Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Reverse (-)

28715642 .. 28721116

Gene Structure 5475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTGCTGCCACCACCGCCATCCGCGACCGCCTGAAGCTCGCCGACCTCGTCATTGAGGTCCGCGACGCTCGCATTCCCTTGTCCTCTGCCAATCAGGACCTTCAGCCCCAACTCCGCTCCAAACGCTCCCTTGTTGCCCTCAACAAGAAAGACCTCGCCAACCCCAATATCATGCACAGATGGACTCGGTTTTTCGAATCGTCCGGGAAAGATTGCATACCCATTAGTGCACATAGCAAGAGTTCTGTTTCCAAGCTTCTTGAGCTGGTGGAGTATAAACTGAAGGAGGTGATTTCAAGGGAACCCACCCTACTTGTCATGGTCGTTGGCGTTCCTAATGTTGGAAAATCAGCTCTGATTAATTCTATTCATCAGATTGCGTCGTCTCGCTTTCCTGTGCAGGGGAAGATGAAGCGAGCTACAGTCGGTCCATTGCCTGGTGTTACTCAAGACATTGCTGGATACAAGATTGCTCATCAGCCTAGCATATATGTTCTTGACACTCCAGGTGTATTGGTTCCAAGTATCCCGGACATAGAGACAGGGTTAAAGCTAGCTCTTGCAGGATCTGTTAAAGATTCAGTGGTGGGGGAGGATCGTATTGCTCAATACTTACTTGCAGTTCTAAATACTAGAAGGACTCCTCTTCACTGGCGGAACTCACATAATAGCAGAACGGAAGGCATTCAATATGAAGCTGAGGAAAAAGTTGACTATAGTCTTAAAAATCTTCGACCAAGGAGGAAGCTGCCAAATAAGTCTGATGTGCTGTACATTGAGGATCTTGTAACGAAAGTACAGTGTGCACTCTATTCGACTCTGTCAGAATTTGATGGCAGTGTAGATGATGAAGCTGACTTGGAGGTGCTTATAGATCAGCAGTTTGAAGCACTGCAGAAGGCACTGAAGATAGCTAACAAGGGGCCAGAAGCTCGGTTGATGGTATCGAAAAAATTTCTTACCTTATTTAGAACAGGGAAGTTAGGTCCTTTCATCCTTGATGATGTCCCGGATTCTAATTTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

343

Amino Acids

38.04

Weight (kDa)

