Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

39322698 .. 39324279

Gene Structure 1582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCAGGCTTCGGAGAAGAAGTTAGCGAACCCCATGAGGGAAATCAAGGTCCAGAAGCTGGTCCTCAACATCTCTGTAGGCGAGAGCGGTGATCGACTCACCAGAGCCGCGAAGGTGTTGGAGCAACTCAGTGGCCAAACCCCTGTTTTTTCCAAAGCAAGGTACACTGTTCGGAGCTTTGGCATCAGGCGTAATGAGAAGATTGCCTGCTACGTCACTGTCAGGGGTGAAAAGGCCATGTCACTTCTGGAGAGTGGGTTGAAGGTCAAGGAATACGAGTTGCTCCGAAAGAACTTTAGTGATACTGGTTGCTTTGGCTTTGGTATCCAGGAGCACATCGATCTGGGAATCAAGTATGATCCTTCTACTGGTATTTATGGAATGGATTTCTATGTTGTTTTGGAGCGCCCGGGTTATCGTGTGGGTCGTCGTCGTAGATGCAAGTCTCGTGTTGGGATCCAGCACAGGGTCACGAAGGAGGATTCCATGAAATGGTTCCAGGTCAAATATGAGGGTGTGATCCTTAACAAGTCCCAGCAAATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

182

Amino Acids

20.85

Weight (kDa)

