Rh3AG251500

Mitochondrial

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
27084333 .. 27090162
5830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG251500.1

Sequence Viewer

Length: 960 bp
ATGGGCCCAGGAGGATTGAAGGAAGTGGTGAAGAAGTTGGCAGAGATGGAGTTCATCAGCGGCGGCGGAGCCATCAACTGGTTCCCAGGCCACATGGCTGCTGCCACCACCGCCATCCGCGAGCGCCTCAAGCTCGCCGACCTCGTCATTGAGGTCCGCGACGCTCGCATTCCTTTGTCCTCTGCCAATCAGGACCTTCAGCCCCAACTCCGCTCCAAACGCTCCCTTGTTGCCCTCAACAAGAAGGACCTTGCCAACCCCAATATCATGCACAGATGGACTCGGTTTTTCGAATCGTCCGGGAAAGATTGCCTACCCATTAGTGCACATAGCAAGAGTTCTGTTTCCAAGCTTCTTGAGCTGGTGGAGTATAAACTGAAGGAGGTGATTTCAAGGGAGCCCACCCTGCTTGTTATGGTCGTTGGCGTTCCTAATGTTGGCAAATCAGCTCTGATTAATTCTATTCATCAGATTGCGTCGTCTCGCTTTCCTGTGCAGGGGAAGATGAAGCGAGCTACGGTCGGTCCGTTGCCTGGTGTTACTCAAGACATTGCTGGATACAAGATTGCTCATCAGCCTAGCATATATGTTCTTGACACTCCAGGTGTATTGGTTCCAAGTATCCCGGACATAGAGACAGGGTTAAAGCTAGCTCTTGCAGGATCTGTTAAAGATTCAGTGGTGGGGGAGGATCGTATTGCTCAATACTTACTTGCAGTTCTAAATACTAGAAGGACTCCTCTTCACTGGCGGAACTCACATAATAGCAGAACGGAAGGCGTTCAATATGAAGCTGAGGAAAAAGTTGACTATAGTCTTAAAAATCTTCGACCAAGGAGGAAGCTGCCAAATAAGTCTGATGTACTGTACATTGAGGTAACTGATGTTCTTGTATTCTTCTTTTTATGCACAATGGTATCCCAGCCTTTAGTGCAATGTGGGACTGATTCAAACTTCTGA

Protein Analysis

319

Amino Acids

35.22

Weight (kDa)

