Mitochondrial
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41670 AT2G41670 |
| fragaria_vesca | FvH4_6g24210 FvH4_6g24210 |
| malus_domestica | MD12G1076200.v1.1 MD12G1076600.v1.1 MD14G1074700.v1.1 |
| prunus_persica | Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056100_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 Prupe.7G056300_v2.0.a1 |
| pyrus_communis | pycom12g06560 pycom14g06380 |
| rosa_chinensis | RchiOBHm_Chr3g0456001 RchiOBHm_Chr3g0482961 |
| rosa_laevigata | RLG00000023314 |
| rosa_multiflora | Rmu_sc0003351.1_g000009 Rmu_ssc0000175.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00234060 Rroxscaffold_3G00243390 Rroxscaffold_3G00243430 Rroxscaffold_3G00243460 Rroxscaffold_3G00243470 Rroxscaffold_6G00398800 |
| rosa_rugosa | Rorug03G0202700 |
| rosa_samantha | Rh3AG251500 Rh3BG287900 Rh3CG285300 Rh3DG280900 Rh7AG167700 |
| rosa_wichuraiana | Rw3G022600 Rw3G022700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 87, 464 |
| AccBSI | CCGCTC | 1 cut(s) | 222 |
| AccII | CGCG | 2 cut(s) | 120, 129 |
| AciI | CCGC | 4 cut(s) | 127, 192, 220, 1052 |
| AclI | AACGTT | 1 cut(s) | 229 |
| AclWI | GGATC | 3 cut(s) | 601, 630, 819 |
| AcoI | YGGCCR | 1 cut(s) | 97 |
| AcsI | RAATTY | 3 cut(s) | 19, 857, 983 |
| AcuI | CTGAAG | 3 cut(s) | 191, 329, 843 |
| AfaI | GTAC | 2 cut(s) | 803, 897 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 87, 324, 428, 464, 678, 950, 951, 999 |
| AgsI | TTSAA | 5 cut(s) | 64, 493, 716, 862, 917 |
| AjnI | CCWGG | 3 cut(s) | 94, 463, 532 |
| AluBI | AGCT | 9 cut(s) | 142, 217, 292, 417, 446, 580, 584, 962, 1046 |
| AluI | AGCT | 9 cut(s) | 142, 217, 292, 417, 446, 580, 584, 962, 1046 |
| Alw26I | GTCTC | 2 cut(s) | 560, 795 |
| AlwI | GGATC | 3 cut(s) | 601, 630, 819 |
| AoxI | GGCC | 3 cut(s) | 97, 454, 1015 |
| ApaI | GGGCCC | 1 cut(s) | 458 |
| ApeKI | GCWGC | 3 cut(s) | 107, 110, 829 |
| ApoI | RAATTY | 3 cut(s) | 19, 857, 983 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 711 |
| AspLEI | GCGC | 2 cut(s) | 120, 122 |
| AspS9I | GGNCC | 5 cut(s) | 163, 256, 454, 455, 1016 |
| AsuHPI | GGTGA | 1 cut(s) | 37 |
| AsuNHI | GCTAGC | 1 cut(s) | 580 |
| AvaII | GGWCC | 2 cut(s) | 163, 256 |
| BaeGI | GKGCMC | 1 cut(s) | 458 |
| BalI | TGGCCA | 1 cut(s) | 99 |
| BanII | GRGCYC | 1 cut(s) | 458 |
| BbvI | GCAGC | 3 cut(s) | 94, 122, 841 |
| BccI | CCATC | 3 cut(s) | 34, 49, 89 |
| BciT130I | CCWGG | 3 cut(s) | 96, 465, 534 |
| BciVI | GTATCC | 1 cut(s) | 563 |
| BcoDI | GTCTC | 2 cut(s) | 560, 795 |
| BfaI | CTAG | 5 cut(s) | 414, 510, 581, 597, 765 |
| BfmI | CTRYAG | 4 cut(s) | 108, 447, 742, 923 |
| BfuI | GTATCC | 1 cut(s) | 563 |
| BisI | GCNGC | 3 cut(s) | 108, 111, 830 |
| BlsI | GCNGC | 3 cut(s) | 109, 112, 831 |
| Bme1390I | CCNGG | 3 cut(s) | 96, 465, 534 |
