RchiOBHm_Chr3g0482961

Mitochondrial

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
29036252 .. 29041851
5600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44777

Sequence Viewer

Length: 1125 bp
ATGGGCCCAGGAGGATTGAAGGAAGTGGTGAAGAAGTTGGCAGAGATGGAGTTCATCAGCGGCGGCGGAGCCATCAACTGGTTCCCAGGCCACATGGCTGCTGCCACCACCGCCATCCGCGAGCGCCTCAAGCTCGCCGACCTCGTCATTGAGGTCCGCGACGCTCGCATTCCTTTGTCCTCTGCCAATCAGGACCTTCAGCCCCAACTCCGCTCCAAACGCTCCCTTGTTGCCCTCAACAAGAAGGACCTTGCCAACCCCAATATCATGCACAGATGGACTCGGTTTTTCGAATCGTCCGGGAAAGATTGCCTACCCATTAGTGCACATAGCAAGAGTTCTGTTTCCAAGCTTCTTGAGCTGGTGGAGTATAAACTGAAGGAGGTGATTTCAAGGGAGCCCACCCTGCTTGTTATGGTCGTTGGCGTTCCTAATGTTGGCAAATCAGCTCTGATTAATTCTATTCATCAGATTGCGTCGTCTCGCTTTCCTGTGCAGGGGAAGATGAAGCGAGCTACGGTCGGTCCGTTGCCTGGTGTTACTCAAGACATTGCTGGATACAAGATTGCTCATCAGCCTAGCATATATGTTCTTGACACTCCAGGTGTATTGGTTCCAAGTATCCCGGACATAGAGACAGGGTTAAAGCTAGCTCTTGCAGGATCTGTTAAAGATTCAGTGGTGGGGGAGGATCGTATTGCTCAATACTTACTTGCAGTTCTAAATACTAGAAGGACTCCTCTTCACTGGCGGAACTCACATAATAGCAGAACGGAAGGCGTTCAATATGAAGCTGAGGAAAAAGTTGACTATAGTCTTAAAAATCTTCGACCAAGGAGGAAGCTGCCAAATAAGTCTGATGTACTGTACATTGAGGATCTTGTAACGAAAGTACAGTGTGCACTCTATTCGACTCTGTCAGAATTTGATGGCAGTGTAGATGATGAAGCTGACTTGGAGGTGCTTATAGATCAGCAGTTTGAAGCACTGCAGAAGGCACTGAAGATAGCTAACAAGGGGCCAGAAGCTCGGTTGATGGTATCGAAAAAATTTCTTACCTTATTTAGAACGGGGAAGTTAGGTCCTTTCATCCTTGATGATGTCCCGGATTCTAATTTACCTTAA

Protein Analysis

374

Amino Acids

41.28

Weight (kDa)

