	CATG	5 cut(s)	69, 158, 705, 794, 824
FaqI	GGGAC	2 cut(s)	62, 952
FatI	CATG	5 cut(s)	65, 154, 701, 790, 820
FblI	GTMKAC	4 cut(s)	180, 198, 594, 816
Fnu4HI	GCNGC	6 cut(s)	42, 103, 339, 678, 739, 957
FriOI	GRGCYC	2 cut(s)	236, 434
Fsp4HI	GCNGC	6 cut(s)	42, 103, 339, 678, 739, 957
FspBI	CTAG	3 cut(s)	120, 131, 492
GlaI	GCGC	2 cut(s)	28, 888
GluI	GCNGC	6 cut(s)	42, 103, 339, 678, 739, 957
GsaI	CCCAGC	1 cut(s)	437
GsuI	CTGGAG	2 cut(s)	132, 768
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	4 cut(s)	48, 91, 684, 727
HapII	CCGG	4 cut(s)	50, 440, 686, 716
HgaI	GACGC	5 cut(s)	85, 138, 184, 617, 774
HhaI	GCGC	2 cut(s)	29, 889
Hin1I	GRCGYC	2 cut(s)	96, 609
Hin1II	CATG	5 cut(s)	69, 158, 705, 794, 824
Hin6I	GCGC	2 cut(s)	27, 887
HinP1I	GCGC	2 cut(s)	27, 887
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	4 cut(s)	368, 545, 732, 986
HpaII	CCGG	4 cut(s)	50, 440, 686, 716
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	6 cut(s)	181, 199, 357, 595, 817, 1012
Hpy188I	TCNGA	5 cut(s)	231, 429, 544, 849, 1030
Hpy188III	TCNNGA	3 cut(s)	420, 559, 716
Hpy8I	GTNNAC	6 cut(s)	181, 199, 357, 595, 817, 1012
Hpy99I	CGWCG	3 cut(s)	505, 596, 599
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	3 cut(s)	169, 185, 805
HpyCH4V	TGCA	4 cut(s)	656, 857, 908, 1012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 662, 914
HpyF3I	CTNAG	3 cut(s)	230, 428, 848
Hsp92I	GRCGYC	2 cut(s)	96, 609
Hsp92II	CATG	5 cut(s)	69, 158, 705, 794, 824
HspAI	GCGC	2 cut(s)	27, 887
Kpn2I	TCCGGA	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	52, 444, 688
LmnI	GCTCC	5 cut(s)	442, 471, 521, 605, 662
Lsp1109I	GCAGC	6 cut(s)	28, 89, 325, 664, 725, 943
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	120, 131, 492
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	3 cut(s)	54, 446, 690
MboI	GATC	3 cut(s)	52, 444, 688
MboII	GAAGA	3 cut(s)	47, 683, 1043
MflI	RGATCY	2 cut(s)	52, 688
MhlI	GDGCHC	3 cut(s)	236, 434, 1014
MluCI	AATT	7 cut(s)	123, 159, 448, 759, 795, 978, 1067
MlyI	GAGTC	1 cut(s)	741
MmeI	TCCRAC	3 cut(s)	151, 787, 1032
MnlI	CCTC	5 cut(s)	213, 306, 382, 638, 1000
MroI	TCCGGA	1 cut(s)	715
MseI	TTAA	5 cut(s)	138, 618, 774, 981, 1074
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	2 cut(s)	102, 738
MspI	CCGG	4 cut(s)	50, 440, 686, 716
MspR9I	CCNGG	8 cut(s)	50, 88, 93, 189, 686, 724, 729, 768
Mva1269I	GAATGC	1 cut(s)	642
MvaI	CCWGG	6 cut(s)	88, 93, 189, 724, 729, 768
MwoI	GCNNNNNNNGC	3 cut(s)	102, 662, 914
NciI	CCSGG	2 cut(s)	50, 686
NdeII	GATC	3 cut(s)	52, 444, 688
NlaIII	CATG	5 cut(s)	69, 158, 705, 794, 824
NlaIV	GGNNCC	1 cut(s)	601
NspI	RCATGY	2 cut(s)	69, 705
OliI	CACNNNNGTG	1 cut(s)	557
PaeI	GCATGC	2 cut(s)	69, 705
PasI	CCCWGGG	1 cut(s)	767
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PctI	GAATGC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	368, 545, 986
PkrI	GCNGC	6 cut(s)	43, 104, 340, 679, 740, 958
PleI	GAGTC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	740
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	6 cut(s)	86, 91, 187, 722, 727, 766
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	6 cut(s)	86, 91, 187, 722, 727, 766
PspN4I	GGNNCC	1 cut(s)	601
PspPI	GGNCC	4 cut(s)	47, 173, 683, 809
PsuI	RGATCY	2 cut(s)	52, 688
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	593
SaqAI	TTAA	5 cut(s)	138, 618, 774, 981, 1074
SatI	GCNGC	6 cut(s)	42, 103, 339, 678, 739, 957
Sau3AI	GATC	3 cut(s)	52, 444, 688
Sau96I	GGNCC	4 cut(s)	47, 173, 683, 809
SchI	GAGTC	1 cut(s)	741
ScrFI	CCNGG	8 cut(s)	50, 88, 93, 189, 686, 724, 729, 768
SduI	GDGCHC	3 cut(s)	236, 434, 1014
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	59
SgrDI	CGTCGACG	1 cut(s)	593
SinI	GGWCC	2 cut(s)	173, 809
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	253, 871
SmoI	CTYRAG	2 cut(s)	253, 871
SphI	GCATGC	2 cut(s)	69, 705
Sse9I	AATT	7 cut(s)	123, 159, 448, 759, 795, 978, 1067
SsiI	CCGC	2 cut(s)	100, 736
SspMI	CTAG	3 cut(s)	120, 131, 492
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	8 cut(s)	48, 86, 91, 187, 684, 722, 727, 766
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	3 cut(s)	169, 185, 805
TaqI	TCGA	2 cut(s)	500, 594
TasI	AATT	7 cut(s)	123, 159, 448, 759, 795, 978, 1067
TfiI	GAWTC	3 cut(s)	368, 545, 986
Tru1I	TTAA	5 cut(s)	138, 618, 774, 981, 1074
Tru9I	TTAA	5 cut(s)	138, 618, 774, 981, 1074
TscAI	CASTG	5 cut(s)	115, 172, 610, 751, 808
TseI	GCWGC	6 cut(s)	41, 102, 338, 677, 738, 956
TspDTI	ATGAA	2 cut(s)	348, 966
TspGWI	ACGGA	2 cut(s)	361, 979
TspRI	CASTG	5 cut(s)	115, 172, 610, 751, 808
VneI	GTGCAC	1 cut(s)	1010
VpaK11BI	GGWCC	2 cut(s)	173, 809
XceI	RCATGY	2 cut(s)	69, 705
XmaJI	CCTAGG	1 cut(s)	130
XmiI	GTMKAC	4 cut(s)	180, 198, 594, 816
XspI	CTAG	3 cut(s)	120, 131, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.