Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

10302163 .. 10303432

Gene Structure 1270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCATCGGAGAAGAAGCTCTCGAACCCTATGAGGGATATTAAGGTCCAGAAGCTAGTTCTTAACATCTCTGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAACAGCTCAGTGGTCAGACTCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTCGGTATCAGGCGTAATGAAAAGATTGCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGCTTGAAAGTGAAGGAATACGAGCTGTTGAGGAGGAACTTCAGTGACACTGGCTGCTTCGGATTCGGTATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCCTTCTACCGGTATCTACGGTATGGATTTCTACGTTGTTCTTGAACGTCCAGGATACCGTGTGGCCCGTCGCCGTAGATGCAAGACTCGCGTTGGTATTCAACATAGAGTTACCAAGGATGATGCCATGAAGTGGTTCCAAGTTAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

182

Amino Acids

20.86

Weight (kDa)

9.94

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.1e-20	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	1.2e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	489
AccII	CGCG	1 cut(s)	447
AclWI	GGATC	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	34, 365, 489
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	259, 401, 458
AjnI	CCWGG	2 cut(s)	324, 406
AluBI	AGCT	5 cut(s)	19, 55, 124, 241, 277
AluI	AGCT	5 cut(s)	19, 55, 124, 241, 277
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	98, 534
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	2 cut(s)	238, 306
AsiGI	ACCGGT	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	46, 421
AsuHPI	GGTGA	4 cut(s)	89, 98, 205, 236
AvaII	GGWCC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	250, 293
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	2 cut(s)	326, 408
BciVI	GTATCC	2 cut(s)	332, 404
BcoDI	GTCTC	2 cut(s)	98, 534
BfaI	CTAG	1 cut(s)	56
BfuI	GTATCC	2 cut(s)	332, 404
BisI	GCNGC	2 cut(s)	239, 307
BlsI	GCNGC	2 cut(s)	240, 308
Bme1390I	CCNGG	2 cut(s)	326, 408
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 421
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	2 cut(s)	326, 408
BmsI	GCATC	3 cut(s)	14, 425, 469
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
BpuEI	CTTGAG	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	108, 471
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 365, 489
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	307, 547
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	326, 408
BseDI	CCNNGG	2 cut(s)	108, 471
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	3 cut(s)	34, 365, 489
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	139, 545
BseNI	ACTGG	2 cut(s)	307, 547
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	250, 293
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	3 cut(s)	34, 365, 489
BsmAI	GTCTC	2 cut(s)	98, 534
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	88, 337, 355
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	2 cut(s)	138, 544
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	307, 547
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	108, 471
BssMI	GATC	3 cut(s)	88, 337, 355
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	2 cut(s)	108, 471
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	326, 408
Bst4CI	ACNGT	4 cut(s)	166, 217, 377, 416
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	125, 150, 531
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	3 cut(s)	91, 340, 358
BstMAI	GTCTC	2 cut(s)	98, 534
BstMBI	GATC	3 cut(s)	88, 337, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 444
BstNI	CCWGG	2 cut(s)	326, 408
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	324, 406
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	250, 293
BstV2I	GAAGAC	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuI	GTATCC	2 cut(s)	332, 404
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	5 cut(s)	133, 162, 300, 301, 540
Cac8I	GCNNGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	46, 421
Csp6I	GTAC	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	1 cut(s)	484
CviJI	RGCY	8 cut(s)	19, 55, 124, 241, 255, 277, 306, 422
CviKI_1	RGCY	8 cut(s)	19, 55, 124, 241, 255, 277, 306, 422
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	125, 150, 531
DpnI	GATC	3 cut(s)	90, 339, 357
DpnII	GATC	3 cut(s)	88, 337, 355
Eco130I	CCWWGG	2 cut(s)	108, 471
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	324, 406
EcoT14I	CCWWGG	2 cut(s)	108, 471
ErhI	CCWWGG	2 cut(s)	108, 471
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	487
FaiI	YATR	7 cut(s)	32, 210, 354, 380, 462, 485, 507
FatI	CATG	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	239, 307
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	239, 307
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	239, 307
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	1 cut(s)	487
HinfI	GANTC	4 cut(s)	136, 315, 345, 442
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	4 cut(s)	89, 98, 205, 236
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	10, 135, 314, 534
Hpy188III	TCNNGA	4 cut(s)	22, 49, 245, 398
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	4 cut(s)	223, 259, 369, 503
HpyCH4III	ACNGT	4 cut(s)	166, 217, 377, 416
HpyCH4IV	ACGT	2 cut(s)	390, 403
HpyCH4V	TGCA	2 cut(s)	238, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 444
HpyF3I	CTNAG	3 cut(s)	125, 150, 531
HpySE526I	ACGT	2 cut(s)	390, 403
Hsp92II	CATG	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	88, 337, 355
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	2 cut(s)	250, 293
LweI	GCATC	3 cut(s)	14, 425, 469
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	2 cut(s)	390, 403
MaeIII	GTNAC	3 cut(s)	211, 296, 466
MalI	GATC	3 cut(s)	90, 339, 357
MboI	GATC	3 cut(s)	88, 337, 355
MboII	GAAGA	2 cut(s)	25, 136
MhlI	GDGCHC	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	130, 436
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	8 cut(s)	27, 115, 150, 162, 215, 276, 279, 530
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	3 cut(s)	42, 63, 501
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	326, 408
MvaI	CCWGG	2 cut(s)	326, 408
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	435, 444
NdeII	GATC	3 cut(s)	88, 337, 355
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	2 cut(s)	211, 296
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	315, 345
PflMI	CCANNNNNTGG	1 cut(s)	489
PfoI	TCCNGGA	2 cut(s)	324, 406
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	240, 308
PleI	GAGTC	2 cut(s)	130, 436
PpsI	GAGTC	2 cut(s)	130, 436
PshAI	GACNNNNGTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	324, 406
PspGI	CCWGG	2 cut(s)	324, 406
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	2 cut(s)	46, 421
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	3 cut(s)	42, 63, 501
SatI	GCNGC	2 cut(s)	239, 307
Sau3AI	GATC	3 cut(s)	88, 337, 355
Sau96I	GGNCC	2 cut(s)	46, 421
SchI	GAGTC	2 cut(s)	130, 436
ScrFI	CCNGG	2 cut(s)	326, 408
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	3 cut(s)	14, 425, 469
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	324, 406
StyI	CCWWGG	2 cut(s)	108, 471
TaaI	ACNGT	4 cut(s)	166, 217, 377, 416
TaiI	ACGT	2 cut(s)	393, 406
TaqI	TCGA	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	315, 345
Tru1I	TTAA	3 cut(s)	42, 63, 501
Tru9I	TTAA	3 cut(s)	42, 63, 501
TscAI	CASTG	5 cut(s)	133, 169, 301, 307, 547
TseFI	GTSAC	2 cut(s)	211, 296
TseI	GCWGC	2 cut(s)	238, 306
Tsp45I	GTSAC	2 cut(s)	211, 296
TspDTI	ATGAA	3 cut(s)	207, 500, 522
TspRI	CASTG	5 cut(s)	133, 169, 301, 307, 547
Van91I	CCANNNNNTGG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.