Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003197

Physical Location & Seq

Genomic Coordinates Forward (+)

9320853 .. 9323086

Gene Structure 2234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1076600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGGTTACGGTCAAAAGGGTTGGTGAAGAAGGGGATAATGGGGTTGGGAGACATGGGTTTCAACACTAGAGTCGGAGCCATTAATTGGTTCCCCGGCCACATGGCTGCCGCCACACGCACCATCCACGACCGCCTCAAGTTCGCCGACTTCGTCATCGAGGTCCGGGACGCTCGTATTCCACTGTCCTCTGCCAACCAAGACCTCCAGCCCCAGCTCCGTGCCAAACGCTCCCTCATTGTCCTCAACAAGAAGGACCTCACCAATCCCAACATCATGCAAAAATGTACTCGATTTTTTGAATCCTCCAAGCAAGATTGCCTTCCCATCAATGCACATAGCAGGAGTTCGGTTTCTAAGCTTCTTGAGCTGGTGGAGTATAAGCTGAAGGAAGCGATTTCGAGGGAACCTACTATGCTTGTTATGGTTGTTGGTGTTCCTCATGTTGGGAAATCAGCTCTAATCAATAATATTCATCGGATTGCATCCTCTCGCTTTCCCGTTCAGGGGAAGATGAAGCACGCTACGGTAGGTCCATTGCCTGGTGTTACTCAGGACATTGCTGGATTCAAGATTGCTCATCAGCCTAGCATATATGTTCTCGATACTCCAGGTGTGTTGGTTCCAAGTATCCCAAACATAGAGACGGGGTTAAAGCAAGCTCTTGCAGGATCTATTAAGGACTCCGTGGTAAGGGAGGATCGAATTGCGAATTGCTCAATATTTACTTGCAGTTCTAAATTCAAGAGGGACACCTTTTCACTGGAAGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005840 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0019866 GO:0022613 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032268 GO:0032991 GO:0034248 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043576 GO:0044057 GO:0044065 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0071840 GO:0080090 GO:0098798 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

259

Amino Acids

28.41

Weight (kDa)

