MD14G1074700.v1.1

Mitochondrial

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
8485248 .. 8494569
9322 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1074700.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGGGGTTAGGGTCAAAAGGGTTGGTGAAGAAGGGGATGATGGGGTTGGGAGAGATGGGTTTCAACACCGGAGGCGGAGCCATCAATTGGTTCCCAGGCCACATGGCTGCCGCCACACGGGCCATCCGCGATCGCCTCAAGCTCGCCGACTTCGTTATCGAGGTCCGCGACGCTCGGATTCCACTGTCCTCTGCCAACCAAGACCTCCAGCCCCAACTCCGCGCCAAACGCTCCCTCATTGTCCTCAACAAGAAGGACCTCGCCAATACCAATATCATGCAAAAATGGACTCGGTTTTTCGAATCGTCCAAGCAAGATTGCCTTCCTATAAATGCACATAGCAGGAGTTCCGTTTCCAAGCTTCTCGACCTGGTGGAGTATAAGCTGAAGGAAGCGATTTCGAGGGAACCTACTCTGCTTGTTATGGTGGTTGGTGTTCCTAATGTTGGGAAATCAGCTCTAATCAATAATATTCATCGGATTGCATCATCTCGCTTTCCCGTTCAGGGGAAGATGAAGCGCGCTACAGTGGGTCCATTGCCTGGCGTTACTCAGGACATTGCTGGATTCAAGATTGCTCATCAGCCTAGCATATATGTTCTTGACACTCCAGGTGTTTTGGTTCCAAGTATCCCTGACATAGAGACGGGGTTAAAGCTAGCTCTAGCAGGATCTATTAAGGACTCAGTGGTAGGGGAGGATCGAATTGCTCAATACTTACTCGCAGTTCTAAATTCAAGAGGGACGCCTTTTCACTGGAAATACTCAAATACTAGGAGAATGGAAGGGATTCAATATGAAGCCGAGGGAAAAATTGGTTACAGCCTTAAGAACCTTCGACCTAATAGAAGGAAGGTGCCAAATAAGTCCGATGTGCTGTACATTGAGGATATGGTAACCGAAGTGCAACGTGCACTGTATTCAACTCTGTCAGAATTCAATGGCAACCCAGAAGATGAGAGCGACTTGGAGATACTTATTGAGCAGCAGTTTGAAGCACTGCAAACGGCCTTAAAGATACCTAATAAGGGGTCTGAAGCGCGTTTGATGGTATCAAAGAAATTTCTTACATTATTTAGGTCAGGCAAGTTGGGTACTTTCATCCTCGATGATGTCCCCGATGATAATCCGCCGTCATGA

Protein Analysis

380

Amino Acids

41.9

Weight (kDa)