9.21

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	107 - 180	3.2e-12	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	120
AccII	CGCG	2 cut(s)	27, 66
AciI	CCGC	6 cut(s)	18, 25, 31, 64, 118, 658
AclWI	GGATC	3 cut(s)	577, 606, 792
AcsI	RAATTY	2 cut(s)	830, 956
AcuI	CTGAAG	4 cut(s)	56, 89, 305, 929
AfaI	GTAC	2 cut(s)	776, 801
AfiI	CCNNNNNNNGG	3 cut(s)	344, 404, 440
AgsI	TTSAA	3 cut(s)	300, 692, 890
AjnI	CCWGG	2 cut(s)	439, 508
Alw21I	GWGCWC	2 cut(s)	235, 811
Alw26I	GTCTC	2 cut(s)	393, 536
Alw44I	GTGCAC	2 cut(s)	231, 807
AlwI	GGATC	3 cut(s)	577, 606, 792
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	1 cut(s)	926
ApaLI	GTGCAC	2 cut(s)	231, 807
ApeKI	GCWGC	3 cut(s)	5, 8, 751
ApoI	RAATTY	2 cut(s)	830, 956
AseI	ATTAAT	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	687
AspS9I	GGNCC	5 cut(s)	61, 100, 431, 926, 989
AsuC2I	CCSGG	3 cut(s)	208, 533, 1013
AsuHPI	GGTGA	1 cut(s)	304
AsuII	TTCGAA	1 cut(s)	198
AsuNHI	GCTAGC	1 cut(s)	556
AvaII	GGWCC	4 cut(s)	61, 100, 431, 989
BaeGI	GKGCMC	2 cut(s)	235, 811
Bbv12I	GWGCWC	2 cut(s)	235, 811
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	738
BccI	CCATC	4 cut(s)	29, 177, 830, 937
BcgI	CGANNNNNNTGC	2 cut(s)	798, 832
BciT130I	CCWGG	2 cut(s)	441, 510
BciVI	GTATCC	2 cut(s)	458, 539
BcnI	CCSGG	3 cut(s)	208, 533, 1013
BcoDI	GTCTC	2 cut(s)	393, 536
BfaI	CTAG	3 cut(s)	486, 557, 636
BfmI	CTRYAG	3 cut(s)	423, 718, 896
BfuI	GTATCC	2 cut(s)	458, 539
BisI	GCNGC	3 cut(s)	6, 9, 752
BlsI	GCNGC	3 cut(s)	7, 10, 753
Bme1390I	CCNGG	5 cut(s)	208, 441, 510, 533, 1013
Bme18I	GGWCC	4 cut(s)	61, 100, 431, 989
BmgT120I	GGNCC	5 cut(s)	61, 100, 431, 926, 989
BmiI	GGNNCC	3 cut(s)	306, 522, 927
BmrFI	CCNGG	5 cut(s)	208, 441, 510, 533, 1013
BmtI	GCTAGC	1 cut(s)	560
BoxI	GACNNNNGTC	1 cut(s)	720
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	702
Bpu14I	TTCGAA	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	284, 435
BpuMI	CCSGG	3 cut(s)	208, 533, 1013
BsaJI	CCNNGG	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 404, 440
Bse1I	ACTGG	1 cut(s)	659
Bse3DI	GCAATG	2 cut(s)	434, 456
BseBI	CCWGG	2 cut(s)	441, 510
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	2 cut(s)	21, 996
BseLI	CCNNNNNNNGG	3 cut(s)	344, 404, 440
BseMI	GCAATG	2 cut(s)	434, 456
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	1 cut(s)	636
BseSI	GKGCMC	2 cut(s)	235, 811
BseXI	GCAGC	1 cut(s)	738
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	27, 66
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	928
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	235, 811
BsiSI	CCGG	3 cut(s)	207, 533, 1013
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	3 cut(s)	344, 404, 440
BsmAI	GTCTC	2 cut(s)	393, 536
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	995
BsmI	GAATGC	2 cut(s)	75, 687
BsnI	GGCC	1 cut(s)	928
Bsp119I	TTCGAA	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	235, 811
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	4 cut(s)	569, 598, 784, 877
BspACI	CCGC	6 cut(s)	18, 25, 31, 64, 118, 658
BspANI	GGCC	1 cut(s)	928
BspCNI	CTCAG	1 cut(s)	694
BspFNI	CGCG	2 cut(s)	27, 66
BspLI	GGNNCC	3 cut(s)	306, 522, 927
BspMAI	CTGCAG	1 cut(s)	900
