Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Forward (+)

20383076 .. 20396379

Gene Structure 13304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGGTATTGAGGAAAGGAATCTCATATGATCCGGAGTCTTCGTTATTGGGATCTTCTGTATCATCACAACGACAGACTCGGTTTTTTGAATCCTCCTGGAAAAATAGCCTGCCCATAAGTGCACATAGCAAGAGTTTTGTTTCCAAGCCACGTGGCCCTTATCTCACCCTTGGTTCTCTTTGTCGCAACACAGACCAAGTGAGGACTAATGCTCAAATTGTGGAAGGAGATCCAGGTAAGGTAACTTGCAAGAGTGTTGGTGGTCTGAAAACACATAAAGACGAGCCCCAAGGAAATCGTAGACAAGCCATCATGGAAAAAGAATGGACCAAATATGAAAGCCTCATAAAAGTATCTGTTCACCGCTTTCTACCACCACGTTCTCTCAATGAAAGAGCAAGTGTTTCTCCTGCTCCAACATTACAGAACTGTGATCTCCAAAAGTTGTCCTTTGAGATTGCCTTCATCAACATTGGGAACAGATACGGTGATACGAACAGCCCCCGCATCCAAAAAGTTAAAATTGAAAATGGAAGAATTCGTCGGGCTACCAACAAAGAAACAAATAAGATGTTAAGTAATCAAGAATTTTTAGTAGTGAAGAGACAAGTATATGGAAGGTATTCATACTTGATGCGTGCCGAAATTTATCTTCTCGCAATAAGCATGGAGTCATCAAGCTTCGCCGCTTGGGCTCGGGTTCCTTCGGGAGTGGTGGAGGAGCTTCCTCAAATGCTCCTCCTAACATACAAGCAAAAGAAAAAAGGATTACCAGGAAAGGCATTGAGAGTGCCAACCCCGCATGGCACGAGCTGCACCGCTGCAGCATCCCTTAGTGTCCGCCCGATCCACAAGTTTGACTACCATCGACCGCATTATAAATCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.54

Weight (kDa)