| Bme18I | GGWCC | 2 cut(s) | 163, 256 |
| BmgT120I | GGNCC | 5 cut(s) | 163, 256, 454, 455, 1016 |
| BmiI | GGNNCC | 5 cut(s) | 79, 92, 330, 456, 546 |
| BmrFI | CCNGG | 3 cut(s) | 96, 465, 534 |
| BmsI | GCATC | 1 cut(s) | 416 |
| BmtI | GCTAGC | 1 cut(s) | 584 |
| BoxI | GACNNNNGTC | 1 cut(s) | 744 |
| BpmI | CTGGAG | 1 cut(s) | 516 |
| BpuEI | CTTGAG | 3 cut(s) | 122, 308, 459 |
| BsaJI | CCNNGG | 1 cut(s) | 94 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 87, 324, 428, 464, 678, 950, 951, 999 |
| Bse118I | RCCGGY | 1 cut(s) | 132 |
| Bse1I | ACTGG | 1 cut(s) | 683 |
| Bse3DI | GCAATG | 1 cut(s) | 480 |
| BseBI | CCWGG | 3 cut(s) | 96, 465, 534 |
| BseDI | CCNNGG | 1 cut(s) | 94 |
| BseGI | GGATG | 3 cut(s) | 42, 883, 1023 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 87, 324, 428, 464, 678, 950, 951, 999 |
| BseMI | GCAATG | 1 cut(s) | 480 |
| BseNI | ACTGG | 1 cut(s) | 683 |
| BsePI | GCGCGC | 1 cut(s) | 118 |
| BseSI | GKGCMC | 1 cut(s) | 458 |
| BseXI | GCAGC | 3 cut(s) | 94, 122, 841 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BsgI | GTGCAG | 2 cut(s) | 446, 848 |
| Bsh1236I | CGCG | 2 cut(s) | 120, 129 |
| Bsh1285I | CGRYCG | 1 cut(s) | 133 |
| BshFI | GGCC | 3 cut(s) | 99, 456, 1017 |
| BsiEI | CGRYCG | 1 cut(s) | 133 |
| BsiSI | CCGG | 2 cut(s) | 69, 133 |
| BslFI | GGGAC | 2 cut(s) | 679, 1022 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 87, 324, 428, 464, 678, 950, 951, 999 |
| BsmAI | GTCTC | 2 cut(s) | 560, 795 |
| BsmFI | GGGAC | 2 cut(s) | 679, 1022 |
| BsmI | GAATGC | 1 cut(s) | 177 |
| BsnI | GGCC | 3 cut(s) | 99, 456, 1017 |
| Bsp120I | GGGCCC | 1 cut(s) | 454 |
| Bsp1286I | GDGCHC | 1 cut(s) | 458 |
| Bsp143I | GATC | 3 cut(s) | 593, 622, 811 |
| BspACI | CCGC | 4 cut(s) | 127, 192, 220, 1052 |
| BspANI | GGCC | 3 cut(s) | 99, 456, 1017 |
| BspFNI | CGCG | 2 cut(s) | 120, 129 |
| BspHI | TCATGA | 1 cut(s) | 1058 |
| BspLI | GGNNCC | 5 cut(s) | 79, 92, 330, 456, 546 |
| BspMAI | CTGCAG | 2 cut(s) | 112, 927 |
| BspOI | GCTAGC | 1 cut(s) | 584 |
| BspPI | GGATC | 3 cut(s) | 601, 630, 819 |
| BsrBI | CCGCTC | 1 cut(s) | 222 |
| BsrDI | GCAATG | 1 cut(s) | 480 |
| BsrFI | RCCGGY | 1 cut(s) | 132 |
| BsrI | ACTGG | 1 cut(s) | 683 |
| BssAI | RCCGGY | 1 cut(s) | 132 |
| BssECI | CCNNGG | 1 cut(s) | 94 |
| BssHII | GCGCGC | 1 cut(s) | 118 |
| BssMI | GATC | 3 cut(s) | 593, 622, 811 |
| Bst2UI | CCWGG | 3 cut(s) | 96, 465, 534 |
| Bst4CI | ACNGT | 2 cut(s) | 451, 746 |
| Bst6I | CTCTTC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 8 cut(s) | 120, 144, 175, 444, 582, 645, 834, 964 |
| BstDEI | CTNAG | 1 cut(s) | 786 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 997 |
| BstF5I | GGATG | 3 cut(s) | 42, 883, 1023 |
| BstFNI | CGCG | 2 cut(s) | 120, 129 |
