Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

21307802 .. 21312331

Gene Structure 4530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028308

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCAAGTTTCAGTAGAGTCGGACACGGAGAAATCCAGCTCTTACTCCATCTCAAATTCGAATCCTACCACCGAGCCTGGTACCCTCATTCTCTCTATTCATCTCTATCTCTTCTTCTTCTTCTTTGGAAAAGTCTCCGCCTTTCTCTCTCAAATTCTCATCCCTATTCACACAATCCAAGTTGCTTGTTTCCTCAAATTCGACAGAGACAGAGACTGGCGACAAGCTATACCTTCGGGAGAGGACTTCTATTACTACCGCAATTTCGACGAATTCAAGGATTTGGATTTGGAGGACGCCTACGATTGGCTGGTTAATGTCAACGATGAGATCCTGGAGAGGGTGGACGTATCAGTGGACGAGTTTAAAAGGAGCAGCAGTAGCAAGGAGAAGGAAGACGAGGGCGTCGGAGAACCCCATGAGGGAAATCAAGGTCTAGAAGCTCGTCCTCAACATCTCTGTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTGAAGCAACTCAGCGTCCAGACCCCTGTTTTCTCCAAAGGCGTAATGAGAAGATCGCTTGCTATCTTACTGTTAGGGGAGAGAAGGCAATGTCACTGTTGGAGAGTGGGCTGAAGGGGAAGGAGTATGAGCTTTTGCGTAAGAACTTTAGTGATACTGGCTGCTTTGGATTCGGTATTCAGGAGCATATCGATCTTGGAATTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

237

Amino Acids

27.26

Weight (kDa)

