Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Forward (+)

35937034 .. 35938363

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAACTACGGTTGGTTTGATCCCGAATGGGTACGTAGGCAATCTAGTGACCCACTAGATACAACCACAAATTCAAATAGAATCTCCGACTCCACCGGTCAAATTCAACCAGTCCTAAATTGGATCACCGACTCAATCAAATTCTTCCAACACCAGACGGTCACTAAAACCCAGAGACGGTCAACATTTGAAGGTTTCCCGGATAGAGAAATGGGCCCAGGAGGATTGAAGGAAGTGGTGAAGAAGGGTCTGGTATTGGCAGAGATGGAGTTCATCAGCGGCGGCGGAGCCATCAACTGGTTCCCAGGCCACATGGCTGCTGCCACCACCGCCATCCGCGAGCGCCTCAAGCTCGCCGACCTCGTCATTGAGGTCCGCGACGCTCGCATTCCTTTGTCCTCTGCCAATCAGGACCTTCAGCCCCAACTCCGCTCCAAACGCTCCCTTGTTGCCCTCAACAAGAAGGACCTCGCCAACCCCAATATCATGCACGTAATATATATATATATATATATATATATATATATATATATATATATATTCCTCATCTCTCCTATTCTTCTTGTTCTTGTTGTTGTTGTTGGTATCATGTTCTTGATGAATTCGATACTTAGTGCTTCAATTTCTGCAGAGATGGACTCGGTTTTTCGAATCGTCGGGGAAAGATTGCCTTCCCATAAGTGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

229

Amino Acids

25.94

Weight (kDa)