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	3 cut(s)	577, 606, 792
BspT104I	TTCGAA	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	434, 456
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	659
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	4 cut(s)	569, 598, 784, 877
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	2 cut(s)	441, 510
Bst4CI	ACNGT	2 cut(s)	427, 804
Bst6I	CTCTTC	1 cut(s)	654
BstAUI	TGTACA	1 cut(s)	774
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	4 cut(s)	42, 73, 420, 558
BstDEI	CTNAG	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	21, 996
BstFNI	CGCG	2 cut(s)	27, 66
BstKTI	GATC	4 cut(s)	572, 601, 787, 880
BstMAI	GTCTC	2 cut(s)	393, 536
BstMBI	GATC	4 cut(s)	569, 598, 784, 877
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 72, 126, 265
BstNI	CCWGG	2 cut(s)	441, 510
BstPAI	GACNNNNGTC	1 cut(s)	720
BstSCI	CCNGG	5 cut(s)	206, 439, 508, 531, 1011
BstSFI	CTRYAG	3 cut(s)	423, 718, 896
BstSLI	GKGCMC	2 cut(s)	235, 811
BstUI	CGCG	2 cut(s)	27, 66
BstV1I	GCAGC	1 cut(s)	738
BstX2I	RGATCY	2 cut(s)	569, 784
BstYI	RGATCY	2 cut(s)	569, 784
BsuI	GTATCC	2 cut(s)	458, 539
BsuRI	GGCC	1 cut(s)	928
BtsCI	GGATG	2 cut(s)	21, 996
BtsI	GCAGTG	2 cut(s)	847, 893
BtsIMutI	CAGTG	6 cut(s)	591, 652, 809, 847, 893, 905
Cac8I	GCNNGC	4 cut(s)	42, 73, 420, 558
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr13I	GGNCC	5 cut(s)	61, 100, 431, 926, 989
CseI	GACGC	2 cut(s)	77, 372
Csp6I	GTAC	2 cut(s)	775, 800
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	2 cut(s)	175, 322
CviQI	GTAC	2 cut(s)	775, 800
DdeI	CTNAG	1 cut(s)	702
DpnI	GATC	4 cut(s)	571, 600, 786, 879
DpnII	GATC	4 cut(s)	569, 598, 784, 877
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
EciI	GGCGGA	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	740
Eco47I	GGWCC	4 cut(s)	61, 100, 431, 989
Eco57I	CTGAAG	4 cut(s)	56, 89, 305, 929
EcoO109I	RGGNCCY	2 cut(s)	100, 989
EcoRII	CCWGG	2 cut(s)	439, 508
EcoT14I	CCWWGG	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	740
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	2 cut(s)	178, 325
FaqI	GGGAC	1 cut(s)	995
FatI	CATG	2 cut(s)	174, 321
Fnu4HI	GCNGC	3 cut(s)	6, 9, 752
FokI	GGATG	2 cut(s)	8, 983
Fsp4HI	GCNGC	3 cut(s)	6, 9, 752
FspBI	CTAG	3 cut(s)	486, 557, 636
GluI	GCNGC	3 cut(s)	6, 9, 752
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	928
HapII	CCGG	3 cut(s)	207, 533, 1013
HgaI	GACGC	2 cut(s)	77, 372
Hin1II	CATG	2 cut(s)	178, 325
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	6 cut(s)	187, 200, 581, 643, 820, 1016
HpaII	CCGG	3 cut(s)	207, 533, 1013
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	3 cut(s)	233, 715, 809
Hpy188I	TCNGA	4 cut(s)	360, 378, 766, 829
Hpy188III	TCNNGA	4 cut(s)	98, 263, 452, 500
Hpy8I	GTNNAC	3 cut(s)	233, 715, 809
Hpy99I	CGWCG	2 cut(s)	71, 388
HpyAV	CCTTC	5 cut(s)	113, 280, 633, 677, 895
HpyCH4III	ACNGT	2 cut(s)	427, 804
HpyCH4V	TGCA	8 cut(s)	178, 219, 233, 403, 566, 623, 809, 898
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 72, 126, 265
HpyF3I	CTNAG	1 cut(s)	702
Hsp92II	CATG	2 cut(s)	178, 325
Kzo9I	GATC	4 cut(s)	569, 598, 784, 877
LmnI	GCTCC	2 cut(s)	125, 134
Lsp1109I	GCAGC	1 cut(s)	738
MaeI	CTAG	3 cut(s)	486, 557, 636
MaeIII	GTNAC	2 cut(s)	445, 790
