Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Forward (+)

6299036 .. 6301941

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06380.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGTTAGGGTCGAAAGGGTTGGTTAAGAAGGGGATGATGGGGTTGGGAGAGATGGGTTTCAACACCGGAGGCGGAGCCATCAATTGGTTCCCAGGCCACATGGCTGCCGCCACACGGGCCATCCGCGATCGCCTCAAGCTCGCCGACTTCGTTATCGAGGTCCGCGACGCTCGGATTCCACTGTCCTCTGCCAACCAAGACCTCCAGCCCCAACTCCGCGCCAAACGCTCCCTCATTGTCCTCAACAAGAAGGACCTCGCCAATACCAATATCATGCAAAAATGGACTCGGTTTTTCGAATCGTCCAAGCAAGATTGCCTTCCTATAAATGCACATAGCAGGAGTTCTGTTTCCAAGCTTCTCGAGCTGGTGGAGTATAAGCTGAAGGAAGCGATTTCGAGGGAACCTACTCTGCTTGTTATGGTGGTTGGTGTTCCTAATGTTGGGAAATCAGCTCTAATCAATAATATTCATCGGATTGCATCATCTCGCTTTCCCGTTCAGGGGAAGATGAAGCACGCTACCGTGGGTCCATTGCCTGGCGTTACTCAAGACATTGCTGGATTCAAGATTGCTCATCAGCCTAGCATATATGTTCTTGACACTCCAGGTGTTTTGGTTCCAAGTATCCCTGACATCGAGACGGGGTTAAAGCTAGCTCTTGCAGGATCTATTAAGGACTCAGTGGTAGGAGAGGATCGAATTGCCCAATACTTACTTGCAGTTCTAAATTCACGAGGGACACCTTTTCACTGGAAGAACTCAAATAATAGGAGAATGGAAGGGATTCAATATGAAACCGAGGGAAAAATTGATTACAGCCTTAAGAACCTTCGACCTAATAGAAGGAAGGTGCCAAATAAGTCCGATGTGCTGTACATTGAGGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

299

Amino Acids

32.83

Weight (kDa)

