Rh3DG280900

Mitochondrial

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
28522648 .. 28528571
5924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG280900.1

Sequence Viewer

Length: 1134 bp
ATGGGCCCAGGAGGATTGAAGGAAGTGGTGAAGAAGGGTCTGGTATTGGCAGAGATGGAGTTCATCAGCGGCGGTGGAGCCATCAACTGGTTCCCAGGCCACATGGCTGCTGCCACCACCGCCATCCGCGAGCGCCTCAAGCTCGCCGACCTCGTCATTGAGGTCCGCGACGCTCGCATTCCTTTGTCCTCTGCCAATCAGGACCTTCAGCCCCAACTCCGCTCCAAACGCTCCCTTGTTGCCCTCAACAAGAAGGACCTCGCCAACCCCAATATCATGCACAGATGGACTCGGTTTTTCGAATCGTCCGGGAAAGATTGCCTACCCATAAGTGCACATAGCAAGAGTTCTGTTTCCAAGCTTCTTGAGCTGGTGGAGTATAAACTGAAGGAGGTGATTTCAAGGGAGCCCACCCTGCTTGTTATGGTCGTTGGCGTTCCTAATGTTGGCAAATCAGCTCTGATTAATTCTATTCATCAGATTGCGTCGTCTCGCTTTCCTGTGCAGGGGAAGATGAAGCGAGCTACGGTCGGTCCATTGCCTGGTGTTACTCAAGACATTGCTGGATACAAGATTGCTCATCAGCCTAGCATATATGTTCTTGACACTCCAGGTGTATTGGTTCCAAGTATCCCGGACATAGAGACAGGGTTAAAGCTAGCCCTTGCAGGATCTGTTAAAGATTCGGTGGTGGGGGAGGATCGTATTGCTCAATACTTACTTGCAGTTCTAAATACTAGAAGGACTCCTCTTCACTGGCGGAACTCACATAATAGCAGAACAGAAGGCATTCAATATGAAGCTGAGGAAAAAGTTGAGTATAGTCTTAAAAATCTTCGACCAAGGAGGAAGCTGCCAAATAAGTCTGATGTACTGTACATTGAGGATCTTGTAACAAAAGTACAGTGTGCACTCTATTCGACTCTGTCAGAATTTGATGGCAGTGTAGATGATGAAGCTGACTTGGAGGTGCTTATAGATCAGCAGTTTGAAGCACTGCAGAAGGCACTGAAGATAGCTAACAAGGGGCCAGAAGCTCGGTTGATGGTATCGAAAAAATTTCTTACCTTATTTAGAACGGGGAAGTTAGGTCCTTTCATCCTTGATGATGTCCCGGATTCTAATTTACCTTAA

Protein Analysis

377

Amino Acids

41.57

Weight (kDa)