10.12

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	304
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	7 cut(s)	367, 508, 690, 803, 822, 844, 875
AclWI	GGATC	4 cut(s)	26, 61, 227, 844
AcsI	RAATTY	3 cut(s)	540, 590, 648
AcvI	CACGTG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	92, 530
AjnI	CCWGG	3 cut(s)	98, 235, 775
AluBI	AGCT	3 cut(s)	684, 727, 816
AluI	AGCT	3 cut(s)	684, 727, 816
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	601
Alw44I	GTGCAC	1 cut(s)	123
AlwI	GGATC	4 cut(s)	26, 61, 227, 844
Ama87I	CYCGRG	1 cut(s)	699
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	816, 824, 827
ApoI	RAATTY	3 cut(s)	540, 590, 648
Asp700I	GAANNNNTTC	1 cut(s)	625
AspS9I	GGNCC	2 cut(s)	158, 330
AsuHPI	GGTGA	3 cut(s)	160, 356, 503
AvaI	CYCGRG	1 cut(s)	699
AvaII	GGWCC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	291, 700
BauI	CACGAG	1 cut(s)	811
BbrPI	CACGTG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	803, 811, 839
BccI	CCATC	2 cut(s)	320, 876
BciT130I	CCWGG	3 cut(s)	100, 237, 777
BcoDI	GTCTC	1 cut(s)	601
BfmI	CTRYAG	1 cut(s)	825
BglI	GCCNNNNNGGC	1 cut(s)	695
BisI	GCNGC	4 cut(s)	690, 817, 825, 828
BlsI	GCNGC	4 cut(s)	691, 818, 826, 829
Bme1390I	CCNGG	3 cut(s)	100, 237, 777
Bme18I	GGWCC	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	699
BmgT120I	GGNCC	2 cut(s)	158, 330
BmiI	GGNNCC	1 cut(s)	705
BmrFI	CCNGG	3 cut(s)	100, 237, 777
BmsI	GCATC	3 cut(s)	519, 627, 839
BpiI	GAAGAC	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	172, 292
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	3 cut(s)	100, 237, 777
BseDI	CCNNGG	2 cut(s)	172, 292
BseGI	GGATG	2 cut(s)	510, 830
BseRI	GAGGAG	2 cut(s)	731, 737
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	803, 811, 839
BsgI	GTGCAG	1 cut(s)	802
Bsh1285I	CGRYCG	1 cut(s)	875
BshFI	GGCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	699
Bsp1286I	GDGCHC	3 cut(s)	127, 291, 700
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	31, 53, 232, 436, 849
BspACI	CCGC	7 cut(s)	367, 508, 690, 803, 822, 844, 875
BspANI	GGCC	1 cut(s)	159
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	705
BspMAI	CTGCAG	1 cut(s)	829
BspPI	GGATC	4 cut(s)	26, 61, 227, 844
BssECI	CCNNGG	2 cut(s)	172, 292
BssMI	GATC	5 cut(s)	31, 53, 232, 436, 849
BssSI	CACGAG	1 cut(s)	811
BssT1I	CCWWGG	2 cut(s)	172, 292
Bst2BI	CACGAG	1 cut(s)	811
Bst2UI	CCWGG	3 cut(s)	100, 237, 777
Bst4CI	ACNGT	2 cut(s)	434, 491
Bst6I	CTCTTC	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	113, 642
BstDEI	CTNAG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	510, 830
BstKTI	GATC	5 cut(s)	34, 56, 235, 439, 852
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	5 cut(s)	31, 53, 232, 436, 849
BstMCI	CGRYCG	1 cut(s)	875
BstMWI	GCNNNNNNNGC	3 cut(s)	695, 802, 816
BstNI	CCWGG	3 cut(s)	100, 237, 777
BstSCI	CCNGG	3 cut(s)	98, 235, 775
BstSFI	CTRYAG	1 cut(s)	825
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	803, 811, 839
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	53, 232
BstYI	RGATCY	2 cut(s)	53, 232
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	510, 830
Cac8I	GCNNGC	2 cut(s)	113, 642
Cfr13I	GGNCC	2 cut(s)	158, 330
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	3 cut(s)	316, 670, 806
DdeI	CTNAG	1 cut(s)	836
DpnI	GATC	5 cut(s)	33, 55, 234, 438, 851
DpnII	GATC	5 cut(s)	31, 53, 232, 436, 849
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	1 cut(s)	833
Eco130I	CCWWGG	2 cut(s)	172, 292
Eco24I	GRGCYC	2 cut(s)	291, 700
Eco47I	GGWCC	1 cut(s)	330
Eco72I	CACGTG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	699
EcoRI	GAATTC	1 cut(s)	540
EcoRII	CCWGG	3 cut(s)	98, 235, 775
EcoT14I	CCWWGG	2 cut(s)	172, 292
EcoT38I	GRGCYC	2 cut(s)	291, 700
ErhI	CCWWGG	2 cut(s)	172, 292
