Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Reverse (-)

6778855 .. 6780899

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGGTTACGGTCAAAAGGGTTGGTGAAGAAGGGGATGATGGGGTTGGGAGAGATGGGTTTCAACACCGGAGGCGGAGCCATCAATTGGTTCCCCGGCCACATGGCTGCCGCCACACGCGCCATCCGCGATCGCCTCAAGTTCGCCGACTTCGTCATCGAGGTCCGCGACGCTCGAATTCCAATGTCCTCCGCCAACCAAGACTTCCAGCCCCAGCTCCGCGCCAAACACTCCTTCATTGTCATCAACAAGAAGGACCTCGCCAATCCCAACATCATGCAAACTCGATTTTTTGAATCCTCCAAGCAAGATTGCCTTCCCATCAATGCACATAGCAGGAGTTCGGTTTCCAAGGTATATTCAATGTTAACATCACTAGCAATTTTTGGCTTGCAATTTATTGATTTTTGGGTTCAAAATCCTGCAATGAGCACTGGGTTATTGAAGCTTCTTGAGCTGGTGGAGTATAAGTTGAAGGAAGCGATTTCGAGGGAACCCACTCTGCTTGTTATGGTTGCTGGTGTTCCTAATGTTGGGAAATCAGCTCTAATCAGTAATATTCATCGGATTGCATCCTCTCGCTTTCCCGATAAGAGGCAATCCACATTGAAGAATGACAGTGCTCGTGTTTCTTTCGTAGTTCAGGGGAAGATGAAGCGCGCCACGGTGGATCCGTTGCCTGGTGTTACTCAGGACATTGCTGGATTCAAGTTGAAGTCCTTTTTTGTACATGCAGGATCTATTAAGGACTCAGTGGTAGGGGAGGATCGAATTGCTCAATATTTACTTGCAGTTCTAAATTCACGAGGGACACCTTTTCACTGGAAGAACTCTAAAAATAGGAGAATGAAAGGGATTCAATATGAAGCCGAAGACAAAATTGATTACAGTCTTAAGAACCATCGACCTAATAGAAGGAAGGTGCCAAATAAGTCCGATATGCCGTACATTGAGTTAACAGAGATTACTGTAGTCTTGTCTGTCTTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

331

Amino Acids

36.96

Weight (kDa)