9.17

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 141 - 214 3.8e-12 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 87, 542
AccBSI CCGCTC 1 cut(s) 222
AccII CGCG 2 cut(s) 129, 168
AciI CCGC 7 cut(s) 69, 72, 120, 127, 166, 220, 760
AclWI GGATC 3 cut(s) 679, 708, 894
AcsI RAATTY 2 cut(s) 932, 1058
AcuI CTGAAG 3 cut(s) 191, 407, 1031
AfaI GTAC 3 cut(s) 873, 878, 903
AfiI CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
AgsI TTSAA 4 cut(s) 19, 402, 794, 992
AjnI CCWGG 4 cut(s) 7, 94, 541, 610
Alw21I GWGCWC 2 cut(s) 337, 913
Alw26I GTCTC 2 cut(s) 495, 638
Alw44I GTGCAC 2 cut(s) 333, 909
AlwI GGATC 3 cut(s) 679, 708, 894
AlwNI CAGNNNCTG 1 cut(s) 674
AoxI GGCC 3 cut(s) 4, 97, 1028
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 2 cut(s) 333, 909
ApeKI GCWGC 3 cut(s) 107, 110, 853
ApoI RAATTY 2 cut(s) 932, 1058
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 8 cut(s) 4, 5, 163, 202, 256, 533, 1028, 1091
AsuC2I CCSGG 3 cut(s) 310, 635, 1115
AsuHPI GGTGA 2 cut(s) 40, 406
AsuII TTCGAA 1 cut(s) 300
AsuNHI GCTAGC 1 cut(s) 658
AvaII GGWCC 5 cut(s) 163, 202, 256, 533, 1091
BaeGI GKGCMC 3 cut(s) 8, 337, 913
BanII GRGCYC 2 cut(s) 8, 411
Bbv12I GWGCWC 2 cut(s) 337, 913
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 3 cut(s) 94, 97, 840
BccI CCATC 6 cut(s) 49, 89, 131, 279, 932, 1039
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciT130I CCWGG 4 cut(s) 9, 96, 543, 612
BciVI GTATCC 2 cut(s) 560, 641
BcnI CCSGG 3 cut(s) 310, 635, 1115
BcoDI GTCTC 2 cut(s) 495, 638
BfaI CTAG 3 cut(s) 588, 659, 738
BfmI CTRYAG 1 cut(s) 998
BfoI RGCGCY 1 cut(s) 136
BfuI GTATCC 2 cut(s) 560, 641
BisI GCNGC 4 cut(s) 70, 108, 111, 854
BlsI GCNGC 4 cut(s) 71, 109, 112, 855
Bme1390I CCNGG 7 cut(s) 9, 96, 310, 543, 612, 635, 1115
Bme18I GGWCC 5 cut(s) 163, 202, 256, 533, 1091
BmgT120I GGNCC 8 cut(s) 4, 5, 163, 202, 256, 533, 1028, 1091
BmiI GGNNCC 6 cut(s) 6, 79, 92, 408, 624, 1029
BmrFI CCNGG 7 cut(s) 9, 96, 310, 543, 612, 635, 1115
BmtI GCTAGC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 804
Bpu14I TTCGAA 1 cut(s) 300
BpuEI CTTGAG 3 cut(s) 122, 386, 537
BpuMI CCSGG 3 cut(s) 310, 635, 1115
BsaJI CCNNGG 3 cut(s) 7, 94, 842
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
Bse1I ACTGG 2 cut(s) 92, 761
Bse3DI GCAATG 2 cut(s) 536, 558
BseBI CCWGG 4 cut(s) 9, 96, 543, 612
BseDI CCNNGG 3 cut(s) 7, 94, 842
BseGI GGATG 2 cut(s) 123, 1098
BseLI CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
BseMI GCAATG 2 cut(s) 536, 558
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 2 cut(s) 92, 761
BseRI GAGGAG 1 cut(s) 738
BseSI GKGCMC 3 cut(s) 8, 337, 913
BseXI GCAGC 3 cut(s) 94, 97, 840
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 2 cut(s) 129, 168
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 3 cut(s) 6, 99, 1030
BsiEI CGRYCG 1 cut(s) 531
BsiHKAI GWGCWC 2 cut(s) 337, 913
BsiSI CCGG 3 cut(s) 309, 635, 1115
BslFI GGGAC 1 cut(s) 1097
BslI CCNNNNNNNGG 4 cut(s) 87, 446, 506, 542
BsmAI GTCTC 2 cut(s) 495, 638
BsmBI CGTCTC 1 cut(s) 495
BsmFI GGGAC 1 cut(s) 1097
BsmI GAATGC 2 cut(s) 177, 789
BsnI GGCC 3 cut(s) 6, 99, 1030
Bsp119I TTCGAA 1 cut(s) 300
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 4 cut(s) 8, 337, 411, 913
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 4 cut(s) 671, 700, 886, 979
BspACI CCGC 7 cut(s) 69, 72, 120, 127, 166, 220, 760
BspANI GGCC 3 cut(s) 6, 99, 1030
BspCNI CTCAG 1 cut(s) 796
BspFNI CGCG 2 cut(s) 129, 168
BspLI GGNNCC 6 cut(s) 6, 79, 92, 408, 624, 1029