FaeI	CATG	3 cut(s)	319, 673, 809
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	3 cut(s)	315, 669, 805
FauI	CCCGC	2 cut(s)	515, 810
FauNDI	CATATG	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	4 cut(s)	690, 817, 825, 828
FokI	GGATG	2 cut(s)	497, 817
FriOI	GRGCYC	2 cut(s)	291, 700
Fsp4HI	GCNGC	4 cut(s)	690, 817, 825, 828
GluI	GCNGC	4 cut(s)	690, 817, 825, 828
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	319, 673, 809
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	5 cut(s)	21, 38, 79, 92, 674
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	160, 356, 503
Hpy166II	GTNNAC	3 cut(s)	125, 305, 364
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	35, 587, 711
Hpy8I	GTNNAC	3 cut(s)	125, 305, 364
Hpy99I	CGWCG	1 cut(s)	549
HpyAV	CCTTC	4 cut(s)	221, 475, 615, 717
HpyCH4III	ACNGT	2 cut(s)	434, 491
HpyCH4IV	ACGT	2 cut(s)	154, 382
HpyCH4V	TGCA	4 cut(s)	125, 252, 819, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	695, 802, 816
HpyF3I	CTNAG	1 cut(s)	836
HpySE526I	ACGT	2 cut(s)	154, 382
Hsp92II	CATG	3 cut(s)	319, 673, 809
Kpn2I	TCCGGA	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	31, 53, 232, 436, 849
LmnI	GCTCC	3 cut(s)	421, 724, 744
LpnPI	CCDG	9 cut(s)	48, 85, 112, 125, 222, 249, 426, 762, 789
Lsp1109I	GCAGC	3 cut(s)	803, 811, 839
LweI	GCATC	3 cut(s)	519, 627, 839
MaeII	ACGT	2 cut(s)	154, 382
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	33, 55, 234, 438, 851
MboI	GATC	5 cut(s)	31, 53, 232, 436, 849
MboII	GAAGA	5 cut(s)	33, 48, 549, 616, 647
MflI	RGATCY	2 cut(s)	53, 232
MhlI	GDGCHC	3 cut(s)	127, 291, 700
MluCI	AATT	5 cut(s)	219, 525, 540, 590, 648
MlyI	GAGTC	3 cut(s)	47, 73, 683
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	7 cut(s)	6, 106, 198, 356, 715, 741, 752
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	2 cut(s)	522, 578
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	3 cut(s)	100, 237, 777
MvaI	CCWGG	3 cut(s)	100, 237, 777
MwoI	GCNNNNNNNGC	3 cut(s)	695, 802, 816
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	5 cut(s)	31, 53, 232, 436, 849
NlaIII	CATG	3 cut(s)	319, 673, 809
NlaIV	GGNNCC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	21, 92
PfoI	TCCNGGA	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	691, 818, 826, 829
PleI	GAGTC	3 cut(s)	46, 73, 682
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
PpsI	GAGTC	3 cut(s)	46, 73, 682
Ppu21I	YACGTR	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	882
Psp6I	CCWGG	3 cut(s)	98, 235, 775
PspCI	CACGTG	1 cut(s)	155
PspGI	CCWGG	3 cut(s)	98, 235, 775
PspN4I	GGNNCC	1 cut(s)	705
PspPI	GGNCC	2 cut(s)	158, 330
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	2 cut(s)	53, 232
SaqAI	TTAA	2 cut(s)	522, 578
SatI	GCNGC	4 cut(s)	690, 817, 825, 828
Sau3AI	GATC	5 cut(s)	31, 53, 232, 436, 849
Sau96I	GGNCC	2 cut(s)	158, 330
SchI	GAGTC	3 cut(s)	47, 73, 683
ScrFI	CCNGG	3 cut(s)	100, 237, 777
SduI	GDGCHC	3 cut(s)	127, 291, 700
SetI	ASST	9 cut(s)	9, 157, 241, 246, 385, 626, 686, 729, 818
SfaNI	GCATC	3 cut(s)	519, 627, 839
SfcI	CTRYAG	1 cut(s)	825
SinI	GGWCC	1 cut(s)	330
Sse9I	AATT	5 cut(s)	219, 525, 540, 590, 648
SsiI	CCGC	7 cut(s)	367, 508, 690, 803, 822, 844, 875
StyD4I	CCNGG	3 cut(s)	98, 235, 775
StyI	CCWWGG	2 cut(s)	172, 292
TaaI	ACNGT	2 cut(s)	434, 491
TaiI	ACGT	2 cut(s)	157, 385
TaqI	TCGA	1 cut(s)	871
TasI	AATT	5 cut(s)	219, 525, 540, 590, 648
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	2 cut(s)	21, 92
Tru1I	TTAA	2 cut(s)	522, 578
Tru9I	TTAA	2 cut(s)	522, 578
TseI	GCWGC	3 cut(s)	816, 824, 827
TspDTI	ATGAA	5 cut(s)	17, 354, 408, 457, 618
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	3 cut(s)	540, 590, 648
XmiI	GTMKAC	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.