Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

21711445 .. 21713104

Gene Structure 1660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACTCCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATAAGACGTAATGAGAAGATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGATTGAAAGTTAAAGAATACGAACTCTTGAGAAGGAACTTCAGCGACACTGGTTGCTTTGGTTTTGGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCGACTGGAATCTACGGCATGGACTTCTATGTTGTTCTTGAGCGACCAGGTTACCGTGTTGCGCGCCGCAGAAGATGCAAGACTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAGGTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATCACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

182

Amino Acids

20.86

Weight (kDa)

9.94

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.1e-20	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	1.2e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	365, 489
AccII	CGCG	1 cut(s)	424
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	34, 365, 489
AgsI	TTSAA	2 cut(s)	259, 326
AjnI	CCWGG	2 cut(s)	406, 495
AluBI	AGCT	3 cut(s)	19, 55, 241
AluI	AGCT	3 cut(s)	19, 55, 241
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	98, 534
AlwI	GGATC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	424, 426
AsuHPI	GGTGA	3 cut(s)	88, 89, 511
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	408, 497
BcoDI	GTCTC	2 cut(s)	98, 534
BisI	GCNGC	2 cut(s)	239, 427
BlsI	GCNGC	2 cut(s)	240, 428
Bme1390I	CCNGG	2 cut(s)	408, 497
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	2 cut(s)	408, 497
BmsI	GCATC	2 cut(s)	425, 469
BplI	GAGNNNNNCTC	4 cut(s)	78, 110, 504, 536
BpuEI	CTTGAG	3 cut(s)	266, 301, 419
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	108, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 365, 489
Bse1I	ACTGG	3 cut(s)	307, 370, 547
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	408, 497
BseDI	CCNNGG	2 cut(s)	108, 150
BseLI	CCNNNNNNNGG	3 cut(s)	34, 365, 489
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	3 cut(s)	307, 370, 547
BsePI	GCGCGC	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	34, 365, 489
BsmAI	GTCTC	2 cut(s)	98, 534
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	88, 355
BspACI	CCGC	1 cut(s)	427
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	3 cut(s)	307, 370, 547
BssECI	CCNNGG	2 cut(s)	108, 150
BssHII	GCGCGC	1 cut(s)	422
BssMI	GATC	2 cut(s)	88, 355
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	108, 150
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	408, 497
Bst4CI	ACNGT	3 cut(s)	166, 217, 416
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	205, 424
BstDEI	CTNAG	1 cut(s)	531
BstEII	GGTNACC	1 cut(s)	410
BstFNI	CGCG	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	424, 426
BstKTI	GATC	2 cut(s)	91, 358
BstMAI	GTCTC	2 cut(s)	98, 534
BstMBI	GATC	2 cut(s)	88, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	2 cut(s)	408, 497
BstPI	GGTNACC	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	406, 495
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	162, 300, 540
Cac8I	GCNNGC	2 cut(s)	205, 424
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	2 cut(s)	424, 426
CsiI	ACCWGGT	1 cut(s)	406
CviAII	CATG	2 cut(s)	379, 484
CviJI	RGCY	5 cut(s)	19, 55, 104, 155, 241
CviKI_1	RGCY	5 cut(s)	19, 55, 104, 155, 241
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	2 cut(s)	90, 357
DpnII	GATC	2 cut(s)	88, 355
Eco130I	CCWWGG	2 cut(s)	108, 150
Eco57I	CTGAAG	1 cut(s)	277
Eco91I	GGTNACC	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	406, 495
EcoT14I	CCWWGG	2 cut(s)	108, 150
ErhI	CCWWGG	2 cut(s)	108, 150
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	382, 487
FaiI	YATR	8 cut(s)	182, 210, 354, 380, 390, 462, 485, 507
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	378, 483
Fnu4HI	GCNGC	2 cut(s)	239, 427
Fsp4HI	GCNGC	2 cut(s)	239, 427
GlaI	GCGC	2 cut(s)	423, 425
GluI	GCNGC	2 cut(s)	239, 427
HhaI	GCGC	2 cut(s)	424, 426
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	382, 487
Hin6I	GCGC	2 cut(s)	422, 424
HinP1I	GCGC	2 cut(s)	422, 424
HinfI	GANTC	5 cut(s)	136, 369, 442, 453, 513
HphI	GGTGA	3 cut(s)	88, 89, 511
Hpy188I	TCNGA	3 cut(s)	10, 135, 534
Hpy188III	TCNNGA	3 cut(s)	280, 326, 398
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	223, 279, 503
HpyCH4III	ACNGT	3 cut(s)	166, 217, 416
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	49, 238, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	187
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	382, 487
HspAI	GCGC	2 cut(s)	422, 424
Kzo9I	GATC	2 cut(s)	88, 355
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	2 cut(s)	425, 469
MabI	ACCWGGT	1 cut(s)	406
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	211, 410, 466
MalI	GATC	2 cut(s)	90, 357
MboI	GATC	2 cut(s)	88, 355
MboII	GAAGA	3 cut(s)	25, 208, 444
MfeI	CAATTG	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	3 cut(s)	130, 436, 522
MmeI	TCCRAC	2 cut(s)	96, 430
MnlI	CCTC	2 cut(s)	27, 115
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	3 cut(s)	42, 264, 547
MslI	CAYNNNNRTG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	408, 497
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	408, 497
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	1 cut(s)	435
NdeII	GATC	2 cut(s)	88, 355
NlaIII	CATG	2 cut(s)	382, 487
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	2 cut(s)	211, 466
PauI	GCGCGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	369, 453
PflMI	CCANNNNNTGG	2 cut(s)	365, 489
PkrI	GCNGC	2 cut(s)	240, 428
PleI	GAGTC	3 cut(s)	130, 436, 521
PpsI	GAGTC	3 cut(s)	130, 436, 521
Psp6I	CCWGG	2 cut(s)	406, 495
PspEI	GGTNACC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	406, 495
PspN4I	GGNNCC	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	55
PteI	GCGCGC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	42, 264, 547
SatI	GCNGC	2 cut(s)	239, 427
Sau3AI	GATC	2 cut(s)	88, 355
SchI	GAGTC	3 cut(s)	130, 436, 522
ScrFI	CCNGG	2 cut(s)	408, 497
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	7 cut(s)	21, 57, 114, 190, 243, 412, 501
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	425, 469
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	245, 280, 398
SmoI	CTYRAG	3 cut(s)	245, 280, 398
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	406, 495
StyI	CCWWGG	2 cut(s)	108, 150
TaaI	ACNGT	3 cut(s)	166, 217, 416
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	23, 157, 362
TasI	AATT	1 cut(s)	122
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	369, 453
Tru1I	TTAA	3 cut(s)	42, 264, 547
Tru9I	TTAA	3 cut(s)	42, 264, 547
TscAI	CASTG	3 cut(s)	169, 307, 547
TseFI	GTSAC	2 cut(s)	211, 466
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	2 cut(s)	211, 466
TspDTI	ATGAA	2 cut(s)	500, 522
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	3 cut(s)	169, 307, 547
Van91I	CCANNNNNTGG	2 cut(s)	365, 489
XmnI	GAANNNNTTC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.