Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

43209237 .. 43211257

Gene Structure 2021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTCGGAGAAGAAGTTAGCGAACCCTATGAGGGAAATCAAGGTCCAGAAGCTGGTCCTCAACATCTCTGTAGGCGAGAGCGGTGATCGACTCACCAGAGCCGCGAAGGTGTTGGAGCAACTCAGTGGCCAAACCCCTGTTTTTTCCAAAGCAAGGTACACTGTTCGGAGCTTTGGCATCAGGCGTAATGAGAAGATTGCCTGCTACGTCACTGTCAGGGGTGAAAAGGCCATGTCACTTCTGGAGAGTGGGTTGAAGGTCAAGGAATACGAGTTGCTCCGAAAGAACTTTAGTGATACTGGTTGCTTTGGCTTTGGTATCCAGGAGCACATTGATCTGGGAATCAAGTATGATCCTTCTACTGGTATTTATGGAATGGATTTCTATGTTGTTTTGGAGCGCCCCGGTTATCGTGTGGGTCGTCGTCGTAGATGCAAGTCTCGTGTTGGGATCCAGCACAGGGTCACGAAGGAGGATTCCATGAAGTGGTTCCAGGTCAAGTATGAGGGTGTGATCCTTAACAAGTCCCAGCAAATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

181

Amino Acids

20.72

Weight (kDa)

9.91

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.9e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	1.3e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	55, 489
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	84, 105
AclWI	GGATC	4 cut(s)	350, 448, 461, 511
AcoI	YGGCCR	1 cut(s)	130
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	324, 495
AluBI	AGCT	2 cut(s)	55, 174
AluI	AGCT	2 cut(s)	55, 174
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	4 cut(s)	350, 448, 461, 511
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	130, 231
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	46, 58
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	88, 98, 236
AvaII	GGWCC	2 cut(s)	46, 58
BalI	TGGCCA	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	333
BciT130I	CCWGG	2 cut(s)	326, 497
BciVI	GTATCC	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	3 cut(s)	326, 408, 497
Bme18I	GGWCC	2 cut(s)	46, 58
BmgT120I	GGNCC	2 cut(s)	46, 58
BmiI	GGNNCC	2 cut(s)	455, 494
BmrFI	CCNGG	3 cut(s)	326, 408, 497
BmsI	GCATC	2 cut(s)	189, 425
BpmI	CTGGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 239, 269
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
Bse1I	ACTGG	2 cut(s)	307, 370
BseBI	CCWGG	2 cut(s)	326, 497
BseDI	CCNNGG	1 cut(s)	406
BseLI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	307, 370
BseYI	CCCAGC	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	132, 233
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	132, 233
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	88, 337, 355, 453, 516
BspACI	CCGC	2 cut(s)	84, 105
BspANI	GGCC	2 cut(s)	132, 233
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	455, 494
BspPI	GGATC	4 cut(s)	350, 448, 461, 511
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	307, 370
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	5 cut(s)	88, 337, 355, 453, 516
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	326, 497
Bst4CI	ACNGT	2 cut(s)	166, 217
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	125, 543
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	5 cut(s)	91, 340, 358, 456, 519
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	5 cut(s)	88, 337, 355, 453, 516
BstNI	CCWGG	2 cut(s)	326, 497
BstSCI	CCNGG	3 cut(s)	324, 406, 495
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	132, 233
BtsIMutI	CAGTG	3 cut(s)	133, 162, 213
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	46, 58
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	2 cut(s)	235, 484
CviJI	RGCY	7 cut(s)	5, 55, 104, 132, 174, 233, 315
CviKI_1	RGCY	7 cut(s)	5, 55, 104, 132, 174, 233, 315
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	125, 543
DpnI	GATC	5 cut(s)	90, 339, 357, 455, 518
DpnII	GATC	5 cut(s)	88, 337, 355, 453, 516
EaeI	YGGCCR	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	46, 58
EcoRII	CCWGG	2 cut(s)	324, 495
FaeI	CATG	2 cut(s)	238, 487
FaiI	YATR	7 cut(s)	32, 236, 354, 375, 390, 485, 507
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	2 cut(s)	234, 483
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	535
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	132, 233
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	238, 487
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	93, 345, 479
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	3 cut(s)	88, 98, 236
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	10, 171, 284
Hpy188III	TCNNGA	3 cut(s)	49, 245, 469
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	2 cut(s)	429, 432
HpyAV	CCTTC	4 cut(s)	103, 253, 369, 466
HpyCH4III	ACNGT	2 cut(s)	166, 217
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	438
HpyF3I	CTNAG	2 cut(s)	125, 543
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	238, 487
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	88, 337, 355, 453, 516
LmnI	GCTCC	5 cut(s)	118, 171, 285, 328, 400
LweI	GCATC	2 cut(s)	189, 425
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	211, 237, 466
MalI	GATC	5 cut(s)	90, 339, 357, 455, 518
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	5 cut(s)	88, 337, 355, 453, 516
MboII	GAAGA	2 cut(s)	25, 208
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	27, 71, 469, 502
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	3 cut(s)	326, 408, 497
MvaI	CCWGG	2 cut(s)	326, 497
MvnI	CGCG	1 cut(s)	107
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	88, 337, 355, 453, 516
NlaIII	CATG	2 cut(s)	238, 487
NlaIV	GGNNCC	2 cut(s)	455, 494
NmuCI	GTSAC	3 cut(s)	211, 237, 466
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	345, 479
PflMI	CCANNNNNTGG	2 cut(s)	55, 489
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	324, 495
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	2 cut(s)	324, 495
PspN4I	GGNNCC	2 cut(s)	455, 494
PspPI	GGNCC	2 cut(s)	46, 58
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	5 cut(s)	88, 337, 355, 453, 516
Sau96I	GGNCC	2 cut(s)	46, 58
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	326, 408, 497
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	8 cut(s)	48, 57, 114, 161, 176, 213, 264, 501
SfaNI	GCATC	2 cut(s)	189, 425
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	46, 58
SsiI	CCGC	2 cut(s)	84, 105
StyD4I	CCNGG	3 cut(s)	324, 406, 495
TaaI	ACNGT	2 cut(s)	166, 217
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	91
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	345, 479
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	3 cut(s)	133, 169, 220
TseFI	GTSAC	3 cut(s)	211, 237, 466
Tsp45I	GTSAC	3 cut(s)	211, 237, 466
TspDTI	ATGAA	1 cut(s)	500
TspRI	CASTG	3 cut(s)	133, 169, 220
Van91I	CCANNNNNTGG	2 cut(s)	55, 489
VpaK11BI	GGWCC	2 cut(s)	46, 58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.