8.97

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	432
AccII	CGCG	2 cut(s)	339, 378
AciI	CCGC	7 cut(s)	279, 282, 285, 330, 337, 376, 430
AclWI	GGATC	2 cut(s)	14, 131
AcsI	RAATTY	4 cut(s)	70, 102, 140, 601
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	177, 297
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	5 cut(s)	75, 107, 191, 229, 621
AjnI	CCWGG	2 cut(s)	217, 304
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
Alw21I	GWGCWC	1 cut(s)	686
Alw26I	GTCTC	1 cut(s)	169
Alw44I	GTGCAC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	14, 131
AoxI	GGCC	2 cut(s)	214, 307
ApaI	GGGCCC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	682
ApeKI	GCWGC	2 cut(s)	317, 320
ApoI	RAATTY	4 cut(s)	70, 102, 140, 601
AsiGI	ACCGGT	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	5 cut(s)	214, 215, 373, 412, 466
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	118, 250
AsuII	TTCGAA	1 cut(s)	649
AvaII	GGWCC	3 cut(s)	373, 412, 466
BaeGI	GKGCMC	2 cut(s)	218, 686
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	2 cut(s)	304, 307
BccI	CCATC	4 cut(s)	259, 299, 341, 628
BciT130I	CCWGG	2 cut(s)	219, 306
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	45, 56
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	346
BisI	GCNGC	4 cut(s)	280, 283, 318, 321
BlsI	GCNGC	4 cut(s)	281, 284, 319, 322
Bme1390I	CCNGG	3 cut(s)	200, 219, 306
Bme18I	GGWCC	3 cut(s)	373, 412, 466
BmgT120I	GGNCC	5 cut(s)	214, 215, 373, 412, 466
BmiI	GGNNCC	3 cut(s)	216, 289, 302
BmrFI	CCNGG	3 cut(s)	200, 219, 306
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
Bpu14I	TTCGAA	1 cut(s)	649
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	200
BsaAI	YACGTR	2 cut(s)	35, 493
BsaJI	CCNNGG	2 cut(s)	217, 304
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 297
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	110, 302
BseBI	CCWGG	2 cut(s)	219, 306
BseDI	CCNNGG	2 cut(s)	217, 304
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	177, 297
BseNI	ACTGG	2 cut(s)	110, 302
BseSI	GKGCMC	2 cut(s)	218, 686
BseXI	GCAGC	2 cut(s)	304, 307
Bsh1236I	CGCG	2 cut(s)	339, 378
BshFI	GGCC	2 cut(s)	216, 309
BshTI	ACCGGT	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	686
BsiSI	CCGG	2 cut(s)	96, 200
BslI	CCNNNNNNNGG	2 cut(s)	177, 297
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	216, 309
Bsp119I	TTCGAA	1 cut(s)	649
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	218, 686
Bsp143I	GATC	2 cut(s)	19, 123
BspACI	CCGC	7 cut(s)	279, 282, 285, 330, 337, 376, 430
BspANI	GGCC	2 cut(s)	216, 309
BspFNI	CGCG	2 cut(s)	339, 378
BspLI	GGNNCC	3 cut(s)	216, 289, 302
BspMAI	CTGCAG	1 cut(s)	631
BspPI	GGATC	2 cut(s)	14, 131
BspT104I	TTCGAA	1 cut(s)	649
BsrBI	CCGCTC	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	110, 302
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	217, 304
BssMI	GATC	2 cut(s)	19, 123
Bst2UI	CCWGG	2 cut(s)	219, 306
Bst4CI	ACNGT	3 cut(s)	11, 160, 180
BstBAI	YACGTR	2 cut(s)	35, 493
BstBI	TTCGAA	1 cut(s)	649
BstC8I	GCNNGC	3 cut(s)	341, 354, 385
BstDEI	CTNAG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	333
BstFNI	CGCG	2 cut(s)	339, 378
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	22, 126
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	19, 123
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 349, 384, 438
BstNI	CCWGG	2 cut(s)	219, 306
BstSCI	CCNGG	3 cut(s)	198, 217, 304
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	2 cut(s)	218, 686
BstSNI	TACGTA	1 cut(s)	35
BstUI	CGCG	2 cut(s)	339, 378
BstV1I	GCAGC	2 cut(s)	304, 307
BsuRI	GGCC	2 cut(s)	216, 309
BtsCI	GGATG	1 cut(s)	333
Cac8I	GCNNGC	3 cut(s)	341, 354, 385
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	5 cut(s)	214, 215, 373, 412, 466
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	32
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	313, 487, 589
CviJI	RGCY	6 cut(s)	216, 290, 309, 317, 352, 421
CviKI_1	RGCY	6 cut(s)	216, 290, 309, 317, 352, 421
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	2 cut(s)	21, 125
DpnII	GATC	2 cut(s)	19, 123
EciI	GGCGGA	1 cut(s)	300
Eco105I	TACGTA	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	373, 412, 466