9.17

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 138 - 211 3.9e-12 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 2 cut(s) 120, 159
AciI CCGC 8 cut(s) 60, 63, 66, 111, 118, 157, 211, 751
AclWI GGATC 3 cut(s) 670, 699, 885
AcsI RAATTY 2 cut(s) 923, 1049
AcuI CTGAAG 3 cut(s) 182, 398, 1022
AfaI GTAC 3 cut(s) 864, 869, 894
AfiI CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
AgsI TTSAA 4 cut(s) 19, 393, 785, 983
AjnI CCWGG 4 cut(s) 7, 85, 532, 601
Alw21I GWGCWC 2 cut(s) 328, 904
Alw26I GTCTC 2 cut(s) 486, 629
Alw44I GTGCAC 2 cut(s) 324, 900
AlwI GGATC 3 cut(s) 670, 699, 885
AlwNI CAGNNNCTG 1 cut(s) 665
AoxI GGCC 3 cut(s) 4, 88, 1019
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 2 cut(s) 324, 900
ApeKI GCWGC 3 cut(s) 98, 101, 844
ApoI RAATTY 2 cut(s) 923, 1049
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 8 cut(s) 4, 5, 154, 193, 247, 524, 1019, 1082
AsuC2I CCSGG 3 cut(s) 301, 626, 1106
AsuHPI GGTGA 2 cut(s) 40, 397
AsuII TTCGAA 1 cut(s) 291
AsuNHI GCTAGC 1 cut(s) 649
AvaII GGWCC 5 cut(s) 154, 193, 247, 524, 1082
BaeGI GKGCMC 3 cut(s) 8, 328, 904
BanII GRGCYC 2 cut(s) 8, 402
Bbv12I GWGCWC 2 cut(s) 328, 904
BbvCI CCTCAGC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 85, 88, 831
BccI CCATC 6 cut(s) 40, 80, 122, 270, 923, 1030
BcgI CGANNNNNNTGC 2 cut(s) 891, 925
BciT130I CCWGG 4 cut(s) 9, 87, 534, 603
BciVI GTATCC 2 cut(s) 551, 632
BcnI CCSGG 3 cut(s) 301, 626, 1106
BcoDI GTCTC 2 cut(s) 486, 629
BfaI CTAG 3 cut(s) 579, 650, 729
BfmI CTRYAG 2 cut(s) 811, 989
BfoI RGCGCY 1 cut(s) 127
BfuI GTATCC 2 cut(s) 551, 632
BisI GCNGC 5 cut(s) 61, 64, 99, 102, 845
BlsI GCNGC 5 cut(s) 62, 65, 100, 103, 846
Bme1390I CCNGG 7 cut(s) 9, 87, 301, 534, 603, 626, 1106
Bme18I GGWCC 5 cut(s) 154, 193, 247, 524, 1082
BmgT120I GGNCC 8 cut(s) 4, 5, 154, 193, 247, 524, 1019, 1082
BmiI GGNNCC 6 cut(s) 6, 70, 83, 399, 615, 1020
BmrFI CCNGG 7 cut(s) 9, 87, 301, 534, 603, 626, 1106
BmtI GCTAGC 1 cut(s) 653
BoxI GACNNNNGTC 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 3 cut(s) 113, 377, 528
BpuMI CCSGG 3 cut(s) 301, 626, 1106
BsaJI CCNNGG 3 cut(s) 7, 85, 833
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
Bse1I ACTGG 2 cut(s) 83, 752
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 4 cut(s) 9, 87, 534, 603
BseDI CCNNGG 3 cut(s) 7, 85, 833
BseGI GGATG 2 cut(s) 114, 1089
BseLI CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 786
BseNI ACTGG 2 cut(s) 83, 752
BseRI GAGGAG 1 cut(s) 729
BseSI GKGCMC 3 cut(s) 8, 328, 904
BseXI GCAGC 3 cut(s) 85, 88, 831
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 2 cut(s) 120, 159
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 3 cut(s) 6, 90, 1021
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 2 cut(s) 328, 904
BsiSI CCGG 3 cut(s) 300, 626, 1106
BslFI GGGAC 1 cut(s) 1088
BslI CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
BsmAI GTCTC 2 cut(s) 486, 629
BsmBI CGTCTC 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 1088
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 3 cut(s) 6, 90, 1021
Bsp119I TTCGAA 1 cut(s) 291
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 4 cut(s) 8, 328, 402, 904
Bsp1407I TGTACA 1 cut(s) 867
Bsp143I GATC 4 cut(s) 662, 691, 877, 970
BspACI CCGC 8 cut(s) 60, 63, 66, 111, 118, 157, 211, 751
BspANI GGCC 3 cut(s) 6, 90, 1021
BspCNI CTCAG 1 cut(s) 787
BspFNI CGCG 2 cut(s) 120, 159
BspLI GGNNCC 6 cut(s) 6, 70, 83, 399, 615, 1020
BspMAI CTGCAG 1 cut(s) 993
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 3 cut(s) 670, 699, 885
BspT104I TTCGAA 1 cut(s) 291
