FvH4_6g24210

Mitochondrial

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
18248278 .. 18253836
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24210.t1

Sequence Viewer

Length: 1134 bp
ATGGTGACAGGAGGACTAAAGGAAGTAGTGAAGAAGGGTCTGGGGTTGGCAGAGATGGAGTTCATCACCGGCGGCGGAGCCATCAACTGGTTCCCAGGCCACATGGCTGCTGCCACCACCGCCATCCGTGACCGCCTCAAGCTCGCCGACCTCGTCATTGAGGTCCGTGACGCTCGCATTCCGTTGTCCTCCGCCAATCAGGACCTTCAGTCCCAACTCTGCTCCAAACGCTCCCTTGTTGCCCTCAACAAGAAGGACCTCGCCAACCCCAACATCATGCACAGATGGACTCGGTTTTTCGAATCGTCTGGGAAAGATTGCATTCCCATCAGTGCGCATAGCAAGAGTTCTGTTTCCAAGCTTCTGGAGCTGGTGGAGTATAAACTGAAGGAGGTGATTTCGAGAGAACCCACCCTGCTTGTTATGGTTGTTGGGGTTCCTAATGTTGGCAAATCAGCTCTGATTAATTCTATTCATCAGATTGCGTCGTCTCGCTTTCCGATGCAGGGGAAGATGAAGCGAGCTACGGTCGGCCCTTTGCCTGGTGTTACTCTAGACATTGCTGGATACAAGATTGCTCATCAGCCTAGCATATATGTTCTTGACACTCCAGGTGTATTGGTTCCAAGTATCCCAGACATAGAGACAGGGTTAAAGCTAGCTCTTGCAGGATCTGTTAAAGATTCGGTGGTGGGGGAGGAACGTATTGCTCAATACTTACTTGCAGTTCTAAATACTAGAAGGACTCCTCTTCACTGGCGAAACTCACATAATAGCAGAATGGAAGGCATTCAATATGAAGCTGAGGAAAAAGTTGACTATAGTCTTAAAAATCTTCGACCAAGGAGGAAGCTGCCAAATAAGTCTGGTGTACTGTACGTTGAGGATCTGGTAACAAAAGTAGAATGTGCACTCTATTCGACTCTGTCAGAATTTGATGGCAGTGTAGATGATGAAGCTGACTTGGAGGTGCTTATAGATCTGCAGTTTGAAGCACTGCAGAAGGCACTGAAGATAGGTAACAAGGGGCCAGAAGCTCGGTTGATGGTATCTAAAAAATTTCTTACCCTATTCAGAACAGGTAAGTTAGGTCCTTTCATCCTTGATGATGTCCCGGATTCTAATTTTCCTTGA

Protein Analysis

378

Amino Acids

41.5

Weight (kDa)

