Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Forward (+)

9277530 .. 9279566

Gene Structure 2037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1076200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGGTCACAGTCAAAAGGGTTGGTGAAGAAGGGGATGATGGGGTTGGGAGACATGGGTTTCAACACCGGAGGCGAAGCCATCAATTGGTTCCCCGGCCACATAGCTGCCGCCACATGCGCCATCCGCGACCGCCTCAAGTTCTCCGACTTCGTCATCGAGGTCCGCGACGCTCGTATTCCACTATCCTCCGCCAACCAAGACCTCCAGCCCCAGCTCCGCGCCAAACGCTCCCTCATTGTCCTCAACAAGAAGGACCTCGCCAATCCTAACATCATGCAACAAGATTGCCTTCCCATCAATGCACATAGCAGGAGTTCGGTTACCAAGCTTCTTGAGCTGGTGGAGTATAAGCTGAAGGAAGCGATTTCTAGGGAACCTACTCTGCTTGTTATGGTTGTTGGTGTTCCTAATGTTGGGAAATCAGCTCTAATCAATAATATTCATCGGATTGCATCCTCTTGCCTTCCCGGTAAGAGGCAATCCACATTGAAGAATGACAGTGGTCGTGTTTCTTTCGTAGTTCAGGGGAAGATGAAGCACGCCACGGTGGGTCCATTGCCTGGTGTTGCTCAGGACATTGCTGGATTCAAGCCTAGCATATATGTTCTCAATACTCCAGGTGTGTTGGTTCCAAGTATCCCAGACATAGAGACGGGGTTAGAGCTAGCTCTTGCAGGATCTATTAAGGACTTAGTGGTAGGGGAGGATCGAATTGCTCAATATTTACTTGCAGTTCTAAATTCACGAGGGACACCTTTTTCACTGGAAGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

260

Amino Acids

27.87

Weight (kDa)