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 549
BsrGI TGTACA 1 cut(s) 867
BsrI ACTGG 2 cut(s) 83, 752
BssECI CCNNGG 3 cut(s) 7, 85, 833
BssMI GATC 4 cut(s) 662, 691, 877, 970
BssT1I CCWWGG 1 cut(s) 833
Bst2UI CCWGG 4 cut(s) 9, 87, 534, 603
Bst4CI ACNGT 3 cut(s) 520, 867, 897
Bst6I CTCTTC 1 cut(s) 747
BstAUI TGTACA 1 cut(s) 867
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 5 cut(s) 122, 135, 166, 513, 651
BstDEI CTNAG 1 cut(s) 795
BstF5I GGATG 2 cut(s) 114, 1089
BstFNI CGCG 2 cut(s) 120, 159
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 4 cut(s) 665, 694, 880, 973
BstMAI GTCTC 2 cut(s) 486, 629
BstMBI GATC 4 cut(s) 662, 691, 877, 970
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 6 cut(s) 110, 130, 165, 219, 358, 406
BstNI CCWGG 4 cut(s) 9, 87, 534, 603
BstPAI GACNNNNGTC 1 cut(s) 813
BstSCI CCNGG 7 cut(s) 7, 85, 299, 532, 601, 624, 1104
BstSFI CTRYAG 2 cut(s) 811, 989
BstSLI GKGCMC 3 cut(s) 8, 328, 904
BstUI CGCG 2 cut(s) 120, 159
BstV1I GCAGC 3 cut(s) 85, 88, 831
BstX2I RGATCY 2 cut(s) 662, 877
BstYI RGATCY 2 cut(s) 662, 877
BsuI GTATCC 2 cut(s) 551, 632
BsuRI GGCC 3 cut(s) 6, 90, 1021
BtsCI GGATG 2 cut(s) 114, 1089
BtsI GCAGTG 2 cut(s) 940, 986
BtsIMutI CAGTG 6 cut(s) 684, 745, 902, 940, 986, 998
Cac8I GCNNGC 5 cut(s) 122, 135, 166, 513, 651
CaiI CAGNNNCTG 1 cut(s) 665
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 8 cut(s) 4, 5, 154, 193, 247, 524, 1019, 1082
CpoI CGGWCCG 1 cut(s) 524
CseI GACGC 2 cut(s) 170, 465
Csp6I GTAC 3 cut(s) 863, 868, 893
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CspI CGGWCCG 1 cut(s) 524
CviAII CATG 2 cut(s) 94, 268
CviQI GTAC 3 cut(s) 863, 868, 893
DdeI CTNAG 1 cut(s) 795
DpnI GATC 4 cut(s) 664, 693, 879, 972
DpnII GATC 4 cut(s) 662, 691, 877, 970
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EciI GGCGGA 2 cut(s) 81, 766
Eco130I CCWWGG 1 cut(s) 833
Eco24I GRGCYC 2 cut(s) 8, 402
Eco47I GGWCC 5 cut(s) 154, 193, 247, 524, 1082
Eco57I CTGAAG 3 cut(s) 182, 398, 1022
EcoO109I RGGNCCY 3 cut(s) 193, 247, 1082
EcoRII CCWGG 4 cut(s) 7, 85, 532, 601
EcoT14I CCWWGG 1 cut(s) 833
EcoT38I GRGCYC 2 cut(s) 8, 402
ErhI CCWWGG 1 cut(s) 833
Esp3I CGTCTC 1 cut(s) 486
FaeI CATG 2 cut(s) 97, 271
FaqI GGGAC 1 cut(s) 1088
FatI CATG 2 cut(s) 93, 267
Fnu4HI GCNGC 5 cut(s) 61, 64, 99, 102, 845
FokI GGATG 2 cut(s) 101, 1076
FriOI GRGCYC 2 cut(s) 8, 402
Fsp4HI GCNGC 5 cut(s) 61, 64, 99, 102, 845
FspBI CTAG 3 cut(s) 579, 650, 729
GlaI GCGC 1 cut(s) 125
GluI GCNGC 5 cut(s) 61, 64, 99, 102, 845
GsuI CTGGAG 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 3 cut(s) 6, 90, 1021
HapII CCGG 3 cut(s) 300, 626, 1106
HgaI GACGC 2 cut(s) 170, 465
HhaI GCGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 97, 271
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 6 cut(s) 280, 293, 674, 736, 913, 1109
HpaII CCGG 3 cut(s) 300, 626, 1106
HphI GGTGA 2 cut(s) 40, 397
Hpy166II GTNNAC 3 cut(s) 326, 808, 902
Hpy188I TCNGA 4 cut(s) 453, 471, 859, 922
Hpy188III TCNNGA 4 cut(s) 191, 356, 545, 593
Hpy8I GTNNAC 3 cut(s) 326, 808, 902
Hpy99I CGWCG 2 cut(s) 164, 481
HpyAV CCTTC 7 cut(s) 13, 206, 238, 373, 726, 770, 988
HpyCH4III ACNGT 3 cut(s) 520, 867, 897
HpyCH4V TGCA 7 cut(s) 271, 326, 496, 659, 716, 902, 991
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 130, 165, 219, 358, 406
HpyF3I CTNAG 1 cut(s) 795
Hsp92II CATG 2 cut(s) 97, 271
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 662, 691, 877, 970
LmnI GCTCC 4 cut(s) 68, 218, 227, 397
Lsp1109I GCAGC 3 cut(s) 85, 88, 831
MaeI CTAG 3 cut(s) 579, 650, 729