9.48

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 138 - 211 2.8e-12 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 2 cut(s) 120, 159
AciI CCGC 8 cut(s) 60, 63, 66, 111, 118, 157, 211, 751
AclWI GGATC 2 cut(s) 670, 699
AcuI CTGAAG 2 cut(s) 182, 398
AfaI GTAC 2 cut(s) 864, 869
AfiI CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
AgsI TTSAA 4 cut(s) 19, 393, 785, 951
AjnI CCWGG 4 cut(s) 7, 85, 532, 601
AluBI AGCT 9 cut(s) 133, 352, 361, 449, 515, 649, 653, 794, 844
AluI AGCT 9 cut(s) 133, 352, 361, 449, 515, 649, 653, 794, 844
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 2 cut(s) 486, 629
Alw44I GTGCAC 1 cut(s) 324
AlwI GGATC 2 cut(s) 670, 699
AlwNI CAGNNNCTG 1 cut(s) 665
AoxI GGCC 2 cut(s) 4, 88
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 324
ApeKI GCWGC 3 cut(s) 98, 101, 844
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 6 cut(s) 4, 5, 154, 193, 247, 524
AsuC2I CCSGG 2 cut(s) 301, 626
AsuHPI GGTGA 2 cut(s) 40, 397
AsuII TTCGAA 1 cut(s) 291
AsuNHI GCTAGC 1 cut(s) 649
AvaII GGWCC 4 cut(s) 154, 193, 247, 524
BaeGI GKGCMC 2 cut(s) 8, 328
BaeI ACNNNNGTAYC 2 cut(s) 900, 933
BanII GRGCYC 2 cut(s) 8, 402
Bbv12I GWGCWC 1 cut(s) 328
BbvCI CCTCAGC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 85, 88, 831
BccI CCATC 4 cut(s) 40, 80, 122, 270
BciT130I CCWGG 4 cut(s) 9, 87, 534, 603
BciVI GTATCC 3 cut(s) 551, 632, 928
BcnI CCSGG 2 cut(s) 301, 626
BcoDI GTCTC 2 cut(s) 486, 629
BfaI CTAG 3 cut(s) 579, 650, 729
BfmI CTRYAG 1 cut(s) 811
BfoI RGCGCY 1 cut(s) 127
BfuI GTATCC 3 cut(s) 551, 632, 928
BisI GCNGC 5 cut(s) 61, 64, 99, 102, 845
BlsI GCNGC 5 cut(s) 62, 65, 100, 103, 846
Bme1390I CCNGG 6 cut(s) 9, 87, 301, 534, 603, 626
Bme18I GGWCC 4 cut(s) 154, 193, 247, 524
BmgT120I GGNCC 6 cut(s) 4, 5, 154, 193, 247, 524
BmiI GGNNCC 5 cut(s) 6, 70, 83, 399, 615
BmrFI CCNGG 6 cut(s) 9, 87, 301, 534, 603, 626
BmtI GCTAGC 1 cut(s) 653
BoxI GACNNNNGTC 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 3 cut(s) 113, 377, 528
BpuMI CCSGG 2 cut(s) 301, 626
BsaJI CCNNGG 3 cut(s) 7, 85, 833
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
Bse1I ACTGG 2 cut(s) 83, 752
Bse3DI GCAATG 2 cut(s) 549, 941
BseBI CCWGG 4 cut(s) 9, 87, 534, 603
BseDI CCNNGG 3 cut(s) 7, 85, 833
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
BseMI GCAATG 2 cut(s) 549, 941
BseMII CTCAG 1 cut(s) 786
BseNI ACTGG 2 cut(s) 83, 752
BseRI GAGGAG 1 cut(s) 729
BseSI GKGCMC 2 cut(s) 8, 328
BseXI GCAGC 3 cut(s) 85, 88, 831
BseYI CCCAGC 1 cut(s) 921
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 2 cut(s) 120, 159
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 2 cut(s) 6, 90
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 2 cut(s) 300, 626
BslFI GGGAC 1 cut(s) 955
BslI CCNNNNNNNGG 4 cut(s) 78, 437, 497, 533
BsmAI GTCTC 2 cut(s) 486, 629
BsmBI CGTCTC 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 955
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 2 cut(s) 6, 90
Bsp119I TTCGAA 1 cut(s) 291
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 328, 402
Bsp1407I TGTACA 1 cut(s) 867
Bsp143I GATC 2 cut(s) 662, 691
BspACI CCGC 8 cut(s) 60, 63, 66, 111, 118, 157, 211, 751
BspANI GGCC 2 cut(s) 6, 90
BspCNI CTCAG 1 cut(s) 787
BspFNI CGCG 2 cut(s) 120, 159
BspLI GGNNCC 5 cut(s) 6, 70, 83, 399, 615