9.53

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 141 - 214 6.8e-12 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 856
AccB7I CCANNNNNTGG 2 cut(s) 87, 542
AccII CGCG 5 cut(s) 129, 168, 222, 522, 1042
AciI CCGC 6 cut(s) 75, 111, 127, 166, 220, 1130
AclWI GGATC 2 cut(s) 679, 708
AcsI RAATTY 3 cut(s) 733, 935, 1061
AcuI CTGAAG 2 cut(s) 407, 1056
AcyI GRCGYC 1 cut(s) 746
AfaI GTAC 2 cut(s) 881, 1096
AfiI CCNNNNNNNGG 7 cut(s) 87, 117, 446, 506, 507, 542, 1028
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 7 cut(s) 64, 571, 738, 794, 924, 940, 995
AjnI CCWGG 4 cut(s) 94, 369, 541, 610
AluBI AGCT 6 cut(s) 142, 361, 385, 458, 658, 662
AluI AGCT 6 cut(s) 142, 361, 385, 458, 658, 662
Alw21I GWGCWC 1 cut(s) 916
Alw26I GTCTC 1 cut(s) 638
Alw44I GTGCAC 1 cut(s) 912
AlwI GGATC 2 cut(s) 679, 708
AoxI GGCC 3 cut(s) 97, 120, 1008
ApaLI GTGCAC 1 cut(s) 912
ApeKI GCWGC 2 cut(s) 107, 985
ApoI RAATTY 3 cut(s) 733, 935, 1061
AsiSI GCGATCGC 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 4 cut(s) 224, 522, 524, 1042
AspS9I GGNCC 4 cut(s) 120, 163, 256, 533
AsuHPI GGTGA 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 300
AsuNHI GCTAGC 1 cut(s) 658
AvaII GGWCC 3 cut(s) 163, 256, 533
BaeGI GKGCMC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 856
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 2 cut(s) 94, 997
BccI CCATC 5 cut(s) 34, 49, 89, 131, 1042
BceAI ACGGC 2 cut(s) 1023, 1117
BciT130I CCWGG 4 cut(s) 96, 371, 543, 612
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 4 cut(s) 588, 659, 665, 774
BfmI CTRYAG 1 cut(s) 525
BfrI CTTAAG 1 cut(s) 827
BfuI GTATCC 1 cut(s) 641
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 3 cut(s) 108, 111, 986
BlsI GCNGC 3 cut(s) 109, 112, 987
Bme1390I CCNGG 4 cut(s) 96, 371, 543, 612
Bme18I GGWCC 3 cut(s) 163, 256, 533
BmgT120I GGNCC 4 cut(s) 120, 163, 256, 533
BmiI GGNNCC 6 cut(s) 79, 92, 408, 534, 624, 858
BmrFI CCNGG 4 cut(s) 96, 371, 543, 612
BmsI GCATC 1 cut(s) 494
BmtI GCTAGC 1 cut(s) 662
BpmI CTGGAG 2 cut(s) 191, 594
Bpu14I TTCGAA 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 746
BsaJI CCNNGG 2 cut(s) 94, 804
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 7 cut(s) 87, 117, 446, 506, 507, 542, 1028
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 2 cut(s) 536, 558
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 4 cut(s) 96, 371, 543, 612
BseDI CCNNGG 2 cut(s) 94, 804
BseGI GGATG 3 cut(s) 42, 123, 1101
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 7 cut(s) 87, 117, 446, 506, 507, 542, 1028
BseMI GCAATG 2 cut(s) 536, 558
BseMII CTCAG 2 cut(s) 566, 699
BseNI ACTGG 1 cut(s) 761
BsePI GCGCGC 1 cut(s) 520
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 2 cut(s) 94, 997
Bsh1236I CGCG 5 cut(s) 129, 168, 222, 522, 1042
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 3 cut(s) 99, 122, 1010
BshNI GGYRCC 1 cut(s) 856
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 916
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 757, 1100
BslI CCNNNNNNNGG 7 cut(s) 87, 117, 446, 506, 507, 542, 1028
BsmAI GTCTC 1 cut(s) 638
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 2 cut(s) 757, 1100
BsnI GGCC 3 cut(s) 99, 122, 1010
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 916
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 3 cut(s) 130, 671, 700
BspACI CCGC 6 cut(s) 75, 111, 127, 166, 220, 1130
BspANI GGCC 3 cut(s) 99, 122, 1010
BspCNI CTCAG 2 cut(s) 565, 698
BspFNI CGCG 5 cut(s) 129, 168, 222, 522, 1042
