Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Forward (+)

35938697 .. 35943345

Gene Structure 4649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACAATTTTTCGAATTTCTCTGTTAGTACAGGGGAAGATGAAGCGAGCTACGGTTGGTCCATTGCCTGGTGTTACTCAAGACATTGCTGGATACAAGATTGCTCATCAGCCTAGCATATATGTTCTCGACACTCCTGGTGTATTGGTTCCAAGTATTCCGGACATAGAGACAGGGTTAAAGCTAGCTCTTGCAGGATCTGTTAAAGATTCAGTGGTGGGGGAGGATCGTATTGCTCAATACTTACTTGCAGTTCTAAATACTAGAAGGACTCCTCTTCACTGGCGGAACTCACATAATAGCAGAACGGAAGGCATTCAATATGAAGCTGAGGAAAAAGTTGACTATAGTCTTAAAAATCTTCGACCAAGGAGGAAGCTGCCAAATAAGTCTGATGTACTGTACATTGAGGATCTTGTAACGAAAGTACAGTGTGCACTCTATTCGACTCTGTCAGAATTTGATGGCAGTGTAGATGATGAAGCTGACTTGGAGGTGCTTATAGATCAGCAGTTTGAAGCACTGCAGAAGGCACTGAAGATAGCTAACAAGGGGCCAGAAGCTCGGTTGATGGTATCGAAAAAATTTCTTACATTATTTAGAACGGGGAAGTTAGGTCCTTTCATCCTTGATGATGTCCCGGATTCTAATTTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

219

Amino Acids

24.37

Weight (kDa)