9.01

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 141 - 245 3.8e-12 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
AccB7I CCANNNNNTGG 1 cut(s) 87
AciI CCGC 5 cut(s) 72, 75, 120, 133, 192
AclWI GGATC 2 cut(s) 679, 894
AcsI RAATTY 2 cut(s) 932, 1058
AcuI CTGAAG 3 cut(s) 191, 407, 1031
AfaI GTAC 2 cut(s) 873, 878
AfiI CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
AgsI TTSAA 2 cut(s) 794, 992
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 3 cut(s) 94, 541, 610
Alw21I GWGCWC 1 cut(s) 913
Alw26I GTCTC 2 cut(s) 495, 638
Alw44I GTGCAC 1 cut(s) 909
AlwI GGATC 2 cut(s) 679, 894
AlwNI CAGNNNCTG 1 cut(s) 674
AoxI GGCC 3 cut(s) 97, 532, 1028
ApaLI GTGCAC 1 cut(s) 909
ApeKI GCWGC 3 cut(s) 107, 110, 853
ApoI RAATTY 2 cut(s) 932, 1058
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 6 cut(s) 163, 202, 256, 533, 1028, 1091
AsuC2I CCSGG 1 cut(s) 1115
AsuHPI GGTGA 3 cut(s) 16, 58, 406
AsuII TTCGAA 1 cut(s) 300
AsuNHI GCTAGC 1 cut(s) 658
AvaII GGWCC 4 cut(s) 163, 202, 256, 1091
BaeGI GKGCMC 1 cut(s) 913
Bbv12I GWGCWC 1 cut(s) 913
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 3 cut(s) 94, 97, 840
BccI CCATC 7 cut(s) 49, 89, 131, 279, 335, 932, 1039
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciT130I CCWGG 3 cut(s) 96, 543, 612
BciVI GTATCC 2 cut(s) 560, 641
BcnI CCSGG 1 cut(s) 1115
BcoDI GTCTC 2 cut(s) 495, 638
BfaI CTAG 4 cut(s) 554, 588, 659, 738
BfmI CTRYAG 3 cut(s) 820, 983, 998
BfuI GTATCC 2 cut(s) 560, 641
BglII AGATCT 1 cut(s) 979
BisI GCNGC 4 cut(s) 73, 108, 111, 854
BlsI GCNGC 4 cut(s) 74, 109, 112, 855
Bme1390I CCNGG 4 cut(s) 96, 543, 612, 1115
Bme18I GGWCC 4 cut(s) 163, 202, 256, 1091
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 6 cut(s) 163, 202, 256, 533, 1028, 1091
BmiI GGNNCC 5 cut(s) 79, 92, 438, 624, 1029
BmrFI CCNGG 4 cut(s) 96, 543, 612, 1115
BmsI GCATC 1 cut(s) 492
BmtI GCTAGC 1 cut(s) 662
BoxI GACNNNNGTC 1 cut(s) 822
BpmI CTGGAG 2 cut(s) 386, 594
Bpu10I CCTNAGC 1 cut(s) 804
Bpu14I TTCGAA 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 1115
BsaJI CCNNGG 2 cut(s) 94, 842
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 92, 761
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 3 cut(s) 96, 543, 612
BseDI CCNNGG 2 cut(s) 94, 842
BseGI GGATG 2 cut(s) 123, 1098
BseLI CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 2 cut(s) 92, 761
BseRI GAGGAG 1 cut(s) 738
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 3 cut(s) 94, 97, 840
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 3 cut(s) 99, 534, 1030
BsiEI CGRYCG 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 913
BsiSI CCGG 2 cut(s) 69, 1115
BslFI GGGAC 2 cut(s) 196, 1097
BslI CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
BsmAI GTCTC 2 cut(s) 495, 638
BsmBI CGTCTC 1 cut(s) 495
BsmFI GGGAC 2 cut(s) 196, 1097
BsmI GAATGC 3 cut(s) 177, 321, 789
BsnI GGCC 3 cut(s) 99, 534, 1030
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 913
Bsp143I GATC 3 cut(s) 671, 886, 979
BspACI CCGC 5 cut(s) 72, 75, 120, 133, 192
BspANI GGCC 3 cut(s) 99, 534, 1030
BspCNI CTCAG 1 cut(s) 796
BspLI GGNNCC 5 cut(s) 79, 92, 438, 624, 1029
BspMAI CTGCAG 2 cut(s) 987, 1002
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 2 cut(s) 679, 894
BspT104I TTCGAA 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 92, 761
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 94, 842