| BstHHI | GCGC | 2 cut(s) | 120, 122 |
| BstKTI | GATC | 3 cut(s) | 596, 625, 814 |
| BstMAI | GTCTC | 2 cut(s) | 560, 795 |
| BstMBI | GATC | 3 cut(s) | 593, 622, 811 |
| BstMCI | CGRYCG | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 119, 126 |
| BstNI | CCWGG | 3 cut(s) | 96, 465, 534 |
| BstNSI | RCATGY | 1 cut(s) | 836 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 744 |
| BstSCI | CCNGG | 3 cut(s) | 94, 463, 532 |
| BstSFI | CTRYAG | 4 cut(s) | 108, 447, 742, 923 |
| BstSLI | GKGCMC | 1 cut(s) | 458 |
| BstUI | CGCG | 2 cut(s) | 120, 129 |
| BstV1I | GCAGC | 3 cut(s) | 94, 122, 841 |
| BstX2I | RGATCY | 2 cut(s) | 593, 811 |
| BstYI | RGATCY | 2 cut(s) | 593, 811 |
| BsuI | GTATCC | 1 cut(s) | 563 |
| BsuRI | GGCC | 3 cut(s) | 99, 456, 1017 |
| BtsCI | GGATG | 3 cut(s) | 42, 883, 1023 |
| BtsI | GCAGTG | 1 cut(s) | 920 |
| BtsIMutI | CAGTG | 3 cut(s) | 456, 676, 920 |
| Cac8I | GCNNGC | 8 cut(s) | 120, 144, 175, 444, 582, 645, 834, 964 |
| CciI | TCATGA | 1 cut(s) | 1058 |
| CfoI | GCGC | 2 cut(s) | 120, 122 |
| Cfr10I | RCCGGY | 1 cut(s) | 132 |
| Cfr13I | GGNCC | 5 cut(s) | 163, 256, 454, 455, 1016 |
| CseI | GACGC | 1 cut(s) | 179 |
| CsiI | ACCWGGT | 1 cut(s) | 463 |
| Csp6I | GTAC | 2 cut(s) | 802, 896 |
| CviAII | CATG | 5 cut(s) | 103, 277, 794, 833, 1059 |
| CviQI | GTAC | 2 cut(s) | 802, 896 |
| DdeI | CTNAG | 1 cut(s) | 786 |
| DpnI | GATC | 3 cut(s) | 595, 624, 813 |
| DpnII | GATC | 3 cut(s) | 593, 622, 811 |
| DraI | TTTAAA | 1 cut(s) | 654 |
| EaeI | YGGCCR | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 1 cut(s) | 26 |
| EarI | CTCTTC | 1 cut(s) | 26 |
| EciI | GGCGGA | 1 cut(s) | 181 |
| Eco24I | GRGCYC | 1 cut(s) | 458 |
| Eco32I | GATATC | 1 cut(s) | 975 |
| Eco47I | GGWCC | 2 cut(s) | 163, 256 |
| Eco57I | CTGAAG | 3 cut(s) | 191, 329, 843 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 997 |
| EcoO109I | RGGNCCY | 2 cut(s) | 256, 1016 |
| EcoRI | GAATTC | 1 cut(s) | 857 |
| EcoRII | CCWGG | 3 cut(s) | 94, 463, 532 |
| EcoRV | GATATC | 1 cut(s) | 975 |
| EcoT38I | GRGCYC | 1 cut(s) | 458 |
| FaeI | CATG | 5 cut(s) | 106, 280, 797, 836, 1062 |
| FaqI | GGGAC | 2 cut(s) | 679, 1022 |
| FatI | CATG | 5 cut(s) | 102, 276, 793, 832, 1058 |
| Fnu4HI | GCNGC | 3 cut(s) | 108, 111, 830 |
| FokI | GGATG | 3 cut(s) | 49, 890, 1010 |
| FriOI | GRGCYC | 1 cut(s) | 458 |
| Fsp4HI | GCNGC | 3 cut(s) | 108, 111, 830 |
| FspBI | CTAG | 5 cut(s) | 414, 510, 581, 597, 765 |
| GlaI | GCGC | 2 cut(s) | 119, 121 |
| GluI | GCNGC | 3 cut(s) | 108, 111, 830 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 516 |
| HaeIII | GGCC | 3 cut(s) | 99, 456, 1017 |
| HapII | CCGG | 2 cut(s) | 69, 133 |
| HgaI | GACGC | 1 cut(s) | 179 |
| HhaI | GCGC | 2 cut(s) | 120, 122 |