9.87

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	141 - 224	1.4e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41670 AT2G41670
fragaria_vesca	FvH4_6g24210 FvH4_6g24210
malus_domestica	MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1
prunus_persica	Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1
pyrus_communis	pycom12g06560 pycom14g06380
rosa_chinensis	RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961
rosa_laevigata	RLG00000023314
rosa_multiflora	Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800
rosa_rugosa	Rorug03G0202700
rosa_samantha	Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700
rosa_wichuraiana	Rw3G022600 Rw3G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	87, 542
AciI	CCGC	2 cut(s)	111, 133
AclWI	GGATC	2 cut(s)	679, 708
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	6 cut(s)	87, 446, 506, 507, 542, 693
AgsI	TTSAA	4 cut(s)	64, 302, 571, 745
AjnI	CCWGG	2 cut(s)	541, 610
AluBI	AGCT	6 cut(s)	217, 361, 370, 385, 458, 662
AluI	AGCT	6 cut(s)	217, 361, 370, 385, 458, 662
Alw26I	GTCTC	2 cut(s)	45, 638
AlwI	GGATC	2 cut(s)	679, 708
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	740
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	163, 256, 533
AsuC2I	CCSGG	2 cut(s)	96, 167
AsuHPI	GGTGA	2 cut(s)	37, 253
AvaII	GGWCC	3 cut(s)	163, 256, 533
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	131, 335
BciT130I	CCWGG	2 cut(s)	543, 612
BciVI	GTATCC	1 cut(s)	641
BcnI	CCSGG	2 cut(s)	96, 167
BcoDI	GTCTC	2 cut(s)	45, 638
BfaI	CTAG	2 cut(s)	69, 588
BfuI	GTATCC	1 cut(s)	641
BisI	GCNGC	2 cut(s)	108, 111
BlsI	GCNGC	2 cut(s)	109, 112
Bme1390I	CCNGG	4 cut(s)	96, 167, 543, 612
Bme18I	GGWCC	3 cut(s)	163, 256, 533
BmgT120I	GGNCC	3 cut(s)	163, 256, 533
BmiI	GGNNCC	4 cut(s)	79, 92, 408, 624
BmrFI	CCNGG	4 cut(s)	96, 167, 543, 612
BmsI	GCATC	1 cut(s)	494
BpmI	CTGGAG	2 cut(s)	191, 594
BpuEI	CTTGAG	2 cut(s)	122, 386
BpuMI	CCSGG	2 cut(s)	96, 167
BsaJI	CCNNGG	2 cut(s)	94, 687
Bsc4I	CCNNNNNNNGG	6 cut(s)	87, 446, 506, 507, 542, 693
Bse1I	ACTGG	1 cut(s)	768
Bse3DI	GCAATG	2 cut(s)	536, 558
BseBI	CCWGG	2 cut(s)	543, 612
BseDI	CCNNGG	2 cut(s)	94, 687
BseGI	GGATG	2 cut(s)	123, 485
BseLI	CCNNNNNNNGG	6 cut(s)	87, 446, 506, 507, 542, 693
BseMI	GCAATG	2 cut(s)	536, 558
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	768
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	96, 166
BslFI	GGGAC	2 cut(s)	182, 764
BslI	CCNNNNNNNGG	6 cut(s)	87, 446, 506, 507, 542, 693
BsmAI	GTCTC	2 cut(s)	45, 638
BsmBI	CGTCTC	1 cut(s)	638
BsmFI	GGGAC	2 cut(s)	182, 764
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	671, 700
BspACI	CCGC	2 cut(s)	111, 133
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	565
BspLI	GGNNCC	4 cut(s)	79, 92, 408, 624
BspPI	GGATC	2 cut(s)	679, 708
BsrDI	GCAATG	2 cut(s)	536, 558
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	2 cut(s)	94, 687
BssMI	GATC	2 cut(s)	671, 700
Bst2UI	CCWGG	2 cut(s)	543, 612
Bst4CI	ACNGT	3 cut(s)	12, 186, 529
BstC8I	GCNNGC	2 cut(s)	522, 660
BstDEI	CTNAG	2 cut(s)	357, 552
BstDSI	CCRYGG	1 cut(s)	687
BstF5I	GGATG	2 cut(s)	123, 485
BstKTI	GATC	2 cut(s)	674, 703
BstMAI	GTCTC	2 cut(s)	45, 638
BstMBI	GATC	2 cut(s)	671, 700
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	2 cut(s)	543, 612
BstSCI	CCNGG	4 cut(s)	94, 165, 541, 610
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	123, 485
BtsIMutI	CAGTG	2 cut(s)	182, 761
Cac8I	GCNNGC	2 cut(s)	522, 660
Cfr13I	GGNCC	3 cut(s)	163, 256, 533
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	4 cut(s)	55, 103, 277, 443
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	357, 552
