Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

8570952 .. 8572378

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTTAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAGGGCCGCCAAGGTCTTGGAGCAACTCAGCGGCCAGACCCCTGTTTTCTCCAAAGCTCGCTACACTGTGAGGTCTTTTGGAATCAGGCGTAATGAGAAGATCGCTTGCTATGTTACTGTTAGGGGAGATAAGGCAATGTCACTGTTGGAGAGTGGCCTGAAGGTGAAGGAGTATGAGCTTTTGCGTAAGAACTTCAGTGATACTGGCTGCTTTGGATTCGGTATTCAGGAGCATATCGATCTTGGAATTAAGTATGACCCCTCCACCGGTATCTACGGTATGGACTTCTATGTTGTTCTTGAGCGCCCAGGGTACCGTGTTGGCCGTCGTCGCAGGTGCAAGGCTCGTGTTGGAATCCAGCACAGAGTTACAAAGGATGATGCAATGAAGTGGTTCCAAGTGAAATATGAGGGAGTCATCCTTAACAAGTCCCAAGCAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

172

Amino Acids

19.53

Weight (kDa)

9.9

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	1 - 52	8.6e-20	Ribosomal protein L5
Ribosomal_L5_C	PF00673	56 - 154	2.2e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	393
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	3 cut(s)	54, 75, 99
AcoI	YGGCCR	2 cut(s)	100, 391
AcuI	CTGAAG	2 cut(s)	247, 248
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgeI	ACCGGT	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	68, 376
AluBI	AGCT	3 cut(s)	25, 125, 247
AluI	AGCT	3 cut(s)	25, 125, 247
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	4 cut(s)	72, 100, 223, 391
ApeKI	GCWGC	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	461
Asp718I	GGTACC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	16, 72
AsuHPI	GGTGA	2 cut(s)	58, 244
AvaII	GGWCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	2 cut(s)	70, 378
BcoDI	GTCTC	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	4 cut(s)	55, 75, 100, 277
BlsI	GCNGC	4 cut(s)	56, 76, 101, 278
Bme1390I	CCNGG	2 cut(s)	70, 378
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	16, 72
BmiI	GGNNCC	2 cut(s)	383, 464
BmrFI	CCNGG	2 cut(s)	70, 378
BmsI	GCATC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	69, 78, 376, 377
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	2 cut(s)	210, 459
BseBI	CCWGG	2 cut(s)	70, 378
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	4 cut(s)	69, 78, 376, 377
BseGI	GGATG	2 cut(s)	451, 486
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	2 cut(s)	210, 459
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	4 cut(s)	74, 102, 225, 393
BshNI	GGYRCC	1 cut(s)	381
BshTI	ACCGGT	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	4 cut(s)	74, 102, 225, 393
Bsp143I	GATC	3 cut(s)	58, 168, 307
BspACI	CCGC	3 cut(s)	54, 75, 99
BspANI	GGCC	4 cut(s)	74, 102, 225, 393
BspCNI	CTCAG	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	383, 464
BspMI	ACCTGC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	210, 459
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	69, 78, 376, 377
BssMI	GATC	3 cut(s)	58, 168, 307
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	70, 378
Bst4CI	ACNGT	5 cut(s)	136, 187, 213, 347, 386
BstC8I	GCNNGC	2 cut(s)	127, 175
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	451, 486
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	3 cut(s)	61, 171, 310
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	3 cut(s)	58, 168, 307
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 399
BstNI	CCWGG	2 cut(s)	70, 378
BstSCI	CCNGG	2 cut(s)	68, 376
BstV1I	GCAGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	4 cut(s)	74, 102, 225, 393
BsuTUI	ATCGAT	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	451, 486
BtsIMutI	CAGTG	3 cut(s)	132, 209, 271
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	127, 175
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	16, 72
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	382
CspAI	ACCGGT	1 cut(s)	335
CviJI	RGCY	9 cut(s)	25, 74, 102, 125, 225, 247, 276, 393, 413
CviKI_1	RGCY	9 cut(s)	25, 74, 102, 125, 225, 247, 276, 393, 413
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	60, 170, 309
DpnII	GATC	3 cut(s)	58, 168, 307
EaeI	YGGCCR	2 cut(s)	100, 391
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	247, 248
EcoRII	CCWGG	2 cut(s)	68, 376
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	68
FaiI	YATR	7 cut(s)	180, 243, 303, 324, 350, 360, 477
FaqI	GGGAC	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	55, 75, 100, 277
FokI	GGATG	2 cut(s)	458, 473
Fsp4HI	GCNGC	4 cut(s)	55, 75, 100, 277
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	4 cut(s)	55, 75, 100, 277
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	74, 102, 225, 393
HapII	CCGG	1 cut(s)	336
HhaI	GCGC	1 cut(s)	375
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HinfI	GANTC	4 cut(s)	150, 285, 423, 483
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	2 cut(s)	58, 244
Hpy188III	TCNNGA	3 cut(s)	19, 296, 368
Hpy99I	CGWCG	3 cut(s)	47, 399, 402
HpyAV	CCTTC	2 cut(s)	223, 229
HpyCH4III	ACNGT	5 cut(s)	136, 187, 213, 347, 386
HpyCH4V	TGCA	2 cut(s)	408, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 399
HpyF3I	CTNAG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	58, 168, 307
LmnI	GCTCC	2 cut(s)	88, 298
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	181, 207, 436
MalI	GATC	3 cut(s)	60, 170, 309
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	3 cut(s)	58, 168, 307
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	492
MmeI	TCCRAC	2 cut(s)	195, 400
MnlI	CCTC	3 cut(s)	132, 340, 472
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	3 cut(s)	33, 318, 492
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	70, 378
MvaI	CCWGG	2 cut(s)	70, 378
MwoI	GCNNNNNNNGC	2 cut(s)	54, 399
NdeII	GATC	3 cut(s)	58, 168, 307
NlaIV	GGNNCC	2 cut(s)	383, 464
NmuCI	GTSAC	1 cut(s)	207
PaqCI	CACCTGC	1 cut(s)	393
PasI	CCCWGGG	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	150, 285, 423
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	56, 76, 101, 278
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	68, 376
PspGI	CCWGG	2 cut(s)	68, 376
PspN4I	GGNNCC	2 cut(s)	383, 464
PspPI	GGNCC	2 cut(s)	16, 72
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	33, 318, 492
SatI	GCNGC	4 cut(s)	55, 75, 100, 277
Sau3AI	GATC	3 cut(s)	58, 168, 307
Sau96I	GGNCC	2 cut(s)	16, 72
SchI	GAGTC	1 cut(s)	492
ScrFI	CCNGG	2 cut(s)	70, 378
SetI	ASST	8 cut(s)	18, 27, 84, 127, 143, 234, 249, 407
SfaNI	GCATC	1 cut(s)	439
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	54, 75, 99
StyD4I	CCNGG	2 cut(s)	68, 376
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	5 cut(s)	136, 187, 213, 347, 386
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	315
TauI	GCSGC	3 cut(s)	57, 77, 102
TfiI	GAWTC	3 cut(s)	150, 285, 423
Tru1I	TTAA	3 cut(s)	33, 318, 492
Tru9I	TTAA	3 cut(s)	33, 318, 492
TscAI	CASTG	3 cut(s)	139, 216, 271
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	139, 216, 271
VpaK11BI	GGWCC	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.