9.97

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	856
AccB7I	CCANNNNNTGG	2 cut(s)	87, 542
AccII	CGCG	3 cut(s)	129, 168, 222
AciI	CCGC	5 cut(s)	75, 111, 127, 166, 220
AclWI	GGATC	2 cut(s)	679, 708
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	881
AfiI	CCNNNNNNNGG	6 cut(s)	87, 117, 446, 506, 507, 542
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	3 cut(s)	64, 571, 794
AjnI	CCWGG	3 cut(s)	94, 541, 610
AluBI	AGCT	7 cut(s)	142, 361, 370, 385, 458, 658, 662
AluI	AGCT	7 cut(s)	142, 361, 370, 385, 458, 658, 662
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	2 cut(s)	679, 708
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	97, 120
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	733
AsiSI	GCGATCGC	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	789
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	4 cut(s)	120, 163, 256, 533
AsuII	TTCGAA	1 cut(s)	300
AsuNHI	GCTAGC	1 cut(s)	658
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	3 cut(s)	163, 256, 533
BanI	GGYRCC	1 cut(s)	856
BauI	CACGAG	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	4 cut(s)	34, 49, 89, 131
BciT130I	CCWGG	3 cut(s)	96, 543, 612
BciVI	GTATCC	1 cut(s)	641
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	2 cut(s)	588, 659
BfrI	CTTAAG	1 cut(s)	827
BfuI	GTATCC	1 cut(s)	641
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	108, 111
BlsI	GCNGC	2 cut(s)	109, 112
Bme1390I	CCNGG	3 cut(s)	96, 543, 612
Bme18I	GGWCC	3 cut(s)	163, 256, 533
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	4 cut(s)	120, 163, 256, 533
BmiI	GGNNCC	6 cut(s)	79, 92, 408, 534, 624, 858
BmrFI	CCNGG	3 cut(s)	96, 543, 612
BmsI	GCATC	1 cut(s)	494
BmtI	GCTAGC	1 cut(s)	662
BpmI	CTGGAG	2 cut(s)	191, 594
Bpu14I	TTCGAA	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	122, 537
BsaJI	CCNNGG	3 cut(s)	94, 528, 804
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	6 cut(s)	87, 117, 446, 506, 507, 542
Bse1I	ACTGG	1 cut(s)	761
Bse3DI	GCAATG	2 cut(s)	536, 558
BseBI	CCWGG	3 cut(s)	96, 543, 612
BseDI	CCNNGG	3 cut(s)	94, 528, 804
BseGI	GGATG	2 cut(s)	42, 123
BseLI	CCNNNNNNNGG	6 cut(s)	87, 117, 446, 506, 507, 542
BseMI	GCAATG	2 cut(s)	536, 558
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	761
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	3 cut(s)	129, 168, 222
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	99, 122
BshNI	GGYRCC	1 cut(s)	856
BsiEI	CGRYCG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	6 cut(s)	87, 117, 446, 506, 507, 542
BsmAI	GTCTC	1 cut(s)	638
BsmBI	CGTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	2 cut(s)	99, 122
BsoBI	CYCGRG	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	3 cut(s)	130, 671, 700
BspACI	CCGC	5 cut(s)	75, 111, 127, 166, 220
BspANI	GGCC	2 cut(s)	99, 122
BspCNI	CTCAG	1 cut(s)	698
BspFNI	CGCG	3 cut(s)	129, 168, 222
BspLI	GGNNCC	6 cut(s)	79, 92, 408, 534, 624, 858
BspOI	GCTAGC	1 cut(s)	662
BspPI	GGATC	2 cut(s)	679, 708
BspT104I	TTCGAA	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	856
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	2 cut(s)	536, 558
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	761
BssECI	CCNNGG	3 cut(s)	94, 528, 804
BssMI	GATC	3 cut(s)	130, 671, 700
BssSI	CACGAG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	738
Bst2UI	CCWGG	3 cut(s)	96, 543, 612
Bst4CI	ACNGT	2 cut(s)	186, 529
BstAFI	CTTAAG	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	879
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	144, 522, 660
BstDEI	CTNAG	1 cut(s)	685
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	42, 123
BstFNI	CGCG	3 cut(s)	129, 168, 222
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	133, 674, 703
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	3 cut(s)	130, 671, 700
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 228, 367
BstNI	CCWGG	3 cut(s)	96, 543, 612
BstSCI	CCNGG	3 cut(s)	94, 541, 610
BstUI	CGCG	3 cut(s)	129, 168, 222
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	2 cut(s)	99, 122
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	42, 123
BtsIMutI	CAGTG	3 cut(s)	182, 693, 754
Cac8I	GCNNGC	3 cut(s)	144, 522, 660
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	4 cut(s)	120, 163, 256, 533