10.12

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccII	CGCG	5 cut(s)	120, 129, 168, 222, 660
AciI	CCGC	6 cut(s)	75, 111, 127, 166, 192, 220
AclWI	GGATC	4 cut(s)	665, 678, 745, 774
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	177, 799
AfaI	GTAC	2 cut(s)	729, 947
AfiI	CCNNNNNNNGG	4 cut(s)	87, 533, 594, 680
AflII	CTTAAG	1 cut(s)	893
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 218, 220, 250
AluBI	AGCT	4 cut(s)	217, 448, 457, 545
AluI	AGCT	4 cut(s)	217, 448, 457, 545
Alw21I	GWGCWC	2 cut(s)	434, 625
AlwI	GGATC	4 cut(s)	665, 678, 745, 774
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	177, 799
AsiSI	GCGATCGC	1 cut(s)	133
AspLEI	GCGC	4 cut(s)	122, 224, 660, 662
AspS9I	GGNCC	2 cut(s)	163, 256
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	163, 256
BamHI	GGATCC	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	922
BauI	CACGAG	2 cut(s)	624, 804
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	2 cut(s)	434, 625
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	6 cut(s)	34, 49, 89, 131, 329, 909
BceAI	ACGGC	1 cut(s)	928
BciT130I	CCWGG	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	969
BfrI	CTTAAG	1 cut(s)	893
BisI	GCNGC	2 cut(s)	108, 111
BlsI	GCNGC	2 cut(s)	109, 112
Bme1390I	CCNGG	2 cut(s)	96, 681
Bme18I	GGWCC	2 cut(s)	163, 256
BmgT120I	GGNCC	2 cut(s)	163, 256
BmiI	GGNNCC	5 cut(s)	79, 92, 495, 672, 924
BmrFI	CCNGG	2 cut(s)	96, 681
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	122, 473
BpuMI	CCSGG	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	94, 351, 663
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 533, 594, 680
Bse1I	ACTGG	2 cut(s)	439, 827
Bse3DI	GCAATG	2 cut(s)	432, 696
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	3 cut(s)	94, 351, 663
BseGI	GGATG	3 cut(s)	42, 123, 572
BseLI	CCNNNNNNNGG	4 cut(s)	87, 533, 594, 680
BseMI	GCAATG	2 cut(s)	432, 696
BseMII	CTCAG	2 cut(s)	704, 765
BseNI	ACTGG	2 cut(s)	439, 827
BsePI	GCGCGC	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	213
Bsh1236I	CGCG	5 cut(s)	120, 129, 168, 222, 660
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	922
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	434, 625
BsiSI	CCGG	2 cut(s)	69, 96
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	4 cut(s)	87, 533, 594, 680
BsmFI	GGGAC	1 cut(s)	823
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	434, 625
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	4 cut(s)	130, 670, 737, 766
BspACI	CCGC	6 cut(s)	75, 111, 127, 166, 192, 220
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	703, 764
BspFNI	CGCG	5 cut(s)	120, 129, 168, 222, 660
BspLI	GGNNCC	5 cut(s)	79, 92, 495, 672, 924
BspPI	GGATC	4 cut(s)	665, 678, 745, 774
BspT107I	GGYRCC	1 cut(s)	922
BspTI	CTTAAG	1 cut(s)	893
BsrDI	GCAATG	2 cut(s)	432, 696
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	439, 827
BssECI	CCNNGG	3 cut(s)	94, 351, 663
BssHII	GCGCGC	1 cut(s)	658
BssMI	GATC	4 cut(s)	130, 670, 737, 766
BssSI	CACGAG	2 cut(s)	624, 804
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	2 cut(s)	624, 804
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	5 cut(s)	12, 620, 667, 890, 970
BstAFI	CTTAAG	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	392, 660
BstDEI	CTNAG	2 cut(s)	690, 751
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	3 cut(s)	42, 123, 572
BstFNI	CGCG	5 cut(s)	120, 129, 168, 222, 660
BstHHI	GCGC	4 cut(s)	122, 224, 660, 662
BstKTI	GATC	4 cut(s)	133, 673, 740, 769
BstMBI	GATC	4 cut(s)	130, 670, 737, 766
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 126, 454
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	94, 679
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	5 cut(s)	120, 129, 168, 222, 660
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	670, 737
BstYI	RGATCY	2 cut(s)	670, 737
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	3 cut(s)	42, 123, 572
BtsIMutI	CAGTG	4 cut(s)	432, 625, 759, 820
Cac8I	GCNNGC	2 cut(s)	392, 660
CfoI	GCGC	4 cut(s)	122, 224, 660, 662
Cfr13I	GGNCC	2 cut(s)	163, 256
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	728, 946
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	3 cut(s)	103, 277, 731
CviQI	GTAC	2 cut(s)	728, 946
DdeI	CTNAG	2 cut(s)	690, 751
DpnI	GATC	4 cut(s)	132, 672, 739, 768
DpnII	GATC	4 cut(s)	130, 670, 737, 766
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	2 cut(s)	90, 181
