Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

3132263 .. 3134969

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G065200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTCTCCTCTCTCTCCTCTTTCTCTCTCTCTTCATGTTTATTGGAATTTCTGTGCTGTTTTTATTGTTGTGGTTTTTCTGATGATGTTGTTTTTGTGTGTCAAATTCAGGCGTCGGAGAAGAAGCTGGCGAATCCCATGAGGGAAATCAAAGTCCAGAAGCTCGTCCTCAACATCTCTGTCGGAGAAAGTGGTGATCGACTCACCAGAGCCGCCAAGGTCTTGGAACAACTCAGTGGCCAAACCCCTGTCTTCTCCAAAGCTCGGTACACGGTGCGATCCTTCGGTATCAGGCGTAATGAGAAGATTGCCTGCTACGTGACTGTGAGAGGCGACAAGGCAATGCAACTTCTGGAGAGTGGACTGAAGGTCAAGGAATACGAGCTCTTGCGGAGGAACTTCAGTGACACCGGCTGCTTCGGCTTCGGTATTCAGGAACATATCGATCTTGGGATCAAGTATGACCCTTCAACTGGTATATATGGCATGGACTTTTTTGTTGTTTTAGAGCGCCCAGGATACCGTGTTGGTCGTCGTCGCAGATGCAAGTCGCGTGTTGGAATTCAGCACAGGGTTACCAAGGAGGATGCAATGAAGTGGTTCCAGGTCAAATATGAAGGGGTCATTCTTAACAAGTCCCAAAATATTGTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

219

Amino Acids

24.82

Weight (kDa)