DpnI	GATC	2 cut(s)	673, 702
DpnII	GATC	2 cut(s)	671, 700
EaeI	YGGCCR	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	163, 256, 533
Eco57I	CTGAAG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	541, 610
Esp3I	CGTCTC	1 cut(s)	638
FaeI	CATG	4 cut(s)	58, 106, 280, 446
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	2 cut(s)	182, 764
FatI	CATG	4 cut(s)	54, 102, 276, 442
Fnu4HI	GCNGC	2 cut(s)	108, 111
FokI	GGATG	2 cut(s)	110, 472
Fsp4HI	GCNGC	2 cut(s)	108, 111
FspBI	CTAG	2 cut(s)	69, 588
GluI	GCNGC	2 cut(s)	108, 111
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	2 cut(s)	191, 594
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	96, 166
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	58, 106, 280, 446
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	4 cut(s)	72, 302, 567, 683
HpaII	CCGG	2 cut(s)	96, 166
HphI	GGTGA	2 cut(s)	37, 253
Hpy188I	TCNGA	2 cut(s)	77, 480
Hpy188III	TCNNGA	5 cut(s)	365, 554, 571, 602, 745
HpyAV	CCTTC	4 cut(s)	25, 247, 332, 382
HpyCH4III	ACNGT	3 cut(s)	12, 186, 529
HpyCH4V	TGCA	5 cut(s)	280, 335, 485, 668, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	2 cut(s)	357, 552
Hsp92II	CATG	4 cut(s)	58, 106, 280, 446
Kzo9I	GATC	2 cut(s)	671, 700
LmnI	GCTCC	3 cut(s)	77, 222, 236
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	2 cut(s)	69, 588
MaeIII	GTNAC	2 cut(s)	6, 547
MalI	GATC	2 cut(s)	673, 702
MboI	GATC	2 cut(s)	671, 700
MboII	GAAGA	2 cut(s)	40, 523
MflI	RGATCY	1 cut(s)	671
MluCI	AATT	4 cut(s)	85, 705, 712, 740
MlyI	GAGTC	2 cut(s)	81, 677
MmeI	TCCRAC	1 cut(s)	55
MseI	TTAA	3 cut(s)	84, 653, 678
MspI	CCGG	2 cut(s)	96, 166
MspR9I	CCNGG	4 cut(s)	96, 167, 543, 612
MvaI	CCWGG	2 cut(s)	543, 612
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	2 cut(s)	96, 167
NdeII	GATC	2 cut(s)	671, 700
NlaIII	CATG	4 cut(s)	58, 106, 280, 446
NlaIV	GGNNCC	4 cut(s)	79, 92, 408, 624
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	302, 567
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	2 cut(s)	87, 542
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	109, 112
PleI	GAGTC	2 cut(s)	80, 677
PpsI	GAGTC	2 cut(s)	80, 677
PpuMI	RGGWCCY	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	541, 610
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	541, 610
PspN4I	GGNNCC	4 cut(s)	79, 92, 408, 624
PspPI	GGNCC	3 cut(s)	163, 256, 533
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	671
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	84, 653, 678
SatI	GCNGC	2 cut(s)	108, 111
Sau3AI	GATC	2 cut(s)	671, 700
Sau96I	GGNCC	3 cut(s)	163, 256, 533
SchI	GAGTC	2 cut(s)	81, 677
ScrFI	CCNGG	4 cut(s)	96, 167, 543, 612
SfaNI	GCATC	1 cut(s)	494
SinI	GGWCC	3 cut(s)	163, 256, 533
SmlI	CTYRAG	2 cut(s)	137, 365
SmoI	CTYRAG	2 cut(s)	137, 365
Sse9I	AATT	4 cut(s)	85, 705, 712, 740
SsiI	CCGC	2 cut(s)	111, 133
SspI	AATATT	2 cut(s)	472, 723
SspMI	CTAG	2 cut(s)	69, 588
StyD4I	CCNGG	4 cut(s)	94, 165, 541, 610
TaaI	ACNGT	3 cut(s)	12, 186, 529
TaqI	TCGA	5 cut(s)	159, 292, 401, 603, 703
TasI	AATT	4 cut(s)	85, 705, 712, 740
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	302, 567
Tru1I	TTAA	3 cut(s)	84, 653, 678
Tru9I	TTAA	3 cut(s)	84, 653, 678
TscAI	CASTG	2 cut(s)	189, 768
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	464, 530
TspGWI	ACGGA	2 cut(s)	209, 676
TspRI	CASTG	2 cut(s)	189, 768
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	2 cut(s)	87, 542
VpaK11BI	GGWCC	3 cut(s)	163, 256, 533
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	1 cut(s)	740
XspI	CTAG	2 cut(s)	69, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.