9.38

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	87, 563
AccII	CGCG	3 cut(s)	129, 168, 222
AciI	CCGC	6 cut(s)	111, 127, 133, 166, 192, 220
AclWI	GGATC	2 cut(s)	688, 717
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	742
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	4 cut(s)	87, 416, 477, 563
AgsI	TTSAA	3 cut(s)	64, 493, 592
AjnI	CCWGG	2 cut(s)	562, 619
AluBI	AGCT	8 cut(s)	107, 217, 331, 340, 355, 428, 667, 671
AluI	AGCT	8 cut(s)	107, 217, 331, 340, 355, 428, 667, 671
Alw26I	GTCTC	2 cut(s)	45, 647
AlwI	GGATC	2 cut(s)	688, 717
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	742
AspLEI	GCGC	2 cut(s)	122, 224
AspS9I	GGNCC	3 cut(s)	163, 256, 554
AsuC2I	CCSGG	2 cut(s)	96, 471
AsuHPI	GGTGA	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	667
AvaII	GGWCC	3 cut(s)	163, 256, 554
BauI	CACGAG	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	4 cut(s)	34, 89, 131, 305
BciT130I	CCWGG	2 cut(s)	564, 621
BciVI	GTATCC	1 cut(s)	650
BcnI	CCSGG	2 cut(s)	96, 471
BcoDI	GTCTC	2 cut(s)	45, 647
BfaI	CTAG	3 cut(s)	372, 597, 668
BfuI	GTATCC	1 cut(s)	650
BisI	GCNGC	2 cut(s)	108, 111
BlsI	GCNGC	2 cut(s)	109, 112
Bme1390I	CCNGG	4 cut(s)	96, 471, 564, 621
Bme18I	GGWCC	3 cut(s)	163, 256, 554
BmgT120I	GGNCC	3 cut(s)	163, 256, 554
BmiI	GGNNCC	4 cut(s)	92, 378, 555, 633
BmrFI	CCNGG	4 cut(s)	96, 471, 564, 621
BmsI	GCATC	1 cut(s)	464
BmtI	GCTAGC	1 cut(s)	671
BoxI	GACNNNNGTC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	191, 603
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	122, 356
BpuMI	CCSGG	2 cut(s)	96, 471
BsaJI	CCNNGG	2 cut(s)	94, 546
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 416, 477, 563
Bse1I	ACTGG	1 cut(s)	771
Bse3DI	GCAATG	2 cut(s)	557, 579
BseBI	CCWGG	2 cut(s)	564, 621
BseDI	CCNNGG	2 cut(s)	94, 546
BseGI	GGATG	3 cut(s)	42, 123, 455
BseLI	CCNNNNNNNGG	4 cut(s)	87, 416, 477, 563
BseMI	GCAATG	2 cut(s)	557, 579
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	1 cut(s)	771
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	213
Bsh1236I	CGCG	3 cut(s)	129, 168, 222
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	69, 96, 471
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	4 cut(s)	87, 416, 477, 563
BsmAI	GTCTC	2 cut(s)	45, 647
BsmBI	CGTCTC	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	680, 709
BspACI	CCGC	6 cut(s)	111, 127, 133, 166, 192, 220
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	3 cut(s)	129, 168, 222
BspLI	GGNNCC	4 cut(s)	92, 378, 555, 633
BspOI	GCTAGC	1 cut(s)	671
BspPI	GGATC	2 cut(s)	688, 717
BsrDI	GCAATG	2 cut(s)	557, 579
BsrI	ACTGG	1 cut(s)	771
BssECI	CCNNGG	2 cut(s)	94, 546
BssMI	GATC	2 cut(s)	680, 709
BssSI	CACGAG	1 cut(s)	747
Bst2BI	CACGAG	1 cut(s)	747
Bst2UI	CCWGG	2 cut(s)	564, 621
Bst4CI	ACNGT	3 cut(s)	12, 503, 550
BstC8I	GCNNGC	2 cut(s)	543, 669
BstDEI	CTNAG	2 cut(s)	573, 694
BstDSI	CCRYGG	1 cut(s)	546
BstEII	GGTNACC	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	42, 123, 455
BstFNI	CGCG	3 cut(s)	129, 168, 222
BstHHI	GCGC	2 cut(s)	122, 224
BstKTI	GATC	2 cut(s)	683, 712
BstMAI	GTCTC	2 cut(s)	45, 647
BstMBI	GATC	2 cut(s)	680, 709
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 126, 228, 337
BstNI	CCWGG	2 cut(s)	564, 621
BstNSI	RCATGY	1 cut(s)	120
BstPAI	GACNNNNGTC	1 cut(s)	504
BstPI	GGTNACC	1 cut(s)	322
BstSCI	CCNGG	4 cut(s)	94, 469, 562, 619
BstUI	CGCG	3 cut(s)	129, 168, 222
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	42, 123, 455
BtsIMutI	CAGTG	2 cut(s)	508, 764
Cac8I	GCNNGC	2 cut(s)	543, 669
CfoI	GCGC	2 cut(s)	122, 224
Cfr13I	GGNCC	3 cut(s)	163, 256, 554
CseI	GACGC	1 cut(s)	179
CviAII	CATG	3 cut(s)	55, 117, 277
DdeI	CTNAG	2 cut(s)	573, 694