6.84

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	3 cut(s)	205, 234, 420
AcsI	RAATTY	3 cut(s)	15, 458, 584
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	4 cut(s)	30, 399, 404, 429
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	320, 518
AjnI	CCWGG	2 cut(s)	67, 136
AluBI	AGCT	8 cut(s)	50, 184, 188, 329, 379, 485, 545, 563
AluI	AGCT	8 cut(s)	50, 184, 188, 329, 379, 485, 545, 563
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	435
AlwI	GGATC	3 cut(s)	205, 234, 420
AlwNI	CAGNNNCTG	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	3 cut(s)	15, 458, 584
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	59, 554, 617
AsuC2I	CCSGG	1 cut(s)	641
AsuII	TTCGAA	1 cut(s)	13
AsuNHI	GCTAGC	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	59, 617
BaeGI	GKGCMC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	439
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	2 cut(s)	458, 565
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	2 cut(s)	69, 138
BciVI	GTATCC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	641
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	3 cut(s)	114, 185, 264
BfmI	CTRYAG	2 cut(s)	346, 524
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	3 cut(s)	69, 138, 641
Bme18I	GGWCC	2 cut(s)	59, 617
BmgT120I	GGNCC	3 cut(s)	59, 554, 617
BmiI	GGNNCC	2 cut(s)	150, 555
BmrFI	CCNGG	3 cut(s)	69, 138, 641
BmtI	GCTAGC	1 cut(s)	188
BoxI	GACNNNNGTC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	62, 84
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	69, 138
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	2 cut(s)	62, 84
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	366
BshFI	GGCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	2 cut(s)	161, 641
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	556
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp13I	TCCGGA	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	4 cut(s)	197, 226, 412, 505
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	150, 555
BspMAI	CTGCAG	1 cut(s)	528
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	3 cut(s)	205, 234, 420
BspT104I	TTCGAA	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	62, 84
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	4 cut(s)	197, 226, 412, 505
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	2 cut(s)	69, 138
Bst4CI	ACNGT	3 cut(s)	55, 402, 432
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	48, 186
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	624
BstKTI	GATC	4 cut(s)	200, 229, 415, 508
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	4 cut(s)	197, 226, 412, 505
BstNI	CCWGG	2 cut(s)	69, 138
BstPAI	GACNNNNGTC	1 cut(s)	348
BstSCI	CCNGG	3 cut(s)	67, 136, 639
BstSFI	CTRYAG	2 cut(s)	346, 524
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	366
BstX2I	RGATCY	2 cut(s)	197, 412
BstYI	RGATCY	2 cut(s)	197, 412
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	624
BtsI	GCAGTG	2 cut(s)	475, 521
BtsIMutI	CAGTG	6 cut(s)	219, 280, 437, 475, 521, 533
Cac8I	GCNNGC	2 cut(s)	48, 186
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	59, 554, 617
Csp6I	GTAC	4 cut(s)	29, 398, 403, 428
CviQI	GTAC	4 cut(s)	29, 398, 403, 428
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	4 cut(s)	199, 228, 414, 507
DpnII	GATC	4 cut(s)	197, 226, 412, 505
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	59, 617
Eco57I	CTGAAG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	67, 136
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaiI	YATR	8 cut(s)	119, 121, 123, 167, 297, 324, 348, 503
FaqI	GGGAC	1 cut(s)	623
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	3 cut(s)	114, 185, 264
GluI	GCNGC	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	2 cut(s)	161, 641
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	209, 271, 448, 644
HpaII	CCGG	2 cut(s)	161, 641
Hpy166II	GTNNAC	2 cut(s)	343, 437
Hpy188I	TCNGA	2 cut(s)	394, 457
Hpy188III	TCNNGA	3 cut(s)	80, 128, 161
Hpy8I	GTNNAC	2 cut(s)	343, 437
HpyAV	CCTTC	3 cut(s)	261, 305, 523
HpyCH4III	ACNGT	3 cut(s)	55, 402, 432
HpyCH4V	TGCA	4 cut(s)	194, 251, 437, 526
HpyF3I	CTNAG	1 cut(s)	330
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	197, 226, 412, 505
Lsp1109I	GCAGC	1 cut(s)	366
MaeI	CTAG	3 cut(s)	114, 185, 264
MaeIII	GTNAC	2 cut(s)	73, 418
MalI	GATC	4 cut(s)	199, 228, 414, 507
MboI	GATC	4 cut(s)	197, 226, 412, 505
MboII	GAAGA	4 cut(s)	49, 269, 353, 550
MflI	RGATCY	2 cut(s)	197, 412
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	5 cut(s)	6, 15, 458, 584, 649
MlyI	GAGTC	2 cut(s)	265, 442
MnlI	CCTC	6 cut(s)	217, 285, 325, 366, 403, 487
MroI	TCCGGA	1 cut(s)	160
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	4 cut(s)	179, 204, 354, 658
MspI	CCGG	2 cut(s)	161, 641
MspR9I	CCNGG	3 cut(s)	69, 138, 641
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	69, 138
NciI	CCSGG	1 cut(s)	641
NdeII	GATC	4 cut(s)	197, 226, 412, 505
NheI	GCTAGC	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	150, 555
NspV	TTCGAA	1 cut(s)	13
PctI	GAATGC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	209, 644
PflFI	GACNNNGTC	1 cut(s)	451
PflMI	CCANNNNNTGG	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	2 cut(s)	265, 442
PpsI	GAGTC	2 cut(s)	265, 442
PpuMI	RGGWCCY	1 cut(s)	617
PshAI	GACNNNNGTC	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	67, 136
PspGI	CCWGG	2 cut(s)	67, 136
PspN4I	GGNNCC	2 cut(s)	150, 555
PspPI	GGNCC	3 cut(s)	59, 554, 617
PspPPI	RGGWCCY	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	197, 412
PsyI	GACNNNGTC	1 cut(s)	451
RsaI	GTAC	4 cut(s)	30, 399, 404, 429
RsaNI	GTAC	4 cut(s)	29, 398, 403, 428
SaqAI	TTAA	4 cut(s)	179, 204, 354, 658
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	4 cut(s)	197, 226, 412, 505
Sau96I	GGNCC	3 cut(s)	59, 554, 617
SchI	GAGTC	2 cut(s)	265, 442
ScrFI	CCNGG	3 cut(s)	69, 138, 641
SduI	GDGCHC	1 cut(s)	439
SfcI	CTRYAG	2 cut(s)	346, 524
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	2 cut(s)	59, 617
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	5 cut(s)	6, 15, 458, 584, 649
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	3 cut(s)	114, 185, 264
StyD4I	CCNGG	3 cut(s)	67, 136, 639
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	55, 402, 432
TaqI	TCGA	5 cut(s)	13, 129, 364, 446, 578
TasI	AATT	5 cut(s)	6, 15, 458, 584, 649
TatI	WGTACW	4 cut(s)	28, 397, 402, 427
TfiI	GAWTC	2 cut(s)	209, 644
Tru1I	TTAA	4 cut(s)	179, 204, 354, 658
Tru9I	TTAA	4 cut(s)	179, 204, 354, 658
TscAI	CASTG	6 cut(s)	219, 287, 437, 475, 528, 540
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	56, 339, 495, 613
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	6 cut(s)	219, 287, 437, 475, 528, 540
Tth111I	GACNNNGTC	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	59, 617
XapI	RAATTY	3 cut(s)	15, 458, 584
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	3 cut(s)	114, 185, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.