AT2G41670

50S ribosome-binding GTPase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
17373997 .. 17376238
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41670.1

Sequence Viewer

Length: 1161 bp
ATGGTGATGATGTTGAAGAAGACAGTGAAGAAAGGTTTAATCGGCGGAATGAGCTTCGCTAAAGACGCCGGAAAAATCAATTGGTTTCCCGGTCATATGGCTGCAGCTACTCGCGCCATTCGTAACCGCCTCAAGCTCTCCGATCTCGTTATCGAAGTTCGCGATGCTCGTATTCCTCTGTCATCGGCGAACGAAGATCTACAATCCCAAATGTCAGCTAAGAGACGTATCATTGCTCTGAATAAGAAAGATTTAGCAAACCCTAATGTTCTCAATAAATGGACTCGTCATTTCGAATCCAGCAAGCAAGATTGTATTGCCATTAATGCTCATAGCAGAAGCTCTGTCATGAAGCTGCTTGATCTCGTGGAGTTGAAGCTCAAAGAAGTGATTGCTAGGGAGCCTACTTTACTTGTAATGGTGGTTGGTGTCCCCAATGTTGGAAAATCTGCGCTCATTAACTCGATCCATCAAATTGCAGCAGCTCGTTTTCCGGTGCAGGAGAGATTAAAGAGAGCTACGGTTGGTCCATTGCCTGGTGTAACACAAGATATTGCTGGTTTCAAGATTGCTCATCGACCTAGTATATATGTTCTAGACTCCCCTGGTGTGTTGGTTCCAAGTATCCCTGATATCGAAACCGGTTTGAAGCTTGCTCTTTCAGGGTCCGTTAAAGATTCAGTAGTGGGTGAAGAGCGGATTGCACAATACTTTCTAGCTATTCTAAACATTCGAGGGACTCCTCTTCATTGGAAGTACTTAGTTGAGGGAATAAACGAAGGGCCTCATGCAGACTGCATCGATAAGCCAAGCTATAACTTAAAGGATCTTCGACACCAGAGAACCAAACAACCAGATTCATCTGCTCTGCACTATGTCGGGGATATGATTTCAGAAGTGCAACGATCACTGTATATAACACTCTCAGAATTTGATGGGGACACGGAGGATGAGAATGATTTAGAATGTTTGATAGAGCAACAGTTTGAAGTTCTACAAAAGGCATTGAAGATTCCTCACAAAGCATCCGAAGCAAGGTTAATGGTCTCCAAGAAATTTCTTACTTTGTTTAGGACAGGTAGACTTGGTCCCTTTATCCTTGACGATGTCCCTGAAACTGAAACTGACCACCCCAATTCAAAACGGGTAGTTGTTTTGTAA

Protein Analysis

386

Amino Acids

42.98

Weight (kDa)