5.18

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5_C	PF00673	185 - 233	1.8e-06	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	472
AciI	CCGC	4 cut(s)	138, 259, 472, 493
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	4 cut(s)	55, 153, 197, 272
AcuI	CTGAAG	1 cut(s)	635
AcyI	GRCGYC	2 cut(s)	297, 405
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	306, 340, 422
AgsI	TTSAA	2 cut(s)	277, 506
AjnI	CCWGG	2 cut(s)	76, 333
AluBI	AGCT	4 cut(s)	39, 227, 443, 634
AluI	AGCT	4 cut(s)	39, 227, 443, 634
Alw26I	GTCTC	4 cut(s)	139, 201, 207, 486
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	216
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	375, 663
ApoI	RAATTY	4 cut(s)	55, 153, 197, 272
Asp718I	GGTACC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	476
AsuII	TTCGAA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	387, 650
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	78, 335
BcoDI	GTCTC	4 cut(s)	139, 201, 207, 486
BfaI	CTAG	1 cut(s)	437
BisI	GCNGC	4 cut(s)	376, 473, 493, 664
BlsI	GCNGC	4 cut(s)	377, 474, 494, 665
Bme1390I	CCNGG	2 cut(s)	78, 335
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	2 cut(s)	78, 335
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	356
Bpu14I	TTCGAA	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	693
BsaHI	GRCGYC	2 cut(s)	297, 405
BsaJI	CCNNGG	2 cut(s)	487, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 340, 422
Bse1I	ACTGG	2 cut(s)	221, 664
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	78, 335
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	487, 496
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	306, 340, 422
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	2 cut(s)	221, 664
BseXI	GCAGC	2 cut(s)	387, 650
Bsh1285I	CGRYCG	1 cut(s)	479
BshFI	GGCC	1 cut(s)	492
BshNI	GGYRCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	693
BsiEI	CGRYCG	1 cut(s)	479
BslI	CCNNNNNNNGG	3 cut(s)	306, 340, 422
BsmAI	GTCTC	4 cut(s)	139, 201, 207, 486
BsmBI	CGTCTC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	492
Bsp119I	TTCGAA	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	330, 476, 555, 694
BspACI	CCGC	4 cut(s)	138, 259, 472, 493
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	1 cut(s)	526
BspDI	ATCGAT	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	221, 664
BssECI	CCNNGG	2 cut(s)	487, 496
BssMI	GATC	4 cut(s)	330, 476, 555, 694
BssNI	GRCGYC	2 cut(s)	297, 405
BssT1I	CCWWGG	2 cut(s)	487, 496
Bst2UI	CCWGG	2 cut(s)	78, 335
Bst4CI	ACNGT	2 cut(s)	574, 600
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	2 cut(s)	297, 405
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	4 cut(s)	333, 479, 558, 697
BstMAI	GTCTC	4 cut(s)	139, 201, 207, 486
BstMBI	GATC	4 cut(s)	330, 476, 555, 694
BstMCI	CGRYCG	1 cut(s)	479
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 472
BstNI	CCWGG	2 cut(s)	78, 335
BstSCI	CCNGG	2 cut(s)	76, 333
BstV1I	GCAGC	2 cut(s)	387, 650
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	492
BsuTUI	ATCGAT	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	360, 596
Cac8I	GCNNGC	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	693
CseI	GACGC	3 cut(s)	305, 394, 506
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	9 cut(s)	39, 76, 227, 310, 443, 492, 613, 634, 663
CviKI_1	RGCY	9 cut(s)	39, 76, 227, 310, 443, 492, 613, 634, 663
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	4 cut(s)	332, 478, 557, 696
DpnII	GATC	4 cut(s)	330, 476, 555, 694
DraI	TTTAAA	1 cut(s)	367
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	487, 496
Eco57I	CTGAAG	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	76, 333
EcoT14I	CCWWGG	2 cut(s)	487, 496
ErhI	CCWWGG	2 cut(s)	487, 496
Esp3I	CGTCTC	1 cut(s)	486
FaeI	CATG	1 cut(s)	422
FaiI	YATR	4 cut(s)	230, 420, 630, 690
FatI	CATG	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	376, 473, 493, 664
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	376, 473, 493, 664
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	4 cut(s)	376, 473, 493, 664
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	492
HgaI	GACGC	3 cut(s)	305, 394, 506
Hin1I	GRCGYC	2 cut(s)	297, 405
Hin1II	CATG	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	3 cut(s)	17, 61, 672
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	3 cut(s)	322, 346, 358
Hpy188I	TCNGA	2 cut(s)	22, 410
Hpy188III	TCNNGA	5 cut(s)	237, 437, 503, 521, 683
Hpy8I	GTNNAC	3 cut(s)	322, 346, 358
Hpy99I	CGWCG	2 cut(s)	272, 410
HpyAV	CCTTC	5 cut(s)	243, 385, 580, 610, 616
HpyCH4III	ACNGT	2 cut(s)	574, 600
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 472
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	2 cut(s)	297, 405
Hsp92II	CATG	1 cut(s)	422
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	330, 476, 555, 694
LmnI	GCTCC	2 cut(s)	372, 685
Lsp1109I	GCAGC	2 cut(s)	387, 650
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	4 cut(s)	332, 478, 557, 696
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	4 cut(s)	330, 476, 555, 694
MboII	GAAGA	6 cut(s)	103, 106, 109, 112, 407, 565
MflI	RGATCY	1 cut(s)	330
MluCI	AATT	6 cut(s)	55, 153, 197, 262, 272, 702
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	388, 582
MnlI	CCTC	8 cut(s)	95, 203, 235, 286, 333, 394, 415, 459
MseI	TTAA	3 cut(s)	315, 366, 705
MspR9I	CCNGG	2 cut(s)	78, 335
MvaI	CCWGG	2 cut(s)	78, 335
MwoI	GCNNNNNNNGC	2 cut(s)	381, 472
NdeII	GATC	4 cut(s)	330, 476, 555, 694
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	594
NspV	TTCGAA	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	61, 672
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	4 cut(s)	377, 474, 494, 665
Ple19I	CGATCG	1 cut(s)	479
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	76, 333
PspGI	CCWGG	2 cut(s)	76, 333
PspN4I	GGNNCC	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	330
PvuI	CGATCG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	315, 366, 705
SatI	GCNGC	4 cut(s)	376, 473, 493, 664
Sau3AI	GATC	4 cut(s)	330, 476, 555, 694
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	78, 335
SetI	ASST	8 cut(s)	41, 229, 235, 351, 436, 445, 502, 636
SfuI	TTCGAA	1 cut(s)	59
Sse9I	AATT	6 cut(s)	55, 153, 197, 262, 272, 702
SsiI	CCGC	4 cut(s)	138, 259, 472, 493
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	76, 333
StyI	CCWWGG	2 cut(s)	487, 496
TaaI	ACNGT	2 cut(s)	574, 600
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	4 cut(s)	59, 201, 267, 693
TasI	AATT	6 cut(s)	55, 153, 197, 262, 272, 702
TauI	GCSGC	2 cut(s)	475, 495
TfiI	GAWTC	2 cut(s)	61, 672
Tru1I	TTAA	3 cut(s)	315, 366, 705
Tru9I	TTAA	3 cut(s)	315, 366, 705
TscAI	CASTG	2 cut(s)	360, 603
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	2 cut(s)	375, 663
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	360, 603
XapI	RAATTY	4 cut(s)	55, 153, 197, 272
XbaI	TCTAGA	1 cut(s)	436
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.