Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Reverse (-)

5624733 .. 5628311

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGACTGTGGAAAGATTGTTGTTAGGGCTTCAATTTCTGCAGCTACGGACTCGGTTTTTCGAATCCTCCGGGAAAAATAGCCTGCCCATAAGTGCACATAGCAAGAGTTCTGTTTCCAAGATTGGTGTAGTTGCAACATACCATAATATCAACCACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

53

Amino Acids

5.93

Weight (kDa)

10.43

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	97
Alw44I	GTGCAC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	83
CviJI	RGCY	3 cut(s)	28, 43, 81
CviKI_1	RGCY	3 cut(s)	28, 43, 81
FaiI	YATR	5 cut(s)	89, 99, 139, 144, 160
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	41
HapII	CCGG	1 cut(s)	69
HinfI	GANTC	2 cut(s)	49, 62
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	40, 95, 134
LpnPI	CCDG	2 cut(s)	82, 95
Lsp1109I	GCAGC	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	76
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	70
NciI	CCSGG	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	62
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	42
SatI	GCNGC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	60
SgeI	CNNG	6 cut(s)	63, 81, 82, 94, 115, 130
Sse9I	AATT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	61
VneI	GTGCAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.