Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

7555131 .. 7557100

Gene Structure 1970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGTCGGAGAAGAAGCTCGCGAACCCCATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAGGGCCGCCAAGGTCTTGGAGCAACTCAGCGGCCAGACCCCTGTTTTCTCCAAAGCTCGGTACACTGTGAGGTCTTTCGGAATCAGGCGTAATGAGAAGATCGCTTGCTATGTTACTGTTAGGGGAGATAAGGCAATGTCACTGTTGGAGAGTGGGCTCAAGGTGAAGGAGTATGAGCTTTTGCGTAAGAACTTCAGTGACACTGGCTGCTTTGGATTCGGTATTCAGGAGCATATTGATCTTGGAATTAAGTATGACCCTTCCACCGGTATCTACGGTATGGACTTCTATGTTGTTCTTGAGCGCCCAGGGTACCGTGTTGGCCGTCGTCGCAGGTGCAAGGCCCGAGTTGGAATTCAACACAGAGTTACAAAGGATGATGCAATGAAGTGGTTCCAAGTGAAATATGAGGGAGTCATCCTTAACAAGTCCCAAGCAATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

181

Amino Acids

20.61

Weight (kDa)

9.91

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.9e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	2.6e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	423
Acc36I	ACCTGC	1 cut(s)	423
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	84, 105, 129
AcoI	YGGCCR	2 cut(s)	130, 421
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	161, 413
AfiI	CCNNNNNNNGG	3 cut(s)	34, 156, 365
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	98, 406
AluBI	AGCT	4 cut(s)	19, 55, 155, 277
AluI	AGCT	4 cut(s)	19, 55, 155, 277
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	4 cut(s)	102, 130, 421, 441
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	1 cut(s)	453
AsiGI	ACCGGT	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	3 cut(s)	46, 102, 442
AsuHPI	GGTGA	2 cut(s)	88, 274
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	100, 408
BcoDI	GTCTC	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	4 cut(s)	85, 105, 130, 307
BlsI	GCNGC	4 cut(s)	86, 106, 131, 308
Bme1390I	CCNGG	2 cut(s)	100, 408
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	3 cut(s)	46, 102, 442
BmiI	GGNNCC	2 cut(s)	413, 494
BmrFI	CCNGG	2 cut(s)	100, 408
BmsI	GCATC	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	242, 419
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	99, 108, 406, 407
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 156, 365
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	2 cut(s)	240, 489
BseBI	CCWGG	2 cut(s)	100, 408
BseDI	CCNNGG	4 cut(s)	99, 108, 406, 407
BseGI	GGATG	2 cut(s)	481, 516
BseLI	CCNNNNNNNGG	3 cut(s)	34, 156, 365
BseMI	GCAATG	2 cut(s)	240, 489
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	4 cut(s)	104, 132, 423, 443
BshNI	GGYRCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	3 cut(s)	34, 156, 365
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	4 cut(s)	104, 132, 423, 443
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	88, 198, 337
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	3 cut(s)	84, 105, 129
BspANI	GGCC	4 cut(s)	104, 132, 423, 443
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	413, 494
BspMI	ACCTGC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	240, 489
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	4 cut(s)	99, 108, 406, 407
BssMI	GATC	3 cut(s)	88, 198, 337
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	100, 408
Bst4CI	ACNGT	5 cut(s)	166, 217, 243, 377, 416
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	21, 205
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	481, 516
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	3 cut(s)	91, 201, 340
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	88, 198, 337
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 429
BstNI	CCWGG	2 cut(s)	100, 408
BstSCI	CCNGG	2 cut(s)	98, 406
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	104, 132, 423, 443
BtsCI	GGATG	2 cut(s)	481, 516
BtsIMutI	CAGTG	4 cut(s)	162, 239, 300, 301
BtuMI	TCGCGA	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	21, 205
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	46, 102, 442
Csp6I	GTAC	2 cut(s)	160, 412
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	1 cut(s)	31
CviQI	GTAC	2 cut(s)	160, 412
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	90, 200, 339
DpnII	GATC	3 cut(s)	88, 198, 337
EaeI	YGGCCR	2 cut(s)	130, 421
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	444
EcoRI	GAATTC	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	98, 406
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	34
FaiI	YATR	8 cut(s)	32, 210, 273, 333, 354, 380, 390, 507
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	85, 105, 130, 307
FokI	GGATG	2 cut(s)	488, 503
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	85, 105, 130, 307
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	4 cut(s)	85, 105, 130, 307
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	4 cut(s)	104, 132, 423, 443
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	180, 315, 513
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	88, 274
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	10, 179
Hpy188III	TCNNGA	4 cut(s)	22, 49, 326, 398
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	4 cut(s)	10, 77, 429, 432
HpyAV	CCTTC	2 cut(s)	259, 369
HpyCH4III	ACNGT	5 cut(s)	166, 217, 243, 377, 416
HpyCH4V	TGCA	2 cut(s)	438, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 429
HpyF3I	CTNAG	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	88, 198, 337
LmnI	GCTCC	2 cut(s)	118, 328
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	469
MaeIII	GTNAC	4 cut(s)	211, 237, 296, 466
MalI	GATC	3 cut(s)	90, 200, 339
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	3 cut(s)	88, 198, 337
MboII	GAAGA	2 cut(s)	25, 208
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	345, 453, 537
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	2 cut(s)	225, 430
MnlI	CCTC	4 cut(s)	27, 71, 162, 502
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	2 cut(s)	348, 522
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	100, 408
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	100, 408
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	84, 429
NdeII	GATC	3 cut(s)	88, 198, 337
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	413, 494
NmuCI	GTSAC	2 cut(s)	237, 296
NruI	TCGCGA	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	423
PasI	CCCWGGG	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	180, 315
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	86, 106, 131, 308
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	98, 406
PspGI	CCWGG	2 cut(s)	98, 406
PspN4I	GGNNCC	2 cut(s)	413, 494
PspPI	GGNCC	3 cut(s)	46, 102, 442
PvuI	CGATCG	1 cut(s)	91
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	2 cut(s)	161, 413
RsaNI	GTAC	2 cut(s)	160, 412
SaqAI	TTAA	2 cut(s)	348, 522
SatI	GCNGC	4 cut(s)	85, 105, 130, 307
Sau3AI	GATC	3 cut(s)	88, 198, 337
Sau96I	GGNCC	3 cut(s)	46, 102, 442
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	2 cut(s)	100, 408
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	9 cut(s)	21, 48, 57, 114, 157, 173, 264, 279, 437
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	257, 398
SmoI	CTYRAG	2 cut(s)	257, 398
Sse9I	AATT	3 cut(s)	345, 453, 537
SsiI	CCGC	3 cut(s)	84, 105, 129
StyD4I	CCNGG	2 cut(s)	98, 406
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	5 cut(s)	166, 217, 243, 377, 416
TasI	AATT	3 cut(s)	345, 453, 537
TauI	GCSGC	3 cut(s)	87, 107, 132
TfiI	GAWTC	2 cut(s)	180, 315
Tru1I	TTAA	2 cut(s)	348, 522
Tru9I	TTAA	2 cut(s)	348, 522
TscAI	CASTG	4 cut(s)	169, 246, 301, 307
TseFI	GTSAC	2 cut(s)	237, 296
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	2 cut(s)	237, 296
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	4 cut(s)	169, 246, 301, 307
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.