9.91

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	10 - 63	1.9e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	67 - 165	1.3e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	58, 492
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	110
AciI	CCGC	2 cut(s)	87, 108
AclWI	GGATC	4 cut(s)	353, 451, 464, 514
AcoI	YGGCCR	1 cut(s)	133
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	6 cut(s)	37, 58, 159, 368, 466, 492
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	327, 498
AluBI	AGCT	2 cut(s)	58, 177
AluI	AGCT	2 cut(s)	58, 177
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	4 cut(s)	353, 451, 464, 514
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	2 cut(s)	133, 234
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	49, 61
AsuC2I	CCSGG	2 cut(s)	410, 411
AsuHPI	GGTGA	3 cut(s)	91, 101, 239
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	49, 61
BalI	TGGCCA	1 cut(s)	135
BamHI	GGATCC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	336
BciT130I	CCWGG	2 cut(s)	329, 500
BciVI	GTATCC	1 cut(s)	335
BcnI	CCSGG	2 cut(s)	410, 411
BcoDI	GTCTC	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	4 cut(s)	329, 410, 411, 500
Bme18I	GGWCC	2 cut(s)	49, 61
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	49, 61
BmiI	GGNNCC	2 cut(s)	458, 497
BmrFI	CCNGG	4 cut(s)	329, 410, 411, 500
BmsI	GCATC	2 cut(s)	192, 428
BpmI	CTGGAG	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	410, 411
Bsa29I	ATCGAT	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	409
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 242, 272
Bsc4I	CCNNNNNNNGG	6 cut(s)	37, 58, 159, 368, 466, 492
Bse1I	ACTGG	2 cut(s)	310, 373
BseBI	CCWGG	2 cut(s)	329, 500
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	409
BseLI	CCNNNNNNNGG	6 cut(s)	37, 58, 159, 368, 466, 492
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	310, 373
BseYI	CCCAGC	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	135, 236
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	6 cut(s)	37, 58, 159, 368, 466, 492
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	135, 236
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	91, 340, 358, 456, 519
BspACI	CCGC	2 cut(s)	87, 108
BspANI	GGCC	2 cut(s)	135, 236
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	458, 497
BspPI	GGATC	4 cut(s)	353, 451, 464, 514
BsrBI	CCGCTC	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	310, 373
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	5 cut(s)	91, 340, 358, 456, 519
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	329, 500
Bst4CI	ACNGT	2 cut(s)	169, 220
BstC8I	GCNNGC	2 cut(s)	6, 208
BstDEI	CTNAG	2 cut(s)	128, 546
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	5 cut(s)	94, 343, 361, 459, 522
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	5 cut(s)	91, 340, 358, 456, 519
BstNI	CCWGG	2 cut(s)	329, 500
BstSCI	CCNGG	4 cut(s)	327, 408, 409, 498
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	135, 236
BsuTUI	ATCGAT	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	136, 165, 216
Cac8I	GCNNGC	2 cut(s)	6, 208
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	49, 61
Cfr9I	CCCGGG	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	3 cut(s)	34, 238, 487
CviJI	RGCY	7 cut(s)	8, 58, 107, 135, 177, 236, 318
CviKI_1	RGCY	7 cut(s)	8, 58, 107, 135, 177, 236, 318
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	128, 546
DpnI	GATC	5 cut(s)	93, 342, 360, 458, 521
DpnII	GATC	5 cut(s)	91, 340, 358, 456, 519
EaeI	YGGCCR	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	49, 61
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	327, 498
FaeI	CATG	3 cut(s)	37, 241, 490
FaiI	YATR	7 cut(s)	35, 239, 357, 378, 393, 488, 510
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	3 cut(s)	33, 237, 486
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	538
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	2 cut(s)	135, 236
HapII	CCGG	1 cut(s)	410
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	3 cut(s)	37, 241, 490
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	96, 348, 482
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	3 cut(s)	91, 101, 239
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	13, 174, 287
Hpy188III	TCNNGA	3 cut(s)	52, 248, 472
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	2 cut(s)	432, 435
HpyAV	CCTTC	4 cut(s)	106, 256, 372, 469
HpyCH4III	ACNGT	2 cut(s)	169, 220
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	4, 441
HpyF3I	CTNAG	2 cut(s)	128, 546
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	37, 241, 490
HspAI	GCGC	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	91, 340, 358, 456, 519
LmnI	GCTCC	5 cut(s)	121, 174, 288, 331, 403
LweI	GCATC	2 cut(s)	192, 428
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	214, 240, 469
MalI	GATC	5 cut(s)	93, 342, 360, 458, 521
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	5 cut(s)	91, 340, 358, 456, 519
MboII	GAAGA	2 cut(s)	28, 211
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	135
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	30, 74, 472, 505
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	4 cut(s)	329, 410, 411, 500
MvaI	CCWGG	2 cut(s)	329, 500
MvnI	CGCG	1 cut(s)	110
NciI	CCSGG	2 cut(s)	410, 411
NdeII	GATC	5 cut(s)	91, 340, 358, 456, 519
NlaIII	CATG	3 cut(s)	37, 241, 490
NlaIV	GGNNCC	2 cut(s)	458, 497
NmuCI	GTSAC	3 cut(s)	214, 240, 469
PcsI	WCGNNNNNNNCGW	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	348, 482
PflMI	CCANNNNNTGG	2 cut(s)	58, 492
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	327, 498
PspFI	CCCAGC	1 cut(s)	534
PspGI	CCWGG	2 cut(s)	327, 498
PspN4I	GGNNCC	2 cut(s)	458, 497
PspPI	GGNCC	2 cut(s)	49, 61
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	5 cut(s)	91, 340, 358, 456, 519
Sau96I	GGNCC	2 cut(s)	49, 61
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	4 cut(s)	329, 410, 411, 500
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	8 cut(s)	51, 60, 117, 164, 179, 216, 267, 504
SfaNI	GCATC	2 cut(s)	192, 428
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	49, 61
SmaI	CCCGGG	1 cut(s)	411
SsiI	CCGC	2 cut(s)	87, 108
StyD4I	CCNGG	4 cut(s)	327, 408, 409, 498
TaaI	ACNGT	2 cut(s)	169, 220
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	94, 339
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	348, 482
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	3 cut(s)	136, 172, 223
TseFI	GTSAC	3 cut(s)	214, 240, 469
Tsp45I	GTSAC	3 cut(s)	214, 240, 469
TspDTI	ATGAA	1 cut(s)	503
TspMI	CCCGGG	1 cut(s)	409
TspRI	CASTG	3 cut(s)	136, 172, 223
Van91I	CCANNNNNTGG	2 cut(s)	58, 492
VpaK11BI	GGWCC	2 cut(s)	49, 61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmaI	CCCGGG	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.