BspHI TCATGA 1 cut(s) 1136
BspLI GGNNCC 6 cut(s) 79, 92, 408, 534, 624, 858
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 2 cut(s) 679, 708
BspT104I TTCGAA 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 856
BspTI CTTAAG 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 536, 558
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 2 cut(s) 94, 804
BssHII GCGCGC 1 cut(s) 520
BssMI GATC 3 cut(s) 130, 671, 700
BssNI GRCGYC 1 cut(s) 746
Bst2UI CCWGG 4 cut(s) 96, 371, 543, 612
Bst4CI ACNGT 3 cut(s) 186, 529, 918
BstACI GRCGYC 1 cut(s) 746
BstAFI CTTAAG 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 879
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 144, 522, 660
BstDEI CTNAG 2 cut(s) 552, 685
BstEII GGTNACC 1 cut(s) 895
BstF5I GGATG 3 cut(s) 42, 123, 1101
BstFNI CGCG 5 cut(s) 129, 168, 222, 522, 1042
BstHHI GCGC 4 cut(s) 224, 522, 524, 1042
BstKTI GATC 3 cut(s) 133, 674, 703
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 3 cut(s) 130, 671, 700
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 119, 228
BstNI CCWGG 4 cut(s) 96, 371, 543, 612
BstPI GGTNACC 1 cut(s) 895
BstSCI CCNGG 4 cut(s) 94, 369, 541, 610
BstSFI CTRYAG 1 cut(s) 525
BstSLI GKGCMC 1 cut(s) 916
BstUI CGCG 5 cut(s) 129, 168, 222, 522, 1042
BstV1I GCAGC 2 cut(s) 94, 997
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 3 cut(s) 99, 122, 1010
BtsCI GGATG 3 cut(s) 42, 123, 1101
BtsI GCAGTG 1 cut(s) 998
BtsIMutI CAGTG 6 cut(s) 182, 534, 693, 754, 914, 998
Cac8I GCNNGC 3 cut(s) 144, 522, 660
CciI TCATGA 1 cut(s) 1136
CfoI GCGC 4 cut(s) 224, 522, 524, 1042
Cfr13I GGNCC 4 cut(s) 120, 163, 256, 533
CseI GACGC 2 cut(s) 179, 754
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 2 cut(s) 880, 1095
CviAII CATG 3 cut(s) 103, 277, 1137
CviQI GTAC 2 cut(s) 880, 1095
DdeI CTNAG 2 cut(s) 552, 685
DpnI GATC 3 cut(s) 132, 673, 702
DpnII GATC 3 cut(s) 130, 671, 700
EciI GGCGGA 2 cut(s) 90, 1119
Eco47I GGWCC 3 cut(s) 163, 256, 533
Eco57I CTGAAG 2 cut(s) 407, 1056
Eco91I GGTNACC 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 895
EcoRI GAATTC 1 cut(s) 935
EcoRII CCWGG 4 cut(s) 94, 369, 541, 610
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 3 cut(s) 106, 280, 1140
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 2 cut(s) 757, 1100
FatI CATG 3 cut(s) 102, 276, 1136
Fnu4HI GCNGC 3 cut(s) 108, 111, 986
FokI GGATG 3 cut(s) 49, 110, 1088
Fsp4HI GCNGC 3 cut(s) 108, 111, 986
FspBI CTAG 4 cut(s) 588, 659, 665, 774
GlaI GCGC 4 cut(s) 223, 521, 523, 1041
GluI GCNGC 3 cut(s) 108, 111, 986
GsuI CTGGAG 2 cut(s) 191, 594
HaeIII GGCC 3 cut(s) 99, 122, 1010
HapII CCGG 1 cut(s) 69
HgaI GACGC 2 cut(s) 179, 754
HhaI GCGC 4 cut(s) 224, 522, 524, 1042
Hin1I GRCGYC 1 cut(s) 746
Hin1II CATG 3 cut(s) 106, 280, 1140
Hin6I GCGC 4 cut(s) 222, 520, 522, 1040
HinP1I GCGC 4 cut(s) 222, 520, 522, 1040
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 6 cut(s) 178, 289, 302, 567, 683, 790
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 914
Hpy188I TCNGA 5 cut(s) 177, 480, 871, 934, 1036
Hpy188III TCNNGA 6 cut(s) 365, 554, 571, 602, 738, 1137
Hpy8I GTNNAC 1 cut(s) 914
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 8 cut(s) 25, 247, 332, 382, 779, 843, 845, 847
HpyCH4III ACNGT 3 cut(s) 186, 529, 918
HpyCH4IV ACGT 1 cut(s) 910
HpyCH4V TGCA 6 cut(s) 280, 335, 485, 907, 914, 1003
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 228
HpyF3I CTNAG 2 cut(s) 552, 685
HpySE526I ACGT 1 cut(s) 910