DpnI	GATC	2 cut(s)	682, 711
DpnII	GATC	2 cut(s)	680, 709
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	181
Eco47I	GGWCC	3 cut(s)	163, 256, 554
Eco57I	CTGAAG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	256
EcoO65I	GGTNACC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	562, 619
Esp3I	CGTCTC	1 cut(s)	647
FaeI	CATG	3 cut(s)	58, 120, 280
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	3 cut(s)	54, 116, 276
Fnu4HI	GCNGC	2 cut(s)	108, 111
FokI	GGATG	3 cut(s)	49, 110, 442
Fsp4HI	GCNGC	2 cut(s)	108, 111
FspBI	CTAG	3 cut(s)	372, 597, 668
GlaI	GCGC	2 cut(s)	121, 223
GluI	GCNGC	2 cut(s)	108, 111
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	2 cut(s)	191, 603
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	3 cut(s)	69, 96, 471
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	2 cut(s)	122, 224
Hin1II	CATG	3 cut(s)	58, 120, 280
Hin6I	GCGC	2 cut(s)	120, 222
HinP1I	GCGC	2 cut(s)	120, 222
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	588
HpaII	CCGG	3 cut(s)	69, 96, 471
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	148, 450
Hpy188III	TCNNGA	3 cut(s)	335, 575, 747
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	5 cut(s)	25, 247, 302, 352, 476
HpyCH4III	ACNGT	3 cut(s)	12, 503, 550
HpyCH4V	TGCA	5 cut(s)	280, 305, 455, 677, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 126, 228, 337
HpyF3I	CTNAG	2 cut(s)	573, 694
Hsp92II	CATG	3 cut(s)	58, 120, 280
HspAI	GCGC	2 cut(s)	120, 222
Kzo9I	GATC	2 cut(s)	680, 709
LmnI	GCTCC	2 cut(s)	222, 236
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	3 cut(s)	372, 597, 668
MaeIII	GTNAC	2 cut(s)	6, 322
MalI	GATC	2 cut(s)	682, 711
MboI	GATC	2 cut(s)	680, 709
MboII	GAAGA	3 cut(s)	40, 505, 544
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	680
MluCI	AATT	3 cut(s)	85, 714, 742
MmeI	TCCRAC	1 cut(s)	171
MseI	TTAA	1 cut(s)	687
MspI	CCGG	3 cut(s)	69, 96, 471
MspR9I	CCNGG	4 cut(s)	96, 471, 564, 621
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	564, 621
MvnI	CGCG	3 cut(s)	129, 168, 222
MwoI	GCNNNNNNNGC	4 cut(s)	119, 126, 228, 337
NciI	CCSGG	2 cut(s)	96, 471
NdeII	GATC	2 cut(s)	680, 709
NheI	GCTAGC	1 cut(s)	667
NlaIII	CATG	3 cut(s)	58, 120, 280
NlaIV	GGNNCC	4 cut(s)	92, 378, 555, 633
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	588
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	2 cut(s)	87, 563
PkrI	GCNGC	2 cut(s)	109, 112
PpuMI	RGGWCCY	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	562, 619
PspEI	GGTNACC	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	562, 619
PspN4I	GGNNCC	4 cut(s)	92, 378, 555, 633
PspPI	GGNCC	3 cut(s)	163, 256, 554
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	2 cut(s)	108, 111
Sau3AI	GATC	2 cut(s)	680, 709
Sau96I	GGNCC	3 cut(s)	163, 256, 554
ScrFI	CCNGG	4 cut(s)	96, 471, 564, 621
SfaNI	GCATC	1 cut(s)	464
SinI	GGWCC	3 cut(s)	163, 256, 554
SmlI	CTYRAG	2 cut(s)	137, 335
SmoI	CTYRAG	2 cut(s)	137, 335
Sse9I	AATT	3 cut(s)	85, 714, 742
SsiI	CCGC	6 cut(s)	111, 127, 133, 166, 192, 220
SspI	AATATT	2 cut(s)	442, 725
SspMI	CTAG	3 cut(s)	372, 597, 668
StyD4I	CCNGG	4 cut(s)	94, 469, 562, 619
TaaI	ACNGT	3 cut(s)	12, 503, 550
TaqI	TCGA	2 cut(s)	159, 712
TasI	AATT	3 cut(s)	85, 714, 742
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	2 cut(s)	508, 771
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	434, 551
TspRI	CASTG	2 cut(s)	508, 771
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	2 cut(s)	87, 563
VpaK11BI	GGWCC	3 cut(s)	163, 256, 554
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	1 cut(s)	120
XspI	CTAG	3 cut(s)	372, 597, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.