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	163, 256
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	106, 280, 734
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	3 cut(s)	102, 276, 730
Fnu4HI	GCNGC	2 cut(s)	108, 111
FokI	GGATG	3 cut(s)	49, 110, 559
Fsp4HI	GCNGC	2 cut(s)	108, 111
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	4 cut(s)	121, 223, 659, 661
GluI	GCNGC	2 cut(s)	108, 111
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	69, 96
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	4 cut(s)	122, 224, 660, 662
Hin1II	CATG	3 cut(s)	106, 280, 734
Hin6I	GCGC	4 cut(s)	120, 222, 658, 660
HinP1I	GCGC	4 cut(s)	120, 222, 658, 660
HincII	GTYRAC	2 cut(s)	369, 957
HindII	GTYRAC	2 cut(s)	369, 957
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	296, 705, 749, 856
HpaI	GTTAAC	2 cut(s)	369, 957
HpaII	CCGG	2 cut(s)	69, 96
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	369, 957
Hpy188I	TCNGA	2 cut(s)	567, 937
Hpy188III	TCNNGA	4 cut(s)	452, 587, 692, 804
Hpy8I	GTNNAC	2 cut(s)	369, 957
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	7 cut(s)	25, 244, 247, 326, 469, 909, 913
HpyCH4III	ACNGT	5 cut(s)	12, 620, 667, 890, 970
HpyCH4V	TGCA	7 cut(s)	280, 329, 394, 425, 572, 734, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 126, 454
HpyF3I	CTNAG	2 cut(s)	690, 751
Hsp92II	CATG	3 cut(s)	106, 280, 734
HspAI	GCGC	4 cut(s)	120, 222, 658, 660
KspAI	GTTAAC	2 cut(s)	369, 957
Kzo9I	GATC	4 cut(s)	130, 670, 737, 766
LmnI	GCTCC	2 cut(s)	77, 222
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	6, 685
MalI	GATC	4 cut(s)	132, 672, 739, 768
MboI	GATC	4 cut(s)	130, 670, 737, 766
MboII	GAAGA	5 cut(s)	40, 622, 661, 838, 884
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	2 cut(s)	670, 737
MhlI	GDGCHC	2 cut(s)	434, 625
MluCI	AATT	7 cut(s)	85, 177, 381, 395, 771, 799, 879
MlyI	GAGTC	1 cut(s)	743
MseI	TTAA	4 cut(s)	368, 744, 894, 956
MspCI	CTTAAG	1 cut(s)	893
MspI	CCGG	2 cut(s)	69, 96
MspR9I	CCNGG	2 cut(s)	96, 681
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	5 cut(s)	120, 129, 168, 222, 660
MwoI	GCNNNNNNNGC	3 cut(s)	119, 126, 454
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	4 cut(s)	130, 670, 737, 766
NlaIII	CATG	3 cut(s)	106, 280, 734
NlaIV	GGNNCC	5 cut(s)	79, 92, 495, 672, 924
NspI	RCATGY	1 cut(s)	734
PauI	GCGCGC	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 165, 671
PfeI	GAWTC	3 cut(s)	296, 705, 856
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	109, 112
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	679
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	5 cut(s)	79, 92, 495, 672, 924
PspPI	GGNCC	2 cut(s)	163, 256
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	670, 737
PsyI	GACNNNGTC	1 cut(s)	152
PteI	GCGCGC	1 cut(s)	658
PvuI	CGATCG	1 cut(s)	133
RgaI	GCGATCGC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	729, 947
RsaNI	GTAC	2 cut(s)	728, 946
SaqAI	TTAA	4 cut(s)	368, 744, 894, 956
SatI	GCNGC	2 cut(s)	108, 111
Sau3AI	GATC	4 cut(s)	130, 670, 737, 766
Sau96I	GGNCC	2 cut(s)	163, 256
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	96, 681
SduI	GDGCHC	2 cut(s)	434, 625
SfaAI	GCGATCGC	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	581
SfcI	CTRYAG	1 cut(s)	969
SgfI	GCGATCGC	1 cut(s)	133
SinI	GGWCC	2 cut(s)	163, 256
SmlI	CTYRAG	3 cut(s)	137, 452, 893
SmoI	CTYRAG	3 cut(s)	137, 452, 893
Sse9I	AATT	7 cut(s)	85, 177, 381, 395, 771, 799, 879
SsiI	CCGC	6 cut(s)	75, 111, 127, 166, 192, 220
SspI	AATATT	2 cut(s)	559, 782
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	94, 679
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	5 cut(s)	12, 620, 667, 890, 970
TaqI	TCGA	6 cut(s)	159, 175, 286, 488, 769, 904
TasI	AATT	7 cut(s)	85, 177, 381, 395, 771, 799, 879
TatI	WGTACW	1 cut(s)	727
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	296, 705, 856
Tru1I	TTAA	4 cut(s)	368, 744, 894, 956
Tru9I	TTAA	4 cut(s)	368, 744, 894, 956
TscAI	CASTG	4 cut(s)	439, 625, 759, 827
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	5 cut(s)	226, 551, 668, 863, 879
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	4 cut(s)	439, 625, 759, 827
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	893
VpaK11BI	GGWCC	2 cut(s)	163, 256
XapI	RAATTY	2 cut(s)	177, 799
XceI	RCATGY	1 cut(s)	734
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.