MalI	GATC	4 cut(s)	571, 600, 786, 879
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	4 cut(s)	569, 598, 784, 877
MboII	GAAGA	4 cut(s)	421, 641, 725, 922
MflI	RGATCY	2 cut(s)	569, 784
MhlI	GDGCHC	2 cut(s)	235, 811
MluCI	AATT	4 cut(s)	364, 830, 956, 1021
MlyI	GAGTC	3 cut(s)	181, 637, 814
MmeI	TCCRAC	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	5 cut(s)	363, 551, 576, 726, 1030
MspI	CCGG	3 cut(s)	207, 533, 1013
MspR9I	CCNGG	5 cut(s)	208, 441, 510, 533, 1013
Mva1269I	GAATGC	2 cut(s)	75, 687
MvaI	CCWGG	2 cut(s)	441, 510
MvnI	CGCG	2 cut(s)	27, 66
MwoI	GCNNNNNNNGC	4 cut(s)	17, 72, 126, 265
NciI	CCSGG	3 cut(s)	208, 533, 1013
NdeII	GATC	4 cut(s)	569, 598, 784, 877
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	2 cut(s)	178, 325
NlaIV	GGNNCC	3 cut(s)	306, 522, 927
NspV	TTCGAA	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	2 cut(s)	75, 687
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	200, 581, 1016
PflFI	GACNNNGTC	2 cut(s)	50, 823
PflMI	CCANNNNNTGG	1 cut(s)	440
PfoI	TCCNGGA	3 cut(s)	206, 531, 1011
PkrI	GCNGC	3 cut(s)	7, 10, 753
PleI	GAGTC	3 cut(s)	181, 637, 814
PpsI	GAGTC	3 cut(s)	181, 637, 814
PpuMI	RGGWCCY	2 cut(s)	100, 989
PshAI	GACNNNNGTC	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	363
Psp5II	RGGWCCY	2 cut(s)	100, 989
Psp6I	CCWGG	2 cut(s)	439, 508
PspGI	CCWGG	2 cut(s)	439, 508
PspN4I	GGNNCC	3 cut(s)	306, 522, 927
PspPI	GGNCC	5 cut(s)	61, 100, 431, 926, 989
PspPPI	RGGWCCY	2 cut(s)	100, 989
PsrI	GAACNNNNNNTAC	2 cut(s)	297, 329
PstI	CTGCAG	1 cut(s)	900
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	569, 784
PsyI	GACNNNGTC	2 cut(s)	50, 823
RsaI	GTAC	2 cut(s)	776, 801
RsaNI	GTAC	2 cut(s)	775, 800
SaqAI	TTAA	5 cut(s)	363, 551, 576, 726, 1030
SatI	GCNGC	3 cut(s)	6, 9, 752
Sau3AI	GATC	4 cut(s)	569, 598, 784, 877
Sau96I	GGNCC	5 cut(s)	61, 100, 431, 926, 989
SchI	GAGTC	3 cut(s)	181, 637, 814
ScrFI	CCNGG	5 cut(s)	208, 441, 510, 533, 1013
SduI	GDGCHC	2 cut(s)	235, 811
SfcI	CTRYAG	3 cut(s)	423, 718, 896
SfuI	TTCGAA	1 cut(s)	198
SinI	GGWCC	4 cut(s)	61, 100, 431, 989
SmlI	CTYRAG	2 cut(s)	263, 450
SmoI	CTYRAG	2 cut(s)	263, 450
Sse9I	AATT	4 cut(s)	364, 830, 956, 1021
SsiI	CCGC	6 cut(s)	18, 25, 31, 64, 118, 658
SspMI	CTAG	3 cut(s)	486, 557, 636
StyD4I	CCNGG	5 cut(s)	206, 439, 508, 531, 1011
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	2 cut(s)	427, 804
TaqI	TCGA	4 cut(s)	198, 736, 818, 950
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	4 cut(s)	364, 830, 956, 1021
TatI	WGTACW	2 cut(s)	774, 799
TfiI	GAWTC	3 cut(s)	200, 581, 1016
Tru1I	TTAA	5 cut(s)	363, 551, 576, 726, 1030
Tru9I	TTAA	5 cut(s)	363, 551, 576, 726, 1030
TscAI	CASTG	6 cut(s)	591, 659, 809, 847, 900, 912
TseI	GCWGC	3 cut(s)	5, 8, 751
TspDTI	ATGAA	5 cut(s)	362, 428, 711, 867, 985
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	6 cut(s)	591, 659, 809, 847, 900, 912
Tth111I	GACNNNGTC	2 cut(s)	50, 823
Van91I	CCANNNNNTGG	1 cut(s)	440
VneI	GTGCAC	2 cut(s)	231, 807
VpaK11BI	GGWCC	4 cut(s)	61, 100, 431, 989
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	830, 956
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	3 cut(s)	486, 557, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.