| Hin1II | CATG | 5 cut(s) | 106, 280, 797, 836, 1062 |
| Hin6I | GCGC | 2 cut(s) | 118, 120 |
| HinP1I | GCGC | 2 cut(s) | 118, 120 |
| HincII | GTYRAC | 1 cut(s) | 739 |
| HindII | GTYRAC | 1 cut(s) | 739 |
| HinfI | GANTC | 5 cut(s) | 489, 605, 712, 847, 917 |
| HpaII | CCGG | 2 cut(s) | 69, 133 |
| HphI | GGTGA | 1 cut(s) | 37 |
| Hpy166II | GTNNAC | 1 cut(s) | 739 |
| Hpy188I | TCNGA | 3 cut(s) | 402, 856, 958 |
| Hpy188III | TCNNGA | 5 cut(s) | 287, 476, 493, 524, 1059 |
| Hpy8I | GTNNAC | 1 cut(s) | 739 |
| HpyAV | CCTTC | 4 cut(s) | 215, 304, 701, 922 |
| HpyCH4III | ACNGT | 2 cut(s) | 451, 746 |
| HpyCH4IV | ACGT | 2 cut(s) | 229, 804 |
| HpyCH4V | TGCA | 7 cut(s) | 110, 280, 407, 427, 647, 829, 925 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 119, 126 |
| HpyF3I | CTNAG | 1 cut(s) | 786 |
| HpySE526I | ACGT | 2 cut(s) | 229, 804 |
| Hsp92II | CATG | 5 cut(s) | 106, 280, 797, 836, 1062 |
| HspAI | GCGC | 2 cut(s) | 118, 120 |
| Kzo9I | GATC | 3 cut(s) | 593, 622, 811 |
| LmnI | GCTCC | 3 cut(s) | 77, 222, 227 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 122, 841 |
| LweI | GCATC | 1 cut(s) | 416 |
| MabI | ACCWGGT | 1 cut(s) | 463 |
| MaeI | CTAG | 5 cut(s) | 414, 510, 581, 597, 765 |
| MaeII | ACGT | 2 cut(s) | 229, 804 |
| MaeIII | GTNAC | 4 cut(s) | 167, 469, 817, 884 |
| MalI | GATC | 3 cut(s) | 595, 624, 813 |
| MbiI | CCGCTC | 1 cut(s) | 222 |
| MboI | GATC | 3 cut(s) | 593, 622, 811 |
| MboII | GAAGA | 5 cut(s) | 40, 43, 402, 694, 749 |
| MflI | RGATCY | 2 cut(s) | 593, 811 |
| MhlI | GDGCHC | 1 cut(s) | 458 |
| MlsI | TGGCCA | 1 cut(s) | 99 |
| MluCI | AATT | 6 cut(s) | 19, 237, 627, 648, 857, 983 |
| MluNI | TGGCCA | 1 cut(s) | 99 |
| MlyI | GAGTC | 1 cut(s) | 841 |
| MmeI | TCCRAC | 1 cut(s) | 936 |
| Mox20I | TGGCCA | 1 cut(s) | 99 |
| MroXI | GAANNNNTTC | 1 cut(s) | 711 |
| MscI | TGGCCA | 1 cut(s) | 99 |
| MseI | TTAA | 4 cut(s) | 14, 575, 653, 750 |
| Msp20I | TGGCCA | 1 cut(s) | 99 |
| MspI | CCGG | 2 cut(s) | 69, 133 |
| MspR9I | CCNGG | 3 cut(s) | 96, 465, 534 |
| Mva1269I | GAATGC | 1 cut(s) | 177 |
| MvaI | CCWGG | 3 cut(s) | 96, 465, 534 |
| MvnI | CGCG | 2 cut(s) | 120, 129 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 119, 126 |
| NdeII | GATC | 3 cut(s) | 593, 622, 811 |
| NheI | GCTAGC | 1 cut(s) | 580 |
| NlaIII | CATG | 5 cut(s) | 106, 280, 797, 836, 1062 |
| NlaIV | GGNNCC | 5 cut(s) | 79, 92, 330, 456, 546 |
| NmuCI | GTSAC | 2 cut(s) | 167, 884 |
| NspI | RCATGY | 1 cut(s) | 836 |
| PaeI | GCATGC | 1 cut(s) | 836 |
| PagI | TCATGA | 1 cut(s) | 1058 |
| PauI | GCGCGC | 1 cut(s) | 118 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 150 |
| PctI | GAATGC | 1 cut(s) | 177 |
| PdmI | GAANNNNTTC | 1 cut(s) | 711 |
| PfeI | GAWTC | 4 cut(s) | 489, 605, 712, 917 |
