Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

17791692 .. 17793142

Gene Structure 1451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTTTTGGAACAATTGAGTGGTCAGACTCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTATCAGACGTAACGAGAAGATCGCATGCTATGTAACCGTCAGAGGTGAGAAGGCAATGCAACTACTTGAAAGTGGATTGAAAGTCAAGGAATACGAACTTCTCAGAAGAAACTTCAGTGACACTGGTTGCTTCGGTTTTGGTATTCAAGAACACATTGATTTGGGTATCAAGTACGATCCATCAACTGGAATCTATGGTATGGACTTCTATGTGGTCCTAGAACGTCCTGGCTACCGTGTAGCACGTCGCAGAAGGTGCAAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGATGCAATGAAATGGTTCCAGGTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

182

Amino Acids

20.83

Weight (kDa)

9.94

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.1e-20	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	1.2e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AclWI	GGATC	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	34, 365
AgsI	TTSAA	3 cut(s)	248, 259, 326
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	406, 495
AluBI	AGCT	3 cut(s)	19, 55, 155
AluI	AGCT	3 cut(s)	19, 55, 155
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	4 cut(s)	88, 89, 236, 511
AvaII	GGWCC	1 cut(s)	394
BauI	CACGAG	1 cut(s)	444
BccI	CCATC	1 cut(s)	367
BciT130I	CCWGG	2 cut(s)	408, 497
BciVI	GTATCC	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	156, 398
BfuI	GTATCC	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	408, 497
Bme18I	GGWCC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	2 cut(s)	408, 497
BmsI	GCATC	1 cut(s)	469
BplI	GAGNNNNNCTC	4 cut(s)	78, 110, 504, 536
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 365
Bse1I	ACTGG	3 cut(s)	307, 370, 547
Bse3DI	GCAATG	2 cut(s)	240, 489
BseBI	CCWGG	2 cut(s)	408, 497
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	34, 365
BseMI	GCAATG	2 cut(s)	240, 489
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	3 cut(s)	307, 370, 547
BsgI	GTGCAG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	50, 514
BslI	CCNNNNNNNGG	2 cut(s)	34, 365
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	50, 514
Bsp143I	GATC	3 cut(s)	88, 198, 355
BspCNI	CTCAG	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	2 cut(s)	240, 489
BsrI	ACTGG	3 cut(s)	307, 370, 547
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	88, 198, 355
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	408, 497
Bst4CI	ACNGT	3 cut(s)	166, 217, 416
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	281
BstKTI	GATC	3 cut(s)	91, 201, 358
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	88, 198, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	2 cut(s)	408, 497
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	406, 495
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	464
BtrI	CACGTC	1 cut(s)	425
BtsIMutI	CAGTG	4 cut(s)	162, 300, 301, 540
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	7 cut(s)	19, 55, 104, 155, 411, 443, 546
CviKI_1	RGCY	7 cut(s)	19, 55, 104, 155, 411, 443, 546
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	3 cut(s)	90, 200, 357
DpnII	GATC	3 cut(s)	88, 198, 355
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	406, 495
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	207
FaiI	YATR	5 cut(s)	205, 210, 375, 380, 390
FaqI	GGGAC	2 cut(s)	50, 514
FatI	CATG	1 cut(s)	203
FspBI	CTAG	2 cut(s)	156, 398
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	207
HinfI	GANTC	3 cut(s)	136, 369, 513
HphI	GGTGA	4 cut(s)	88, 89, 236, 511
Hpy188I	TCNGA	5 cut(s)	10, 135, 185, 221, 284
Hpy188III	TCNNGA	1 cut(s)	326
Hpy99I	CGWCG	2 cut(s)	10, 429
HpyAV	CCTTC	3 cut(s)	223, 426, 503
HpyCH4III	ACNGT	3 cut(s)	166, 217, 416
HpyCH4IV	ACGT	3 cut(s)	187, 403, 424
HpyCH4V	TGCA	4 cut(s)	49, 238, 438, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	3 cut(s)	187, 403, 424
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	88, 198, 355
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	156, 398
MaeII	ACGT	3 cut(s)	187, 403, 424
MaeIII	GTNAC	4 cut(s)	188, 211, 296, 466
MalI	GATC	3 cut(s)	90, 200, 357
MboI	GATC	3 cut(s)	88, 198, 355
MboII	GAAGA	3 cut(s)	25, 208, 297
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	130, 522
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	27, 115, 215
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	408, 497
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	408, 497
MwoI	GCNNNNNNNGC	1 cut(s)	435
NdeII	GATC	3 cut(s)	88, 198, 355
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	207
PaeI	GCATGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	369
PflMI	CCANNNNNTGG	1 cut(s)	365
PleI	GAGTC	2 cut(s)	130, 521
PpsI	GAGTC	2 cut(s)	130, 521
Psp6I	CCWGG	2 cut(s)	406, 495
PspGI	CCWGG	2 cut(s)	406, 495
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	88, 198, 355
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	2 cut(s)	130, 522
ScrFI	CCNGG	2 cut(s)	408, 497
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	207
Sse9I	AATT	1 cut(s)	122
SspMI	CTAG	2 cut(s)	156, 398
StyD4I	CCNGG	2 cut(s)	406, 495
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	166, 217, 416
TaiI	ACGT	3 cut(s)	190, 406, 427
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	4 cut(s)	169, 301, 307, 547
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	4 cut(s)	169, 301, 307, 547
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	2 cut(s)	156, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.