9.22

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 139 - 209 1.7e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 697
AccI GTMKAC 1 cut(s) 1081
AccII CGCG 2 cut(s) 114, 162
AciI CCGC 3 cut(s) 45, 127, 697
AclWI GGATC 2 cut(s) 460, 834
AcsI RAATTY 2 cut(s) 929, 1055
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 3 cut(s) 440, 536, 1035
AgeI ACCGGT 1 cut(s) 641
AgsI TTSAA 7 cut(s) 16, 376, 565, 649, 989, 1009, 1140
AjnI CCWGG 2 cut(s) 535, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
Alw26I GTCTC 2 cut(s) 217, 1051
AlwI GGATC 2 cut(s) 460, 834
AoxI GGCC 1 cut(s) 782
ApeKI GCWGC 5 cut(s) 101, 104, 355, 479, 482
ApoI RAATTY 2 cut(s) 929, 1055
AseI ATTAAT 1 cut(s) 324
AsiGI ACCGGT 1 cut(s) 641
AspLEI GCGC 2 cut(s) 116, 454
AspS9I GGNCC 4 cut(s) 527, 666, 782, 1088
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 16, 701
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 3 cut(s) 527, 666, 1088
BauI CACGAG 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 5 cut(s) 88, 116, 342, 491, 494
BccI CCATC 2 cut(s) 477, 929
BciT130I CCWGG 2 cut(s) 537, 606
BciVI GTATCC 1 cut(s) 635
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 217, 1051
BfaI CTAG 4 cut(s) 396, 582, 596, 716
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 635
BglII AGATCT 1 cut(s) 196
BisI GCNGC 5 cut(s) 102, 105, 356, 480, 483
BlsI GCNGC 5 cut(s) 103, 106, 357, 481, 484
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 3 cut(s) 90, 537, 606
Bme18I GGWCC 3 cut(s) 527, 666, 1088
BmgT120I GGNCC 4 cut(s) 527, 666, 782, 1088
BmiI GGNNCC 4 cut(s) 402, 618, 667, 1090
BmrFI CCNGG 3 cut(s) 90, 537, 606
BmsI GCATC 3 cut(s) 154, 807, 1034
BpiI GAAGAC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 1051
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 2 cut(s) 493, 641
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 536, 1035
Bse118I RCCGGY 1 cut(s) 641
Bse3DI GCAATG 2 cut(s) 231, 530
BseBI CCWGG 2 cut(s) 537, 606
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 2 cut(s) 955, 1025
BseLI CCNNNNNNNGG 3 cut(s) 440, 536, 1035
BseMI GCAATG 2 cut(s) 231, 530
BseMII CTCAG 1 cut(s) 939
BseRI GAGGAG 1 cut(s) 732
BseXI GCAGC 5 cut(s) 88, 116, 342, 491, 494
BsgI GTGCAG 2 cut(s) 518, 854
Bsh1236I CGCG 2 cut(s) 114, 162
BshFI GGCC 1 cut(s) 784
BshTI ACCGGT 1 cut(s) 641
BshVI ATCGAT 1 cut(s) 801
BsiSI CCGG 4 cut(s) 69, 90, 494, 642
BslFI GGGAC 5 cut(s) 416, 751, 953, 1074, 1094
BslI CCNNNNNNNGG 3 cut(s) 440, 536, 1035
BsmAI GTCTC 2 cut(s) 217, 1051
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 5 cut(s) 416, 751, 953, 1074, 1094
BsnI GGCC 1 cut(s) 784
Bso31I GGTCTC 1 cut(s) 1051
Bsp119I TTCGAA 1 cut(s) 294
Bsp143I GATC 6 cut(s) 142, 196, 361, 465, 826, 905
Bsp68I TCGCGA 1 cut(s) 162
BspACI CCGC 3 cut(s) 45, 127, 697
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 1 cut(s) 938
BspDI ATCGAT 1 cut(s) 801
BspFNI CGCG 2 cut(s) 114, 162
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 4 cut(s) 402, 618, 667, 1090
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 2 cut(s) 460, 834
BspQI GCTCTTC 1 cut(s) 687
BspT104I TTCGAA 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 1051
BsrBI CCGCTC 1 cut(s) 697
BsrDI GCAATG 2 cut(s) 231, 530
BsrFI RCCGGY 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 6 cut(s) 142, 196, 361, 465, 826, 905