| PflFI | GACNNNGTC | 2 cut(s) | 152, 850 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 87, 464 |
| PkrI | GCNGC | 3 cut(s) | 109, 112, 831 |
| PleI | GAGTC | 1 cut(s) | 841 |
| PpsI | GAGTC | 1 cut(s) | 841 |
| PpuMI | RGGWCCY | 1 cut(s) | 256 |
| PshAI | GACNNNNGTC | 1 cut(s) | 744 |
| Psp1406I | AACGTT | 1 cut(s) | 229 |
| Psp5II | RGGWCCY | 1 cut(s) | 256 |
| Psp6I | CCWGG | 3 cut(s) | 94, 463, 532 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 3 cut(s) | 94, 463, 532 |
| PspN4I | GGNNCC | 5 cut(s) | 79, 92, 330, 456, 546 |
| PspOMI | GGGCCC | 1 cut(s) | 454 |
| PspPI | GGNCC | 5 cut(s) | 163, 256, 454, 455, 1016 |
| PspPPI | RGGWCCY | 1 cut(s) | 256 |
| PstI | CTGCAG | 2 cut(s) | 112, 927 |
| PsuI | RGATCY | 2 cut(s) | 593, 811 |
| PsyI | GACNNNGTC | 2 cut(s) | 152, 850 |
| PteI | GCGCGC | 1 cut(s) | 118 |
| RsaI | GTAC | 2 cut(s) | 803, 897 |
| RsaNI | GTAC | 2 cut(s) | 802, 896 |
| SaqAI | TTAA | 4 cut(s) | 14, 575, 653, 750 |
| SatI | GCNGC | 3 cut(s) | 108, 111, 830 |
| Sau3AI | GATC | 3 cut(s) | 593, 622, 811 |
| Sau96I | GGNCC | 5 cut(s) | 163, 256, 454, 455, 1016 |
| SchI | GAGTC | 1 cut(s) | 841 |
| ScrFI | CCNGG | 3 cut(s) | 96, 465, 534 |
| SduI | GDGCHC | 1 cut(s) | 458 |
| SexAI | ACCWGGT | 1 cut(s) | 463 |
| SfaNI | GCATC | 1 cut(s) | 416 |
| SfcI | CTRYAG | 4 cut(s) | 108, 447, 742, 923 |
| SinI | GGWCC | 2 cut(s) | 163, 256 |
| SmlI | CTYRAG | 3 cut(s) | 137, 287, 474 |
| SmoI | CTYRAG | 3 cut(s) | 137, 287, 474 |
| SphI | GCATGC | 1 cut(s) | 836 |
| Sse9I | AATT | 6 cut(s) | 19, 237, 627, 648, 857, 983 |
| SsiI | CCGC | 4 cut(s) | 127, 192, 220, 1052 |
| SspI | AATATT | 1 cut(s) | 394 |
| SspMI | CTAG | 5 cut(s) | 414, 510, 581, 597, 765 |
| StyD4I | CCNGG | 3 cut(s) | 94, 463, 532 |
| TaaI | ACNGT | 2 cut(s) | 451, 746 |
| TaiI | ACGT | 2 cut(s) | 232, 807 |
| TaqI | TCGA | 4 cut(s) | 323, 625, 760, 845 |
| TasI | AATT | 6 cut(s) | 19, 237, 627, 648, 857, 983 |
| TfiI | GAWTC | 4 cut(s) | 489, 605, 712, 917 |
| Tru1I | TTAA | 4 cut(s) | 14, 575, 653, 750 |
| Tru9I | TTAA | 4 cut(s) | 14, 575, 653, 750 |
| TscAI | CASTG | 3 cut(s) | 456, 683, 927 |
| TseFI | GTSAC | 2 cut(s) | 167, 884 |
| TseI | GCWGC | 3 cut(s) | 107, 110, 829 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 884 |
| TspDTI | ATGAA | 5 cut(s) | 386, 452, 735, 1012, 1047 |
| TspGWI | ACGGA | 2 cut(s) | 155, 887 |
| TspRI | CASTG | 3 cut(s) | 456, 683, 927 |
| Tth111I | GACNNNGTC | 2 cut(s) | 152, 850 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 87, 464 |
| VpaK11BI | GGWCC | 2 cut(s) | 163, 256 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 997 |
| XapI | RAATTY | 3 cut(s) | 19, 857, 983 |
| XceI | RCATGY | 1 cut(s) | 836 |
| XmnI | GAANNNNTTC | 1 cut(s) | 711 |
| XspI | CTAG | 5 cut(s) | 414, 510, 581, 597, 765 |