BssMI GATC 3 cut(s) 671, 886, 979
BssT1I CCWWGG 1 cut(s) 842
Bst2UI CCWGG 3 cut(s) 96, 543, 612
Bst4CI ACNGT 2 cut(s) 529, 876
Bst6I CTCTTC 1 cut(s) 756
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 4 cut(s) 144, 175, 522, 660
BstDEI CTNAG 1 cut(s) 804
BstF5I GGATG 2 cut(s) 123, 1098
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 3 cut(s) 674, 889, 982
BstMAI GTCTC 2 cut(s) 495, 638
BstMBI GATC 3 cut(s) 671, 886, 979
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 3 cut(s) 119, 228, 367
BstNI CCWGG 3 cut(s) 96, 543, 612
BstPAI GACNNNNGTC 1 cut(s) 822
BstSCI CCNGG 4 cut(s) 94, 541, 610, 1113
BstSFI CTRYAG 3 cut(s) 820, 983, 998
BstSLI GKGCMC 1 cut(s) 913
BstV1I GCAGC 3 cut(s) 94, 97, 840
BstX2I RGATCY 3 cut(s) 671, 886, 979
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 3 cut(s) 671, 886, 979
BsuI GTATCC 2 cut(s) 560, 641
BsuRI GGCC 3 cut(s) 99, 534, 1030
BtsCI GGATG 2 cut(s) 123, 1098
BtsI GCAGTG 2 cut(s) 949, 995
BtsIMutI CAGTG 5 cut(s) 337, 754, 949, 995, 1007
Cac8I GCNNGC 4 cut(s) 144, 175, 522, 660
CaiI CAGNNNCTG 1 cut(s) 674
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 6 cut(s) 163, 202, 256, 533, 1028, 1091
CseI GACGC 2 cut(s) 179, 474
Csp6I GTAC 2 cut(s) 872, 877
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 2 cut(s) 103, 277
CviQI GTAC 2 cut(s) 872, 877
DdeI CTNAG 1 cut(s) 804
DpnI GATC 3 cut(s) 673, 888, 981
DpnII GATC 3 cut(s) 671, 886, 979
DriI GACNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 756
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 756
EciI GGCGGA 2 cut(s) 90, 181
Eco130I CCWWGG 1 cut(s) 842
Eco47I GGWCC 4 cut(s) 163, 202, 256, 1091
Eco57I CTGAAG 3 cut(s) 191, 407, 1031
EcoO109I RGGNCCY 3 cut(s) 202, 256, 1091
EcoRII CCWGG 3 cut(s) 94, 541, 610
EcoT14I CCWWGG 1 cut(s) 842
ErhI CCWWGG 1 cut(s) 842
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 2 cut(s) 106, 280
FaqI GGGAC 2 cut(s) 196, 1097
FatI CATG 2 cut(s) 102, 276
Fnu4HI GCNGC 4 cut(s) 73, 108, 111, 854
FokI GGATG 2 cut(s) 110, 1085
Fsp4HI GCNGC 4 cut(s) 73, 108, 111, 854
FspAI RTGCGCAY 1 cut(s) 336
FspBI CTAG 4 cut(s) 554, 588, 659, 738
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 1 cut(s) 336
GluI GCNGC 4 cut(s) 73, 108, 111, 854
GsuI CTGGAG 2 cut(s) 386, 594
HaeIII GGCC 3 cut(s) 99, 534, 1030
HapII CCGG 2 cut(s) 69, 1115
HgaI GACGC 2 cut(s) 179, 474
HhaI GCGC 1 cut(s) 337
Hin1II CATG 2 cut(s) 106, 280
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 6 cut(s) 289, 302, 683, 745, 922, 1118
HpaII CCGG 2 cut(s) 69, 1115
HphI GGTGA 3 cut(s) 16, 58, 406
Hpy166II GTNNAC 3 cut(s) 817, 872, 911
Hpy188I TCNGA 5 cut(s) 462, 480, 501, 931, 1076
Hpy188III TCNNGA 5 cut(s) 200, 365, 402, 554, 602
Hpy8I GTNNAC 3 cut(s) 817, 872, 911
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 7 cut(s) 28, 215, 247, 382, 735, 779, 997
HpyCH4III ACNGT 2 cut(s) 529, 876
HpyCH4IV ACGT 2 cut(s) 703, 879
HpyCH4V TGCA 8 cut(s) 280, 321, 505, 668, 725, 911, 985, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 228, 367
HpyF3I CTNAG 1 cut(s) 804
HpySE526I ACGT 2 cut(s) 703, 879
Hsp92II CATG 2 cut(s) 106, 280
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 3 cut(s) 671, 886, 979
LmnI GCTCC 4 cut(s) 77, 227, 236, 367
Lsp1109I GCAGC 3 cut(s) 94, 97, 840
LweI GCATC 1 cut(s) 492
MaeI CTAG 4 cut(s) 554, 588, 659, 738