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 2 cut(s) 670, 699
BspT104I TTCGAA 1 cut(s) 291
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 549, 941
BsrGI TGTACA 1 cut(s) 867
BsrI ACTGG 2 cut(s) 83, 752
BssECI CCNNGG 3 cut(s) 7, 85, 833
BssMI GATC 2 cut(s) 662, 691
BssT1I CCWWGG 1 cut(s) 833
Bst2UI CCWGG 4 cut(s) 9, 87, 534, 603
Bst4CI ACNGT 2 cut(s) 520, 867
Bst6I CTCTTC 1 cut(s) 747
BstAUI TGTACA 1 cut(s) 867
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 5 cut(s) 122, 135, 166, 513, 651
BstDEI CTNAG 1 cut(s) 795
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 2 cut(s) 120, 159
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 665, 694
BstMAI GTCTC 2 cut(s) 486, 629
BstMBI GATC 2 cut(s) 662, 691
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 7 cut(s) 110, 130, 165, 219, 358, 406, 931
BstNI CCWGG 4 cut(s) 9, 87, 534, 603
BstPAI GACNNNNGTC 1 cut(s) 813
BstSCI CCNGG 6 cut(s) 7, 85, 299, 532, 601, 624
BstSFI CTRYAG 1 cut(s) 811
BstSLI GKGCMC 2 cut(s) 8, 328
BstUI CGCG 2 cut(s) 120, 159
BstV1I GCAGC 3 cut(s) 85, 88, 831
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BsuI GTATCC 3 cut(s) 551, 632, 928
BsuRI GGCC 2 cut(s) 6, 90
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 684, 745
Cac8I GCNNGC 5 cut(s) 122, 135, 166, 513, 651
CaiI CAGNNNCTG 1 cut(s) 665
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 6 cut(s) 4, 5, 154, 193, 247, 524
CpoI CGGWCCG 1 cut(s) 524
CseI GACGC 2 cut(s) 170, 465
Csp6I GTAC 2 cut(s) 863, 868
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CspI CGGWCCG 1 cut(s) 524
CviAII CATG 2 cut(s) 94, 268
CviQI GTAC 2 cut(s) 863, 868
DdeI CTNAG 1 cut(s) 795
DpnI GATC 2 cut(s) 664, 693
DpnII GATC 2 cut(s) 662, 691
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EciI GGCGGA 2 cut(s) 81, 766
Eco130I CCWWGG 1 cut(s) 833
Eco24I GRGCYC 2 cut(s) 8, 402
Eco47I GGWCC 4 cut(s) 154, 193, 247, 524
Eco57I CTGAAG 2 cut(s) 182, 398
EcoO109I RGGNCCY 2 cut(s) 193, 247
EcoRII CCWGG 4 cut(s) 7, 85, 532, 601
EcoT14I CCWWGG 1 cut(s) 833
EcoT38I GRGCYC 2 cut(s) 8, 402
ErhI CCWWGG 1 cut(s) 833
Esp3I CGTCTC 1 cut(s) 486
FaeI CATG 2 cut(s) 97, 271
FaqI GGGAC 1 cut(s) 955
FatI CATG 2 cut(s) 93, 267
Fnu4HI GCNGC 5 cut(s) 61, 64, 99, 102, 845
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 2 cut(s) 8, 402
Fsp4HI GCNGC 5 cut(s) 61, 64, 99, 102, 845
FspBI CTAG 3 cut(s) 579, 650, 729
GlaI GCGC 1 cut(s) 125
GluI GCNGC 5 cut(s) 61, 64, 99, 102, 845
GsaI CCCAGC 1 cut(s) 925
GsuI CTGGAG 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 2 cut(s) 6, 90
HapII CCGG 2 cut(s) 300, 626
HgaI GACGC 2 cut(s) 170, 465
HhaI GCGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 97, 271
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 5 cut(s) 280, 293, 674, 736, 947
HpaII CCGG 2 cut(s) 300, 626
HphI GGTGA 2 cut(s) 40, 397
Hpy166II GTNNAC 2 cut(s) 326, 808
Hpy188I TCNGA 4 cut(s) 453, 471, 859, 959
Hpy188III TCNNGA 4 cut(s) 191, 356, 545, 593
Hpy8I GTNNAC 2 cut(s) 326, 808
Hpy99I CGWCG 2 cut(s) 164, 481
HpyAV CCTTC 6 cut(s) 13, 206, 238, 373, 726, 770
HpyCH4III ACNGT 2 cut(s) 520, 867
HpyCH4V TGCA 7 cut(s) 271, 326, 496, 659, 716, 909, 934
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 130, 165, 219, 358, 406, 931
HpyF3I CTNAG 1 cut(s) 795
Hsp92II CATG 2 cut(s) 97, 271