Hsp92I GRCGYC 1 cut(s) 746
Hsp92II CATG 3 cut(s) 106, 280, 1140
HspAI GCGC 4 cut(s) 222, 520, 522, 1040
Kzo9I GATC 3 cut(s) 130, 671, 700
LmnI GCTCC 2 cut(s) 77, 236
Lsp1109I GCAGC 2 cut(s) 94, 997
LweI GCATC 1 cut(s) 494
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 4 cut(s) 588, 659, 665, 774
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 3 cut(s) 547, 818, 895
MalI GATC 3 cut(s) 132, 673, 702
MboI GATC 3 cut(s) 130, 671, 700
MboII GAAGA 3 cut(s) 40, 523, 965
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 1 cut(s) 916
MluCI AATT 6 cut(s) 85, 705, 733, 813, 935, 1061
MlyI GAGTC 2 cut(s) 283, 677
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 4 cut(s) 653, 678, 828, 1013
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 4 cut(s) 96, 371, 543, 612
MunI CAATTG 1 cut(s) 85
MvaI CCWGG 4 cut(s) 96, 371, 543, 612
MvnI CGCG 5 cut(s) 129, 168, 222, 522, 1042
MwoI GCNNNNNNNGC 2 cut(s) 119, 228
NdeII GATC 3 cut(s) 130, 671, 700
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 3 cut(s) 106, 280, 1140
NlaIV GGNNCC 6 cut(s) 79, 92, 408, 534, 624, 858
NmeAIII GCCGAG 1 cut(s) 829
NspV TTCGAA 1 cut(s) 300
PagI TCATGA 1 cut(s) 1136
PauI GCGCGC 1 cut(s) 520
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 165
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 4 cut(s) 178, 302, 567, 790
PflMI CCANNNNNTGG 2 cut(s) 87, 542
PkrI GCNGC 3 cut(s) 109, 112, 987
Ple19I CGATCG 1 cut(s) 133
PleI GAGTC 2 cut(s) 283, 677
PpsI GAGTC 2 cut(s) 283, 677
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 4 cut(s) 94, 369, 541, 610
PspEI GGTNACC 1 cut(s) 895
PspGI CCWGG 4 cut(s) 94, 369, 541, 610
PspN4I GGNNCC 6 cut(s) 79, 92, 408, 534, 624, 858
PspPI GGNCC 4 cut(s) 120, 163, 256, 533
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 671
PteI GCGCGC 1 cut(s) 520
PvuI CGATCG 1 cut(s) 133
RgaI GCGATCGC 1 cut(s) 133
RsaI GTAC 2 cut(s) 881, 1096
RsaNI GTAC 2 cut(s) 880, 1095
SaqAI TTAA 4 cut(s) 653, 678, 828, 1013
SatI GCNGC 3 cut(s) 108, 111, 986
Sau3AI GATC 3 cut(s) 130, 671, 700
Sau96I GGNCC 4 cut(s) 120, 163, 256, 533
SchI GAGTC 2 cut(s) 283, 677
ScrFI CCNGG 4 cut(s) 96, 371, 543, 612
SduI GDGCHC 1 cut(s) 916
SexAI ACCWGGT 1 cut(s) 369
SfaAI GCGATCGC 1 cut(s) 133
SfaNI GCATC 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 300
SgfI GCGATCGC 1 cut(s) 133
SinI GGWCC 3 cut(s) 163, 256, 533
SmlI CTYRAG 2 cut(s) 137, 827
SmoI CTYRAG 2 cut(s) 137, 827
Sse9I AATT 6 cut(s) 85, 705, 733, 813, 935, 1061
SsiI CCGC 6 cut(s) 75, 111, 127, 166, 220, 1130
SspI AATATT 1 cut(s) 472
SspMI CTAG 4 cut(s) 588, 659, 665, 774
StyD4I CCNGG 4 cut(s) 94, 369, 541, 610
TaaI ACNGT 3 cut(s) 186, 529, 918
TaiI ACGT 1 cut(s) 913
TaqI TCGA 7 cut(s) 159, 300, 366, 401, 703, 838, 1107
TasI AATT 6 cut(s) 85, 705, 733, 813, 935, 1061
TatI WGTACW 1 cut(s) 879
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 4 cut(s) 178, 302, 567, 790
Tru1I TTAA 4 cut(s) 653, 678, 828, 1013
Tru9I TTAA 4 cut(s) 653, 678, 828, 1013
TscAI CASTG 6 cut(s) 189, 534, 693, 761, 921, 1005
TseI GCWGC 2 cut(s) 107, 985
TspDTI ATGAA 4 cut(s) 464, 530, 813, 1090
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 6 cut(s) 189, 534, 693, 761, 921, 1005
Van91I CCANNNNNTGG 2 cut(s) 87, 542
Vha464I CTTAAG 1 cut(s) 827
VneI GTGCAC 1 cut(s) 912
VpaK11BI GGWCC 3 cut(s) 163, 256, 533
XapI RAATTY 3 cut(s) 733, 935, 1061
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 4 cut(s) 588, 659, 665, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.