9.38

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	553
AciI	CCGC	2 cut(s)	213, 391
AclWI	GGATC	2 cut(s)	273, 461
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	3 cut(s)	47, 105, 561
AcuI	CTGAAG	2 cut(s)	385, 386
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	264, 473
AgsI	TTSAA	1 cut(s)	471
AhdI	GACNNNNNGTC	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	514, 603
AluBI	AGCT	4 cut(s)	127, 163, 263, 385
AluI	AGCT	4 cut(s)	127, 163, 263, 385
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	273, 461
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	3 cut(s)	47, 105, 561
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	196, 206
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	516, 605
BciVI	GTATCC	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	655
BfoI	RGCGCY	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	2 cut(s)	213, 415
BlsI	GCNGC	2 cut(s)	214, 416
Bme1390I	CCNGG	2 cut(s)	516, 605
BmeRI	GACNNNNNGTC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	2 cut(s)	516, 605
BmsI	GCATC	2 cut(s)	533, 577
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	216, 514, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 473
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	2 cut(s)	348, 597
BseBI	CCWGG	2 cut(s)	516, 605
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	216, 514, 579
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	2 cut(s)	264, 473
BseMI	GCAATG	2 cut(s)	348, 597
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	264, 473
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	4 cut(s)	196, 278, 445, 453
BspACI	CCGC	2 cut(s)	213, 391
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	273, 461
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	2 cut(s)	348, 597
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	216, 514, 579
BssMI	GATC	4 cut(s)	196, 278, 445, 453
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	2 cut(s)	216, 579
Bst2UI	CCWGG	2 cut(s)	516, 605
Bst4CI	ACNGT	3 cut(s)	274, 325, 524
Bst6I	CTCTTC	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	129, 313
BstDEI	CTNAG	1 cut(s)	233
BstEII	GGTNACC	1 cut(s)	574
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	4 cut(s)	199, 281, 448, 456
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	4 cut(s)	196, 278, 445, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	2 cut(s)	516, 605
BstPI	GGTNACC	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	514, 603
BstUI	CGCG	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	2 cut(s)	241, 409
Cac8I	GCNNGC	2 cut(s)	129, 313
CfoI	GCGC	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	444
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	36, 139, 487
CviJI	RGCY	8 cut(s)	127, 163, 212, 240, 263, 385, 414, 423
CviKI_1	RGCY	8 cut(s)	127, 163, 212, 240, 263, 385, 414, 423
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	4 cut(s)	198, 280, 447, 455
DpnII	GATC	4 cut(s)	196, 278, 445, 453
DriI	GACNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	216, 579
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	385, 386
Eco91I	GGTNACC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	514, 603
EcoT14I	CCWWGG	2 cut(s)	216, 579
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	216, 579
FaeI	CATG	3 cut(s)	39, 142, 490
FaiI	YATR	9 cut(s)	37, 140, 441, 462, 479, 481, 483, 488, 615
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	3 cut(s)	35, 138, 486
Fnu4HI	GCNGC	2 cut(s)	213, 415
FokI	GGATG	1 cut(s)	599
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	213, 415
FspBI	CTAG	1 cut(s)	655
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	2 cut(s)	213, 415
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	39, 142, 490
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	2 cut(s)	133, 201
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	2 cut(s)	196, 206
Hpy166II	GTNNAC	3 cut(s)	270, 362, 652
Hpy188I	TCNGA	3 cut(s)	82, 118, 185
Hpy188III	TCNNGA	3 cut(s)	157, 353, 434
Hpy8I	GTNNAC	3 cut(s)	270, 362, 652
Hpy99I	CGWCG	3 cut(s)	118, 537, 540
HpyAV	CCTTC	4 cut(s)	292, 361, 477, 611
HpyCH4III	ACNGT	3 cut(s)	274, 325, 524
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	346, 546, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	39, 142, 490
HspAI	GCGC	1 cut(s)	511
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	4 cut(s)	196, 278, 445, 453
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	2 cut(s)	533, 577
MaeI	CTAG	1 cut(s)	655
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	319, 404, 574
MalI	GATC	4 cut(s)	198, 280, 447, 455
MboI	GATC	4 cut(s)	196, 278, 445, 453
MboII	GAAGA	4 cut(s)	24, 133, 244, 316
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	3 cut(s)	47, 105, 561
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	3 cut(s)	96, 163, 538
MnlI	CCTC	7 cut(s)	19, 28, 135, 179, 323, 387, 577
Mox20I	TGGCCA	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	630, 651
Msp20I	TGGCCA	1 cut(s)	240
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	516, 605
MvaI	CCWGG	2 cut(s)	516, 605
MvnI	CGCG	1 cut(s)	553
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeII	GATC	4 cut(s)	196, 278, 445, 453
NlaIII	CATG	3 cut(s)	39, 142, 490
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	2 cut(s)	319, 404
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	214, 416
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Ppu21I	YACGTR	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	514, 603
PspEI	GGTNACC	1 cut(s)	574
PspGI	CCWGG	2 cut(s)	514, 603
PspN4I	GGNNCC	1 cut(s)	602
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	630, 651
SatI	GCNGC	2 cut(s)	213, 415
Sau3AI	GATC	4 cut(s)	196, 278, 445, 453
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	516, 605
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	8 cut(s)	129, 165, 222, 265, 321, 372, 387, 609
SfaNI	GCATC	2 cut(s)	533, 577
Sse9I	AATT	3 cut(s)	47, 105, 561
SsiI	CCGC	2 cut(s)	213, 391
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	1 cut(s)	655
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	514, 603
StyI	CCWWGG	2 cut(s)	216, 579
TaaI	ACNGT	3 cut(s)	274, 325, 524
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	199, 444
TasI	AATT	3 cut(s)	47, 105, 561
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	630, 651
Tru9I	TTAA	2 cut(s)	630, 651
TscAI	CASTG	2 cut(s)	241, 409
TseFI	GTSAC	2 cut(s)	319, 404
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	2 cut(s)	319, 404
TspDTI	ATGAA	3 cut(s)	24, 608, 630
TspRI	CASTG	2 cut(s)	241, 409
XapI	RAATTY	3 cut(s)	47, 105, 561
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.