BspMAI CTGCAG 1 cut(s) 1002
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 3 cut(s) 679, 708, 894
BspT104I TTCGAA 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 222
BsrDI GCAATG 2 cut(s) 536, 558
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 2 cut(s) 92, 761
BssECI CCNNGG 3 cut(s) 7, 94, 842
BssMI GATC 4 cut(s) 671, 700, 886, 979
BssT1I CCWWGG 1 cut(s) 842
Bst2UI CCWGG 4 cut(s) 9, 96, 543, 612
Bst4CI ACNGT 3 cut(s) 529, 876, 906
Bst6I CTCTTC 1 cut(s) 756
BstAUI TGTACA 1 cut(s) 876
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 5 cut(s) 131, 144, 175, 522, 660
BstDEI CTNAG 1 cut(s) 804
BstF5I GGATG 2 cut(s) 123, 1098
BstFNI CGCG 2 cut(s) 129, 168
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 4 cut(s) 674, 703, 889, 982
BstMAI GTCTC 2 cut(s) 495, 638
BstMBI GATC 4 cut(s) 671, 700, 886, 979
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 6 cut(s) 119, 139, 174, 228, 367, 415
BstNI CCWGG 4 cut(s) 9, 96, 543, 612
BstSCI CCNGG 7 cut(s) 7, 94, 308, 541, 610, 633, 1113
BstSFI CTRYAG 1 cut(s) 998
BstSLI GKGCMC 3 cut(s) 8, 337, 913
BstUI CGCG 2 cut(s) 129, 168
BstV1I GCAGC 3 cut(s) 94, 97, 840
BstX2I RGATCY 2 cut(s) 671, 886
BstYI RGATCY 2 cut(s) 671, 886
BsuI GTATCC 2 cut(s) 560, 641
BsuRI GGCC 3 cut(s) 6, 99, 1030
BtsCI GGATG 2 cut(s) 123, 1098
BtsI GCAGTG 2 cut(s) 949, 995
BtsIMutI CAGTG 5 cut(s) 754, 911, 949, 995, 1007
Cac8I GCNNGC 5 cut(s) 131, 144, 175, 522, 660
CaiI CAGNNNCTG 1 cut(s) 674
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 8 cut(s) 4, 5, 163, 202, 256, 533, 1028, 1091
CseI GACGC 2 cut(s) 179, 474
Csp6I GTAC 3 cut(s) 872, 877, 902
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 2 cut(s) 103, 277
CviQI GTAC 3 cut(s) 872, 877, 902
DdeI CTNAG 1 cut(s) 804
DpnI GATC 4 cut(s) 673, 702, 888, 981
DpnII GATC 4 cut(s) 671, 700, 886, 979
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
EciI GGCGGA 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 842
Eco24I GRGCYC 2 cut(s) 8, 411
Eco47I GGWCC 5 cut(s) 163, 202, 256, 533, 1091
Eco57I CTGAAG 3 cut(s) 191, 407, 1031
EcoO109I RGGNCCY 3 cut(s) 202, 256, 1091
EcoRII CCWGG 4 cut(s) 7, 94, 541, 610
EcoT14I CCWWGG 1 cut(s) 842
EcoT38I GRGCYC 2 cut(s) 8, 411
ErhI CCWWGG 1 cut(s) 842
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 2 cut(s) 106, 280
FaqI GGGAC 1 cut(s) 1097
FatI CATG 2 cut(s) 102, 276
Fnu4HI GCNGC 4 cut(s) 70, 108, 111, 854
FokI GGATG 2 cut(s) 110, 1085
FriOI GRGCYC 2 cut(s) 8, 411
Fsp4HI GCNGC 4 cut(s) 70, 108, 111, 854
FspBI CTAG 3 cut(s) 588, 659, 738
GlaI GCGC 1 cut(s) 134
GluI GCNGC 4 cut(s) 70, 108, 111, 854
GsuI CTGGAG 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 3 cut(s) 6, 99, 1030
HapII CCGG 3 cut(s) 309, 635, 1115
HgaI GACGC 2 cut(s) 179, 474
HhaI GCGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 106, 280
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 6 cut(s) 289, 302, 683, 745, 922, 1118
HpaII CCGG 3 cut(s) 309, 635, 1115
HphI GGTGA 2 cut(s) 40, 406
Hpy166II GTNNAC 2 cut(s) 335, 911
Hpy188I TCNGA 4 cut(s) 462, 480, 868, 931
Hpy188III TCNNGA 4 cut(s) 200, 365, 554, 602
Hpy8I GTNNAC 2 cut(s) 335, 911
Hpy99I CGWCG 2 cut(s) 173, 490
HpyAV CCTTC 8 cut(s) 13, 28, 215, 247, 382, 735, 779, 997
HpyCH4III ACNGT 3 cut(s) 529, 876, 906
HpyCH4V TGCA 7 cut(s) 280, 335, 505, 668, 725, 911, 1000
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 139, 174, 228, 367, 415
HpyF3I CTNAG 1 cut(s) 804
Hsp92II CATG 2 cut(s) 106, 280
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 4 cut(s) 671, 700, 886, 979