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 365
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 2 cut(s) 537, 606
Bst4CI ACNGT 4 cut(s) 25, 523, 912, 984
Bst6I CTCTTC 2 cut(s) 687, 750
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 305, 654
BstDEI CTNAG 3 cut(s) 219, 760, 925
BstF5I GGATG 2 cut(s) 955, 1025
BstFNI CGCG 2 cut(s) 114, 162
BstHHI GCGC 2 cut(s) 116, 454
BstKTI GATC 6 cut(s) 145, 199, 364, 468, 829, 908
BstMAI GTCTC 2 cut(s) 217, 1051
BstMBI GATC 6 cut(s) 142, 196, 361, 465, 826, 905
BstMWI GCNNNNNNNGC 5 cut(s) 51, 65, 113, 326, 1031
BstNI CCWGG 2 cut(s) 537, 606
BstSCI CCNGG 3 cut(s) 88, 535, 604
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 2 cut(s) 114, 162
BstV1I GCAGC 5 cut(s) 88, 116, 342, 491, 494
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 196, 826
BstYI RGATCY 2 cut(s) 196, 826
Bsu15I ATCGAT 1 cut(s) 801
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 1 cut(s) 784
BsuTUI ATCGAT 1 cut(s) 801
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 955, 1025
BtsIMutI CAGTG 2 cut(s) 30, 908
BtuMI TCGCGA 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 305, 654
CciI TCATGA 1 cut(s) 348
CfoI GCGC 2 cut(s) 116, 454
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 4 cut(s) 527, 666, 782, 1088
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 757
CspAI ACCGGT 1 cut(s) 641
CviAII CATG 2 cut(s) 349, 788
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 3 cut(s) 219, 760, 925
DpnI GATC 6 cut(s) 144, 198, 363, 467, 828, 907
DpnII GATC 6 cut(s) 142, 196, 361, 465, 826, 905
Eam1104I CTCTTC 2 cut(s) 687, 750
EarI CTCTTC 2 cut(s) 687, 750
EciI GGCGGA 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 1051
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 3 cut(s) 527, 666, 1088
EcoO109I RGGNCCY 1 cut(s) 782
EcoRII CCWGG 2 cut(s) 535, 604
EcoRV GATATC 1 cut(s) 634
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 2 cut(s) 352, 791
FaqI GGGAC 5 cut(s) 416, 751, 953, 1074, 1094
FatI CATG 2 cut(s) 348, 787
FauNDI CATATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 1081
Fnu4HI GCNGC 5 cut(s) 102, 105, 356, 480, 483
FokI GGATG 2 cut(s) 962, 1012
Fsp4HI GCNGC 5 cut(s) 102, 105, 356, 480, 483
FspBI CTAG 4 cut(s) 396, 582, 596, 716
GlaI GCGC 2 cut(s) 115, 453
GluI GCNGC 5 cut(s) 102, 105, 356, 480, 483
HaeIII GGCC 1 cut(s) 784
HapII CCGG 4 cut(s) 69, 90, 494, 642
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 116, 454
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 352, 791
Hin6I GCGC 2 cut(s) 114, 452
HinP1I GCGC 2 cut(s) 114, 452
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 7 cut(s) 283, 296, 599, 677, 739, 857, 1012
HpaII CCGG 4 cut(s) 69, 90, 494, 642
HphI GGTGA 2 cut(s) 16, 701
Hpy166II GTNNAC 1 cut(s) 1082
Hpy188I TCNGA 5 cut(s) 142, 240, 895, 928, 1030
Hpy188III TCNNGA 4 cut(s) 161, 349, 565, 596
Hpy8I GTNNAC 1 cut(s) 1082
HpyAV CCTTC 1 cut(s) 773
HpyCH4III ACNGT 4 cut(s) 25, 523, 912, 984
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 8 cut(s) 104, 479, 499, 704, 791, 798, 871, 901
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 65, 113, 326, 1031
HpyF3I CTNAG 3 cut(s) 219, 760, 925
HpySE526I ACGT 1 cut(s) 226
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 352, 791
HspAI GCGC 2 cut(s) 114, 452