Eco57I	CTGAAG	1 cut(s)	401
EcoO109I	RGGNCCY	2 cut(s)	412, 466
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	217, 304
EcoT38I	GRGCYC	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	3 cut(s)	316, 490, 592
FalI	AAGNNNNNCTT	2 cut(s)	655, 687
FatI	CATG	3 cut(s)	312, 486, 588
Fnu4HI	GCNGC	4 cut(s)	280, 283, 318, 321
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	4 cut(s)	280, 283, 318, 321
FspBI	CTAG	2 cut(s)	45, 56
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	4 cut(s)	280, 283, 318, 321
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	216, 309
HapII	CCGG	2 cut(s)	96, 200
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	316, 490, 592
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	5 cut(s)	81, 89, 131, 638, 651
HpaII	CCGG	2 cut(s)	96, 200
HphI	GGTGA	2 cut(s)	118, 250
Hpy166II	GTNNAC	2 cut(s)	183, 684
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	23, 410, 595
Hpy8I	GTNNAC	2 cut(s)	183, 684
Hpy99I	CGWCG	2 cut(s)	383, 659
HpyAV	CCTTC	6 cut(s)	185, 223, 238, 425, 457, 681
HpyCH4III	ACNGT	3 cut(s)	11, 160, 180
HpyCH4IV	ACGT	2 cut(s)	34, 492
HpyCH4V	TGCA	3 cut(s)	490, 629, 684
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 349, 384, 438
HpyF3I	CTNAG	1 cut(s)	611
HpySE526I	ACGT	2 cut(s)	34, 492
Hsp92II	CATG	3 cut(s)	316, 490, 592
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	19, 123
LmnI	GCTCC	3 cut(s)	287, 437, 446
Lsp1109I	GCAGC	2 cut(s)	304, 307
MaeI	CTAG	2 cut(s)	45, 56
MaeII	ACGT	2 cut(s)	34, 492
MaeIII	GTNAC	2 cut(s)	47, 160
MalI	GATC	2 cut(s)	21, 125
MbiI	CCGCTC	1 cut(s)	432
MboI	GATC	2 cut(s)	19, 123
MboII	GAAGA	3 cut(s)	136, 253, 551
MhlI	GDGCHC	2 cut(s)	218, 686
MluCI	AATT	6 cut(s)	70, 102, 118, 140, 601, 621
MlyI	GAGTC	3 cut(s)	83, 125, 632
MmeI	TCCRAC	2 cut(s)	111, 172
MnlI	CCTC	8 cut(s)	215, 356, 364, 371, 409, 464, 479, 554
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	2 cut(s)	96, 200
MspR9I	CCNGG	3 cut(s)	200, 219, 306
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	219, 306
MvnI	CGCG	2 cut(s)	339, 378
MwoI	GCNNNNNNNGC	4 cut(s)	329, 349, 384, 438
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	19, 123
NlaIII	CATG	3 cut(s)	316, 490, 592
NlaIV	GGNNCC	3 cut(s)	216, 289, 302
NmuCI	GTSAC	2 cut(s)	47, 160
NspV	TTCGAA	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	81, 651
PflFI	GACNNNGTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	198
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	281, 284, 319, 322
PleI	GAGTC	3 cut(s)	83, 125, 632
PpsI	GAGTC	3 cut(s)	83, 125, 632
Ppu21I	YACGTR	2 cut(s)	35, 493
PpuMI	RGGWCCY	2 cut(s)	412, 466
Psp5II	RGGWCCY	2 cut(s)	412, 466
Psp6I	CCWGG	2 cut(s)	217, 304
PspGI	CCWGG	2 cut(s)	217, 304
PspN4I	GGNNCC	3 cut(s)	216, 289, 302
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	5 cut(s)	214, 215, 373, 412, 466
PspPPI	RGGWCCY	2 cut(s)	412, 466
PstI	CTGCAG	1 cut(s)	631
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SatI	GCNGC	4 cut(s)	280, 283, 318, 321
Sau3AI	GATC	2 cut(s)	19, 123
Sau96I	GGNCC	5 cut(s)	214, 215, 373, 412, 466
SchI	GAGTC	3 cut(s)	83, 125, 632
ScrFI	CCNGG	3 cut(s)	200, 219, 306
SduI	GDGCHC	2 cut(s)	218, 686
SetI	ASST	8 cut(s)	37, 196, 354, 363, 375, 417, 471, 495
SfcI	CTRYAG	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	649
SinI	GGWCC	3 cut(s)	373, 412, 466
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SnaBI	TACGTA	1 cut(s)	35
Sse9I	AATT	6 cut(s)	70, 102, 118, 140, 601, 621
SsiI	CCGC	7 cut(s)	279, 282, 285, 330, 337, 376, 430
SspMI	CTAG	2 cut(s)	45, 56
StyD4I	CCNGG	3 cut(s)	198, 217, 304
TaaI	ACNGT	3 cut(s)	11, 160, 180
TaiI	ACGT	2 cut(s)	37, 495
TaqI	TCGA	2 cut(s)	605, 649
TasI	AATT	6 cut(s)	70, 102, 118, 140, 601, 621
TauI	GCSGC	2 cut(s)	282, 285
TfiI	GAWTC	2 cut(s)	81, 651
TseFI	GTSAC	2 cut(s)	47, 160
TseI	GCWGC	2 cut(s)	317, 320
Tsp45I	GTSAC	2 cut(s)	47, 160
TspDTI	ATGAA	3 cut(s)	17, 262, 614
Tth111I	GACNNNGTC	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	297
VneI	GTGCAC	1 cut(s)	682
VpaK11BI	GGWCC	3 cut(s)	373, 412, 466
XapI	RAATTY	4 cut(s)	70, 102, 140, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XspI	CTAG	2 cut(s)	45, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.