LmnI GCTCC 4 cut(s) 77, 227, 236, 406
Lsp1109I GCAGC 3 cut(s) 94, 97, 840
MaeI CTAG 3 cut(s) 588, 659, 738
MaeIII GTNAC 2 cut(s) 547, 892
MalI GATC 4 cut(s) 673, 702, 888, 981
MbiI CCGCTC 1 cut(s) 222
MboI GATC 4 cut(s) 671, 700, 886, 979
MboII GAAGA 5 cut(s) 43, 523, 743, 827, 1024
MflI RGATCY 2 cut(s) 671, 886
MhlI GDGCHC 4 cut(s) 8, 337, 411, 913
MluCI AATT 4 cut(s) 466, 932, 1058, 1123
MlyI GAGTC 3 cut(s) 283, 739, 916
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 5 cut(s) 465, 653, 678, 828, 1132
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 309, 635, 1115
MspR9I CCNGG 7 cut(s) 9, 96, 310, 543, 612, 635, 1115
Mva1269I GAATGC 2 cut(s) 177, 789
MvaI CCWGG 4 cut(s) 9, 96, 543, 612
MvnI CGCG 2 cut(s) 129, 168
MwoI GCNNNNNNNGC 6 cut(s) 119, 139, 174, 228, 367, 415
NciI CCSGG 3 cut(s) 310, 635, 1115
NdeII GATC 4 cut(s) 671, 700, 886, 979
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 2 cut(s) 106, 280
NlaIV GGNNCC 6 cut(s) 6, 79, 92, 408, 624, 1029
NspV TTCGAA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 2 cut(s) 177, 789
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 3 cut(s) 302, 683, 1118
PflFI GACNNNGTC 2 cut(s) 152, 925
PflMI CCANNNNNTGG 2 cut(s) 87, 542
PfoI TCCNGGA 3 cut(s) 308, 633, 1113
PkrI GCNGC 4 cut(s) 71, 109, 112, 855
PleI GAGTC 3 cut(s) 283, 739, 916
PpsI GAGTC 3 cut(s) 283, 739, 916
PpuMI RGGWCCY 3 cut(s) 202, 256, 1091
PshBI ATTAAT 1 cut(s) 465
Psp5II RGGWCCY 3 cut(s) 202, 256, 1091
Psp6I CCWGG 4 cut(s) 7, 94, 541, 610
PspGI CCWGG 4 cut(s) 7, 94, 541, 610
PspN4I GGNNCC 6 cut(s) 6, 79, 92, 408, 624, 1029
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 8 cut(s) 4, 5, 163, 202, 256, 533, 1028, 1091
PspPPI RGGWCCY 3 cut(s) 202, 256, 1091
PstI CTGCAG 1 cut(s) 1002
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 2 cut(s) 671, 886
PsyI GACNNNGTC 2 cut(s) 152, 925
RsaI GTAC 3 cut(s) 873, 878, 903
RsaNI GTAC 3 cut(s) 872, 877, 902
SaqAI TTAA 5 cut(s) 465, 653, 678, 828, 1132
SatI GCNGC 4 cut(s) 70, 108, 111, 854
Sau3AI GATC 4 cut(s) 671, 700, 886, 979
Sau96I GGNCC 8 cut(s) 4, 5, 163, 202, 256, 533, 1028, 1091
SchI GAGTC 3 cut(s) 283, 739, 916
ScrFI CCNGG 7 cut(s) 9, 96, 310, 543, 612, 635, 1115
SduI GDGCHC 4 cut(s) 8, 337, 411, 913
SfcI CTRYAG 1 cut(s) 998
SfuI TTCGAA 1 cut(s) 300
SinI GGWCC 5 cut(s) 163, 202, 256, 533, 1091
SmlI CTYRAG 3 cut(s) 137, 365, 552
SmoI CTYRAG 3 cut(s) 137, 365, 552
Sse9I AATT 4 cut(s) 466, 932, 1058, 1123
SsiI CCGC 7 cut(s) 69, 72, 120, 127, 166, 220, 760
SspMI CTAG 3 cut(s) 588, 659, 738
StyD4I CCNGG 7 cut(s) 7, 94, 308, 541, 610, 633, 1113
StyI CCWWGG 1 cut(s) 842
TaaI ACNGT 3 cut(s) 529, 876, 906
TaqI TCGA 4 cut(s) 300, 838, 920, 1052
TaqII GACCGA 1 cut(s) 521
TasI AATT 4 cut(s) 466, 932, 1058, 1123
TatI WGTACW 3 cut(s) 871, 876, 901
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 3 cut(s) 302, 683, 1118
Tru1I TTAA 5 cut(s) 465, 653, 678, 828, 1132
Tru9I TTAA 5 cut(s) 465, 653, 678, 828, 1132
TscAI CASTG 5 cut(s) 761, 911, 949, 1002, 1014
TseI GCWGC 3 cut(s) 107, 110, 853
TspDTI ATGAA 6 cut(s) 52, 464, 530, 813, 969, 1087
TspRI CASTG 5 cut(s) 761, 911, 949, 1002, 1014
Tth111I GACNNNGTC 2 cut(s) 152, 925
Van91I CCANNNNNTGG 2 cut(s) 87, 542
VneI GTGCAC 2 cut(s) 333, 909
VpaK11BI GGWCC 5 cut(s) 163, 202, 256, 533, 1091
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 2 cut(s) 932, 1058
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 3 cut(s) 588, 659, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.