MaeIII GTNAC 2 cut(s) 538, 883
MalI GATC 4 cut(s) 664, 693, 879, 972
MbiI CCGCTC 1 cut(s) 213
MboI GATC 4 cut(s) 662, 691, 877, 970
MboII GAAGA 5 cut(s) 43, 514, 734, 818, 1015
MflI RGATCY 2 cut(s) 662, 877
MhlI GDGCHC 4 cut(s) 8, 328, 402, 904
MluCI AATT 4 cut(s) 457, 923, 1049, 1114
MlyI GAGTC 3 cut(s) 274, 730, 907
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 5 cut(s) 456, 644, 669, 819, 1123
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 3 cut(s) 300, 626, 1106
MspR9I CCNGG 7 cut(s) 9, 87, 301, 534, 603, 626, 1106
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 4 cut(s) 9, 87, 534, 603
MvnI CGCG 2 cut(s) 120, 159
MwoI GCNNNNNNNGC 6 cut(s) 110, 130, 165, 219, 358, 406
NciI CCSGG 3 cut(s) 301, 626, 1106
NdeII GATC 4 cut(s) 662, 691, 877, 970
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 2 cut(s) 97, 271
NlaIV GGNNCC 6 cut(s) 6, 70, 83, 399, 615, 1020
NspV TTCGAA 1 cut(s) 291
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 524
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 3 cut(s) 293, 674, 1109
PflFI GACNNNGTC 2 cut(s) 143, 916
PflMI CCANNNNNTGG 1 cut(s) 78
PfoI TCCNGGA 3 cut(s) 299, 624, 1104
PkrI GCNGC 5 cut(s) 62, 65, 100, 103, 846
PleI GAGTC 3 cut(s) 274, 730, 907
PpsI GAGTC 3 cut(s) 274, 730, 907
PpuMI RGGWCCY 3 cut(s) 193, 247, 1082
PshAI GACNNNNGTC 1 cut(s) 813
PshBI ATTAAT 1 cut(s) 456
Psp5II RGGWCCY 3 cut(s) 193, 247, 1082
Psp6I CCWGG 4 cut(s) 7, 85, 532, 601
PspGI CCWGG 4 cut(s) 7, 85, 532, 601
PspN4I GGNNCC 6 cut(s) 6, 70, 83, 399, 615, 1020
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 8 cut(s) 4, 5, 154, 193, 247, 524, 1019, 1082
PspPPI RGGWCCY 3 cut(s) 193, 247, 1082
PstI CTGCAG 1 cut(s) 993
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 2 cut(s) 662, 877
PsyI GACNNNGTC 2 cut(s) 143, 916
RsaI GTAC 3 cut(s) 864, 869, 894
RsaNI GTAC 3 cut(s) 863, 868, 893
Rsr2I CGGWCCG 1 cut(s) 524
RsrII CGGWCCG 1 cut(s) 524
SaqAI TTAA 5 cut(s) 456, 644, 669, 819, 1123
SatI GCNGC 5 cut(s) 61, 64, 99, 102, 845
Sau3AI GATC 4 cut(s) 662, 691, 877, 970
Sau96I GGNCC 8 cut(s) 4, 5, 154, 193, 247, 524, 1019, 1082
SchI GAGTC 3 cut(s) 274, 730, 907
ScrFI CCNGG 7 cut(s) 9, 87, 301, 534, 603, 626, 1106
SduI GDGCHC 4 cut(s) 8, 328, 402, 904
SfcI CTRYAG 2 cut(s) 811, 989
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 5 cut(s) 154, 193, 247, 524, 1082
SmlI CTYRAG 3 cut(s) 128, 356, 543
SmoI CTYRAG 3 cut(s) 128, 356, 543
Sse9I AATT 4 cut(s) 457, 923, 1049, 1114
SsiI CCGC 8 cut(s) 60, 63, 66, 111, 118, 157, 211, 751
SspMI CTAG 3 cut(s) 579, 650, 729
StyD4I CCNGG 7 cut(s) 7, 85, 299, 532, 601, 624, 1104
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 3 cut(s) 520, 867, 897
TaqI TCGA 4 cut(s) 291, 829, 911, 1043
TaqII GACCGA 1 cut(s) 512
TasI AATT 4 cut(s) 457, 923, 1049, 1114
TatI WGTACW 3 cut(s) 862, 867, 892
TauI GCSGC 2 cut(s) 63, 66
TfiI GAWTC 3 cut(s) 293, 674, 1109
Tru1I TTAA 5 cut(s) 456, 644, 669, 819, 1123
Tru9I TTAA 5 cut(s) 456, 644, 669, 819, 1123
TscAI CASTG 6 cut(s) 684, 752, 902, 940, 993, 1005
TseI GCWGC 3 cut(s) 98, 101, 844
TspDTI ATGAA 6 cut(s) 43, 455, 521, 804, 960, 1078
TspGWI ACGGA 2 cut(s) 516, 788
TspRI CASTG 6 cut(s) 684, 752, 902, 940, 993, 1005
Tth111I GACNNNGTC 2 cut(s) 143, 916
Van91I CCANNNNNTGG 1 cut(s) 78
VneI GTGCAC 2 cut(s) 324, 900
VpaK11BI GGWCC 5 cut(s) 154, 193, 247, 524, 1082
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 2 cut(s) 923, 1049
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 3 cut(s) 579, 650, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.