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	880
CviAII	CATG	2 cut(s)	103, 277
CviQI	GTAC	1 cut(s)	880
DdeI	CTNAG	1 cut(s)	685
DpnI	GATC	3 cut(s)	132, 673, 702
DpnII	GATC	3 cut(s)	130, 671, 700
EciI	GGCGGA	1 cut(s)	90
Eco47I	GGWCC	3 cut(s)	163, 256, 533
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	3 cut(s)	94, 541, 610
Esp3I	CGTCTC	1 cut(s)	638
FaeI	CATG	2 cut(s)	106, 280
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	2 cut(s)	102, 276
Fnu4HI	GCNGC	2 cut(s)	108, 111
FokI	GGATG	2 cut(s)	49, 110
Fsp4HI	GCNGC	2 cut(s)	108, 111
FspBI	CTAG	2 cut(s)	588, 659
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	2 cut(s)	108, 111
GsuI	CTGGAG	2 cut(s)	191, 594
HaeIII	GGCC	2 cut(s)	99, 122
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	106, 280
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	6 cut(s)	178, 289, 302, 567, 683, 790
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	177, 480, 871
Hpy188III	TCNNGA	6 cut(s)	365, 554, 571, 602, 643, 738
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	8 cut(s)	25, 247, 332, 382, 779, 843, 845, 847
HpyCH4III	ACNGT	2 cut(s)	186, 529
HpyCH4V	TGCA	5 cut(s)	280, 335, 485, 668, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 228, 367
HpyF3I	CTNAG	1 cut(s)	685
Hsp92II	CATG	2 cut(s)	106, 280
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	130, 671, 700
LmnI	GCTCC	2 cut(s)	77, 236
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	2 cut(s)	588, 659
MaeIII	GTNAC	2 cut(s)	547, 890
MalI	GATC	3 cut(s)	132, 673, 702
MboI	GATC	3 cut(s)	130, 671, 700
MboII	GAAGA	2 cut(s)	523, 772
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	671
MluCI	AATT	4 cut(s)	85, 705, 733, 813
MlyI	GAGTC	2 cut(s)	283, 677
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	4 cut(s)	27, 653, 678, 828
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	3 cut(s)	96, 543, 612
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	3 cut(s)	96, 543, 612
MvnI	CGCG	3 cut(s)	129, 168, 222
MwoI	GCNNNNNNNGC	3 cut(s)	119, 228, 367
NdeII	GATC	3 cut(s)	130, 671, 700
NheI	GCTAGC	1 cut(s)	658
NlaIII	CATG	2 cut(s)	106, 280
NlaIV	GGNNCC	6 cut(s)	79, 92, 408, 534, 624, 858
NspV	TTCGAA	1 cut(s)	300
PaeR7I	CTCGAG	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 165
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	4 cut(s)	178, 302, 567, 790
PflMI	CCANNNNNTGG	2 cut(s)	87, 542
PkrI	GCNGC	2 cut(s)	109, 112
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	2 cut(s)	283, 677
PpsI	GAGTC	2 cut(s)	283, 677
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	94, 541, 610
PspGI	CCWGG	3 cut(s)	94, 541, 610
PspN4I	GGNNCC	6 cut(s)	79, 92, 408, 534, 624, 858
PspPI	GGNCC	4 cut(s)	120, 163, 256, 533
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	671
PvuI	CGATCG	1 cut(s)	133
RgaI	GCGATCGC	1 cut(s)	133
RsaI	GTAC	1 cut(s)	881
RsaNI	GTAC	1 cut(s)	880
SaqAI	TTAA	4 cut(s)	27, 653, 678, 828
SatI	GCNGC	2 cut(s)	108, 111
Sau3AI	GATC	3 cut(s)	130, 671, 700
Sau96I	GGNCC	4 cut(s)	120, 163, 256, 533
SchI	GAGTC	2 cut(s)	283, 677
ScrFI	CCNGG	3 cut(s)	96, 543, 612
SfaAI	GCGATCGC	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	494
Sfr274I	CTCGAG	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	300
SgfI	GCGATCGC	1 cut(s)	133
SinI	GGWCC	3 cut(s)	163, 256, 533
SlaI	CTCGAG	1 cut(s)	365
SmlI	CTYRAG	4 cut(s)	137, 365, 552, 827
SmoI	CTYRAG	4 cut(s)	137, 365, 552, 827
Sse9I	AATT	4 cut(s)	85, 705, 733, 813
SsiI	CCGC	5 cut(s)	75, 111, 127, 166, 220
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	2 cut(s)	588, 659
StyD4I	CCNGG	3 cut(s)	94, 541, 610
TaaI	ACNGT	2 cut(s)	186, 529
TaqI	TCGA	8 cut(s)	14, 159, 300, 366, 401, 642, 703, 838
TasI	AATT	4 cut(s)	85, 705, 733, 813
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	4 cut(s)	178, 302, 567, 790
Tru1I	TTAA	4 cut(s)	27, 653, 678, 828
Tru9I	TTAA	4 cut(s)	27, 653, 678, 828
TscAI	CASTG	3 cut(s)	189, 693, 761
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	464, 530, 813
TspRI	CASTG	3 cut(s)	189, 693, 761
Van91I	CCANNNNNTGG	2 cut(s)	87, 542
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	3 cut(s)	163, 256, 533
XapI	RAATTY	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	2 cut(s)	588, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.