Kzo9I GATC 6 cut(s) 142, 196, 361, 465, 826, 905
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 5 cut(s) 88, 116, 342, 491, 494
LweI GCATC 3 cut(s) 154, 807, 1034
MaeI CTAG 4 cut(s) 396, 582, 596, 716
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 122, 541
MalI GATC 6 cut(s) 144, 198, 363, 467, 828, 907
MbiI CCGCTC 1 cut(s) 697
MboI GATC 6 cut(s) 142, 196, 361, 465, 826, 905
MboII GAAGA 8 cut(s) 28, 31, 40, 206, 704, 737, 821, 1021
MfeI CAATTG 1 cut(s) 79
MflI RGATCY 2 cut(s) 196, 826
MluCI AATT 5 cut(s) 79, 474, 929, 1055, 1135
MlyI GAGTC 3 cut(s) 277, 593, 733
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 8 cut(s) 140, 186, 728, 753, 760, 795, 940, 1026
MseI TTAA 7 cut(s) 38, 324, 459, 509, 672, 821, 1040
MspI CCGG 4 cut(s) 69, 90, 494, 642
MspR9I CCNGG 3 cut(s) 90, 537, 606
MunI CAATTG 1 cut(s) 79
MvaI CCWGG 2 cut(s) 537, 606
MvnI CGCG 2 cut(s) 114, 162
MwoI GCNNNNNNNGC 5 cut(s) 51, 65, 113, 326, 1031
NciI CCSGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 96
NdeII GATC 6 cut(s) 142, 196, 361, 465, 826, 905
NlaIII CATG 2 cut(s) 352, 791
NlaIV GGNNCC 4 cut(s) 402, 618, 667, 1090
NruI TCGCGA 1 cut(s) 162
NspV TTCGAA 1 cut(s) 294
PagI TCATGA 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 687
PcsI WCGNNNNNNNCGW 3 cut(s) 118, 159, 166
PfeI GAWTC 4 cut(s) 296, 677, 857, 1012
PflFI GACNNNGTC 2 cut(s) 1086, 1106
PflMI CCANNNNNTGG 1 cut(s) 536
PinAI ACCGGT 1 cut(s) 641
PkrI GCNGC 5 cut(s) 103, 106, 357, 481, 484
PleI GAGTC 3 cut(s) 277, 593, 733
PpsI GAGTC 3 cut(s) 277, 593, 733
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 535, 604
PspGI CCWGG 2 cut(s) 535, 604
PspN4I GGNNCC 4 cut(s) 402, 618, 667, 1090
PspPI GGNCC 4 cut(s) 527, 666, 782, 1088
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 2 cut(s) 196, 826
PsyI GACNNNGTC 2 cut(s) 1086, 1106
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 7 cut(s) 38, 324, 459, 509, 672, 821, 1040
SatI GCNGC 5 cut(s) 102, 105, 356, 480, 483
Sau3AI GATC 6 cut(s) 142, 196, 361, 465, 826, 905
Sau96I GGNCC 4 cut(s) 527, 666, 782, 1088
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 3 cut(s) 277, 593, 733
ScrFI CCNGG 3 cut(s) 90, 537, 606
SfaNI GCATC 3 cut(s) 154, 807, 1034
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 3 cut(s) 527, 666, 1088
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 5 cut(s) 79, 474, 929, 1055, 1135
SsiI CCGC 3 cut(s) 45, 127, 697
SspMI CTAG 4 cut(s) 396, 582, 596, 716
StyD4I CCNGG 3 cut(s) 88, 535, 604
TaaI ACNGT 4 cut(s) 25, 523, 912, 984
TaiI ACGT 1 cut(s) 229
TaqI TCGA 8 cut(s) 153, 294, 464, 577, 636, 733, 801, 832
TasI AATT 5 cut(s) 79, 474, 929, 1055, 1135
TatI WGTACW 1 cut(s) 756
TfiI GAWTC 4 cut(s) 296, 677, 857, 1012
Tru1I TTAA 7 cut(s) 38, 324, 459, 509, 672, 821, 1040
Tru9I TTAA 7 cut(s) 38, 324, 459, 509, 672, 821, 1040
TscAI CASTG 2 cut(s) 30, 915
TseI GCWGC 5 cut(s) 101, 104, 355, 479, 482
TspDTI ATGAA 3 cut(s) 365, 737, 849
TspGWI ACGGA 2 cut(s) 658, 959
TspRI CASTG 2 cut(s) 30, 915
Tth111I GACNNNGTC 2 cut(s) 1086, 1106
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 3 cut(s) 527, 666, 1088
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 2 cut(s) 929, 1055
XbaI TCTAGA 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 1081
XspI CTAG 4 cut(s) 396, 582, 596, 716
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.