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 662, 691
LmnI GCTCC 4 cut(s) 68, 218, 227, 397
Lsp1109I GCAGC 3 cut(s) 85, 88, 831
MaeI CTAG 3 cut(s) 579, 650, 729
MaeIII GTNAC 2 cut(s) 538, 877
MalI GATC 2 cut(s) 664, 693
MbiI CCGCTC 1 cut(s) 213
MboI GATC 2 cut(s) 662, 691
MboII GAAGA 5 cut(s) 43, 514, 734, 818, 889
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 3 cut(s) 8, 328, 402
MluCI AATT 1 cut(s) 457
MlyI GAGTC 2 cut(s) 274, 730
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 4 cut(s) 456, 644, 669, 819
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 2 cut(s) 300, 626
MspR9I CCNGG 6 cut(s) 9, 87, 301, 534, 603, 626
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 4 cut(s) 9, 87, 534, 603
MvnI CGCG 2 cut(s) 120, 159
MwoI GCNNNNNNNGC 7 cut(s) 110, 130, 165, 219, 358, 406, 931
NciI CCSGG 2 cut(s) 301, 626
NdeII GATC 2 cut(s) 662, 691
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 2 cut(s) 97, 271
NlaIV GGNNCC 5 cut(s) 6, 70, 83, 399, 615
NspV TTCGAA 1 cut(s) 291
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 524
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 3 cut(s) 293, 674, 947
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 78
PfoI TCCNGGA 2 cut(s) 299, 624
PkrI GCNGC 5 cut(s) 62, 65, 100, 103, 846
PleI GAGTC 2 cut(s) 274, 730
PpsI GAGTC 2 cut(s) 274, 730
PpuMI RGGWCCY 2 cut(s) 193, 247
PshAI GACNNNNGTC 1 cut(s) 813
PshBI ATTAAT 1 cut(s) 456
Psp5II RGGWCCY 2 cut(s) 193, 247
Psp6I CCWGG 4 cut(s) 7, 85, 532, 601
PspFI CCCAGC 1 cut(s) 921
PspGI CCWGG 4 cut(s) 7, 85, 532, 601
PspN4I GGNNCC 5 cut(s) 6, 70, 83, 399, 615
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 6 cut(s) 4, 5, 154, 193, 247, 524
PspPPI RGGWCCY 2 cut(s) 193, 247
PsrI GAACNNNNNNTAC 2 cut(s) 870, 902
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 662
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 864, 869
RsaNI GTAC 2 cut(s) 863, 868
Rsr2I CGGWCCG 1 cut(s) 524
RsrII CGGWCCG 1 cut(s) 524
SaqAI TTAA 4 cut(s) 456, 644, 669, 819
SatI GCNGC 5 cut(s) 61, 64, 99, 102, 845
Sau3AI GATC 2 cut(s) 662, 691
Sau96I GGNCC 6 cut(s) 4, 5, 154, 193, 247, 524
SchI GAGTC 2 cut(s) 274, 730
ScrFI CCNGG 6 cut(s) 9, 87, 301, 534, 603, 626
SduI GDGCHC 3 cut(s) 8, 328, 402
SfcI CTRYAG 1 cut(s) 811
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 4 cut(s) 154, 193, 247, 524
SmlI CTYRAG 3 cut(s) 128, 356, 543
SmoI CTYRAG 3 cut(s) 128, 356, 543
Sse9I AATT 1 cut(s) 457
SsiI CCGC 8 cut(s) 60, 63, 66, 111, 118, 157, 211, 751
SspMI CTAG 3 cut(s) 579, 650, 729
StyD4I CCNGG 6 cut(s) 7, 85, 299, 532, 601, 624
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 2 cut(s) 520, 867
TaqI TCGA 2 cut(s) 291, 829
TaqII GACCGA 1 cut(s) 512
TasI AATT 1 cut(s) 457
TatI WGTACW 2 cut(s) 862, 867
TauI GCSGC 2 cut(s) 63, 66
TfiI GAWTC 3 cut(s) 293, 674, 947
Tru1I TTAA 4 cut(s) 456, 644, 669, 819
Tru9I TTAA 4 cut(s) 456, 644, 669, 819
TscAI CASTG 2 cut(s) 684, 752
TseI GCWGC 3 cut(s) 98, 101, 844
TspDTI ATGAA 4 cut(s) 43, 455, 521, 804
TspGWI ACGGA 2 cut(s) 516, 788
TspRI CASTG 2 cut(s) 684, 752
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 78
VneI GTGCAC 1 cut(s) 324
VpaK11BI GGWCC 4 cut(s) 154, 193, 247, 524
VspI ATTAAT 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 3 cut(s) 579, 650, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.