Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

9541464 .. 9544024

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTTCAGAGAAGAAGTTAGCGAACCCCATGAGGGAGATCAAGGTCCAGAAGCTGGTCCTAAACATCTCTGTTGGTGAGAGTGGAGATCGACTCACCAGAGCCGCGAAGGTGTTGGAGCAACTCAGCGGACAAACACCCGTTTTCTCCAAAGCACGGTACACTGTTCGATCCTTCGGTATCAGGCGTAATGAGAAGATTGCCTGCTATGTCACTGTTAGGGGTGACAAGGCCATGCAACTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGTTGCTAAGAAGGAACTTTAGTGATACTGGTTGTTTTGGATTTGGTATCCAGGAGCACATTGATTTGGGAATCAAGTACGATCCTTCAACTGGTATTTATGGGATGGATTTCTTTGTTGTTTTGGAGCGTCCGGGTTATCGTGTTGGCCGTCGTCGTAGATGCAAGTCTCGTGTTGGGATCCAGCACAGGGTCACCAAGGATGATGCCATGAAATGGTTCCAGGTCAAATATGAGGGTGTGATCCTTAACAAGTCCCAGCAGCTTTCAGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

184

Amino Acids

20.89

Weight (kDa)

9.97

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	55, 489
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	105, 129
AclWI	GGATC	5 cut(s)	165, 350, 448, 461, 511
AcoI	YGGCCR	1 cut(s)	421
AfaI	GTAC	2 cut(s)	161, 353
AfiI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
AgsI	TTSAA	2 cut(s)	259, 363
AjnI	CCWGG	2 cut(s)	324, 495
AluBI	AGCT	3 cut(s)	55, 538, 545
AluI	AGCT	3 cut(s)	55, 538, 545
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	5 cut(s)	165, 350, 448, 461, 511
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	231, 421
ApeKI	GCWGC	1 cut(s)	535
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	46, 58
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	5 cut(s)	88, 89, 236, 274, 460
AvaII	GGWCC	2 cut(s)	46, 58
BamHI	GGATCC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	326, 497
BciVI	GTATCC	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	105, 536
BlsI	GCNGC	2 cut(s)	106, 537
Bme1390I	CCNGG	3 cut(s)	326, 408, 497
Bme18I	GGWCC	2 cut(s)	46, 58
BmgT120I	GGNCC	2 cut(s)	46, 58
BmiI	GGNNCC	2 cut(s)	455, 494
BmrFI	CCNGG	3 cut(s)	326, 408, 497
BmsI	GCATC	2 cut(s)	425, 469
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpuMI	CCSGG	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
Bse1I	ACTGG	2 cut(s)	307, 370
BseBI	CCWGG	2 cut(s)	326, 497
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	384, 481
BseLI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	307, 370
BseXI	GCAGC	1 cut(s)	547
BseYI	CCCAGC	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	233, 423
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	233, 423
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
BspACI	CCGC	2 cut(s)	105, 129
BspANI	GGCC	2 cut(s)	233, 423
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	455, 494
BspPI	GGATC	5 cut(s)	165, 350, 448, 461, 511
BsrI	ACTGG	2 cut(s)	307, 370
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	326, 497
Bst4CI	ACNGT	3 cut(s)	159, 166, 217
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	125, 281
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	384, 481
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	6 cut(s)	42, 91, 173, 358, 456, 519
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
BstNI	CCWGG	2 cut(s)	326, 497
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	3 cut(s)	324, 406, 495
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	233, 423
BtsCI	GGATG	2 cut(s)	384, 481
BtsIMutI	CAGTG	2 cut(s)	162, 213
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	46, 58
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	160, 352
CviAII	CATG	3 cut(s)	31, 235, 484
CviJI	RGCY	7 cut(s)	5, 55, 104, 233, 423, 538, 545
CviKI_1	RGCY	7 cut(s)	5, 55, 104, 233, 423, 538, 545
CviQI	GTAC	2 cut(s)	160, 352
DdeI	CTNAG	2 cut(s)	125, 281
DpnI	GATC	6 cut(s)	41, 90, 172, 357, 455, 518
DpnII	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
EaeI	YGGCCR	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	2 cut(s)	46, 58
Eco91I	GGTNACC	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	324, 495
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	34, 238, 487
FaiI	YATR	7 cut(s)	32, 210, 236, 273, 375, 485, 507
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	3 cut(s)	30, 234, 483
Fnu4HI	GCNGC	2 cut(s)	105, 536
FokI	GGATG	2 cut(s)	391, 488
Fsp4HI	GCNGC	2 cut(s)	105, 536
FspBI	CTAG	1 cut(s)	550
GluI	GCNGC	2 cut(s)	105, 536
GsaI	CCCAGC	1 cut(s)	535
HaeIII	GGCC	2 cut(s)	233, 423
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	34, 238, 487
HinfI	GANTC	2 cut(s)	93, 345
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	5 cut(s)	88, 89, 236, 274, 460
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	2 cut(s)	429, 432
HpyAV	CCTTC	6 cut(s)	103, 184, 253, 259, 279, 369
HpyCH4III	ACNGT	3 cut(s)	159, 166, 217
HpyCH4V	TGCA	2 cut(s)	238, 438
HpyF3I	CTNAG	2 cut(s)	125, 281
Hsp92II	CATG	3 cut(s)	34, 238, 487
Kzo9I	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
LmnI	GCTCC	3 cut(s)	118, 328, 400
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	2 cut(s)	425, 469
MaeI	CTAG	1 cut(s)	550
MaeIII	GTNAC	3 cut(s)	211, 224, 466
MalI	GATC	6 cut(s)	41, 90, 172, 357, 455, 518
MboI	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
MboII	GAAGA	2 cut(s)	25, 208
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	27, 502
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	3 cut(s)	326, 408, 497
MvaI	CCWGG	2 cut(s)	326, 497
MvnI	CGCG	1 cut(s)	107
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
NlaIII	CATG	3 cut(s)	34, 238, 487
NlaIV	GGNNCC	2 cut(s)	455, 494
NmuCI	GTSAC	3 cut(s)	211, 224, 466
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	345
PflMI	CCANNNNNTGG	2 cut(s)	55, 489
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	106, 537
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	324, 495
PspEI	GGTNACC	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	2 cut(s)	324, 495
PspN4I	GGNNCC	2 cut(s)	455, 494
PspPI	GGNCC	2 cut(s)	46, 58
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	161, 353
RsaNI	GTAC	2 cut(s)	160, 352
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	2 cut(s)	105, 536
Sau3AI	GATC	6 cut(s)	39, 88, 170, 355, 453, 516
Sau96I	GGNCC	2 cut(s)	46, 58
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	326, 408, 497
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	7 cut(s)	48, 57, 114, 264, 501, 540, 547
SfaNI	GCATC	2 cut(s)	425, 469
SinI	GGWCC	2 cut(s)	46, 58
SsiI	CCGC	2 cut(s)	105, 129
SspMI	CTAG	1 cut(s)	550
StyD4I	CCNGG	3 cut(s)	324, 406, 495
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	159, 166, 217
TaqI	TCGA	2 cut(s)	91, 169
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	169, 220
TseFI	GTSAC	3 cut(s)	211, 224, 466
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	3 cut(s)	211, 224, 466
TspDTI	ATGAA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	169, 220
Van91I	CCANNNNNTGG	2 cut(s)	55, 489
VpaK11BI	GGWCC	2 cut(s)	46, 58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.