MaeII ACGT 2 cut(s) 703, 879
MaeIII GTNAC 6 cut(s) 4, 128, 167, 547, 892, 1019
MalI GATC 3 cut(s) 673, 888, 981
MboI GATC 3 cut(s) 671, 886, 979
MboII GAAGA 5 cut(s) 43, 523, 743, 827, 1024
MflI RGATCY 3 cut(s) 671, 886, 979
MhlI GDGCHC 1 cut(s) 913
MluCI AATT 4 cut(s) 466, 932, 1058, 1123
MlyI GAGTC 3 cut(s) 283, 739, 916
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 4 cut(s) 465, 653, 678, 828
MspI CCGG 2 cut(s) 69, 1115
MspR9I CCNGG 4 cut(s) 96, 543, 612, 1115
Mva1269I GAATGC 3 cut(s) 177, 321, 789
MvaI CCWGG 3 cut(s) 96, 543, 612
MwoI GCNNNNNNNGC 3 cut(s) 119, 228, 367
NciI CCSGG 1 cut(s) 1115
NdeII GATC 3 cut(s) 671, 886, 979
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 2 cut(s) 106, 280
NlaIV GGNNCC 5 cut(s) 79, 92, 438, 624, 1029
NmuCI GTSAC 3 cut(s) 4, 128, 167
NsbI TGCGCA 1 cut(s) 336
NspV TTCGAA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 3 cut(s) 177, 321, 789
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 3 cut(s) 302, 683, 1118
PflFI GACNNNGTC 2 cut(s) 152, 925
PflMI CCANNNNNTGG 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 1113
PkrI GCNGC 4 cut(s) 74, 109, 112, 855
PleI GAGTC 3 cut(s) 283, 739, 916
PpsI GAGTC 3 cut(s) 283, 739, 916
PpuMI RGGWCCY 3 cut(s) 202, 256, 1091
PshAI GACNNNNGTC 1 cut(s) 822
PshBI ATTAAT 1 cut(s) 465
Psp5II RGGWCCY 3 cut(s) 202, 256, 1091
Psp6I CCWGG 3 cut(s) 94, 541, 610
PspGI CCWGG 3 cut(s) 94, 541, 610
PspN4I GGNNCC 5 cut(s) 79, 92, 438, 624, 1029
PspPI GGNCC 6 cut(s) 163, 202, 256, 533, 1028, 1091
PspPPI RGGWCCY 3 cut(s) 202, 256, 1091
PstI CTGCAG 2 cut(s) 987, 1002
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 3 cut(s) 671, 886, 979
PsyI GACNNNGTC 2 cut(s) 152, 925
RsaI GTAC 2 cut(s) 873, 878
RsaNI GTAC 2 cut(s) 872, 877
SaqAI TTAA 4 cut(s) 465, 653, 678, 828
SatI GCNGC 4 cut(s) 73, 108, 111, 854
Sau3AI GATC 3 cut(s) 671, 886, 979
Sau96I GGNCC 6 cut(s) 163, 202, 256, 533, 1028, 1091
SchI GAGTC 3 cut(s) 283, 739, 916
ScrFI CCNGG 4 cut(s) 96, 543, 612, 1115
SduI GDGCHC 1 cut(s) 913
SfaNI GCATC 1 cut(s) 492
SfcI CTRYAG 3 cut(s) 820, 983, 998
SfuI TTCGAA 1 cut(s) 300
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 4 cut(s) 163, 202, 256, 1091
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 466, 932, 1058, 1123
SsiI CCGC 5 cut(s) 72, 75, 120, 133, 192
SspMI CTAG 4 cut(s) 554, 588, 659, 738
StyD4I CCNGG 4 cut(s) 94, 541, 610, 1113
StyI CCWWGG 1 cut(s) 842
TaaI ACNGT 2 cut(s) 529, 876
TaiI ACGT 2 cut(s) 706, 882
TaqI TCGA 4 cut(s) 300, 401, 838, 920
TasI AATT 4 cut(s) 466, 932, 1058, 1123
TatI WGTACW 1 cut(s) 871
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 3 cut(s) 302, 683, 1118
Tru1I TTAA 4 cut(s) 465, 653, 678, 828
Tru9I TTAA 4 cut(s) 465, 653, 678, 828
TscAI CASTG 5 cut(s) 337, 761, 949, 1002, 1014
TseFI GTSAC 3 cut(s) 4, 128, 167
TseI GCWGC 3 cut(s) 107, 110, 853
Tsp45I GTSAC 3 cut(s) 4, 128, 167
TspDTI ATGAA 6 cut(s) 52, 464, 530, 813, 969, 1087
TspGWI ACGGA 3 cut(s) 116, 155, 171
TspRI CASTG 5 cut(s) 337, 761, 949, 1002, 1014
Tth111I GACNNNGTC 2 cut(s) 152, 925
Van91I CCANNNNNTGG 1 cut(s) 87
VneI GTGCAC 1 cut(s) 909
VpaK11BI GGWCC 4 cut(s) 163, 202, 256, 1091
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 2 cut(s) 932, 1058
XbaI TCTAGA 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 4 cut(s) 554, 588, 659, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.