Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

36787693 .. 36789620

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1276900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTCGGAGAGCAAGATGGCGAATCCCATGAGGGAAATCAAGGTTCAGAAGCTCGTCCTCAACATCTCCGTCGGAGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTCTTGGAGCAGCTCAGCGGCCAGACCCCTGTCTTCTCCAAAGCTCGATACACTGTGAGGTCTTTCGGGATCAGGCGTAACGAGAAGATTGCCTGCTACGTGACTGTCCGTGGCGAAAAGGCAATGCAGCTTTTGGAGAGTGGACTGAAGGTCAAGGAATACGAGCTGTTGCGCAGGAACTTCAGCGACACCGGATGCTTTGGTTTCGGTATTCAGGAACACATTGATCTCGGAATCAAGTATGACCCTTCTACTGGTATCTATGGTATGGACTTCTATGTTGTCCTAGAGCGCCCAGGGTACCGTGTGGGACGTCGCCGCAGATGCAAGTCGCGCGTTGGTATTCAGCACAGGGTTACCAAGGAGGACTCGATGAAGTGGTTCCAGGTCAAATATGAAGGAGTCATCCTCAACAAGTCCCAAAATATTACCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

183

Amino Acids

20.82

Weight (kDa)

9.9

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.9e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	1.1e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	427
Acc16I	TGCGCA	1 cut(s)	284
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccII	CGCG	2 cut(s)	445, 447
AciI	CCGC	4 cut(s)	84, 105, 129, 430
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	2 cut(s)	277, 278
AcyI	GRCGYC	2 cut(s)	5, 424
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	365
AhdI	GACNNNNNGTC	1 cut(s)	260
AjnI	CCWGG	2 cut(s)	406, 495
AluBI	AGCT	5 cut(s)	55, 124, 155, 241, 277
AluI	AGCT	5 cut(s)	55, 124, 155, 241, 277
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	121, 238
Asp700I	GAANNNNTTC	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	411
AspLEI	GCGC	3 cut(s)	285, 405, 447
AsuHPI	GGTGA	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	133, 250
BccI	CCATC	1 cut(s)	13
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	408, 497
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	398, 547
BfoI	RGCGCY	1 cut(s)	406
BisI	GCNGC	6 cut(s)	85, 105, 122, 130, 239, 430
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	6 cut(s)	86, 106, 123, 131, 240, 431
Bme1390I	CCNGG	2 cut(s)	408, 497
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	413, 494
BmrFI	CCNGG	2 cut(s)	408, 497
BmsI	GCATC	2 cut(s)	296, 425
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
Bpu1102I	GCTNAGC	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	211
BsaHI	GRCGYC	2 cut(s)	5, 424
BsaJI	CCNNGG	5 cut(s)	108, 220, 406, 407, 471
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	408, 497
BseDI	CCNNGG	5 cut(s)	108, 220, 406, 407, 471
BseGI	GGATG	2 cut(s)	311, 516
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	133, 250
Bsh1236I	CGCG	2 cut(s)	445, 447
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	411
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	303, 543
BslFI	GGGAC	2 cut(s)	435, 514
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	435, 514
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	88, 180, 337
Bsp1720I	GCTNAGC	1 cut(s)	125
BspACI	CCGC	4 cut(s)	84, 105, 129, 430
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	445, 447
BspLI	GGNNCC	2 cut(s)	413, 494
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	5 cut(s)	108, 220, 406, 407, 471
BssMI	GATC	3 cut(s)	88, 180, 337
BssNI	GRCGYC	2 cut(s)	5, 424
BssT1I	CCWWGG	2 cut(s)	108, 471
Bst2UI	CCWGG	2 cut(s)	408, 497
Bst4CI	ACNGT	3 cut(s)	166, 217, 416
BstACI	GRCGYC	2 cut(s)	5, 424
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	311, 516
BstFNI	CGCG	2 cut(s)	445, 447
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	3 cut(s)	285, 405, 447
BstKTI	GATC	3 cut(s)	91, 183, 340
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	88, 180, 337
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 444
BstNI	CCWGG	2 cut(s)	408, 497
BstPAI	GACNNNNGTC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	406, 495
BstUI	CGCG	2 cut(s)	445, 447
BstV1I	GCAGC	2 cut(s)	133, 250
BstV2I	GAAGAC	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	311, 516
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	3 cut(s)	285, 405, 447
Cfr10I	RCCGGY	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	8 cut(s)	55, 104, 124, 132, 155, 241, 277, 546
CviKI_1	RGCY	8 cut(s)	55, 104, 124, 132, 155, 241, 277, 546
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	90, 182, 339
DpnII	GATC	3 cut(s)	88, 180, 337
DriI	GACNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	108, 471
Eco57I	CTGAAG	2 cut(s)	277, 278
Eco91I	GGTNACC	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	406, 495
EcoT14I	CCWWGG	2 cut(s)	108, 471
ErhI	CCWWGG	2 cut(s)	108, 471
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	34
FaiI	YATR	6 cut(s)	32, 354, 375, 380, 390, 507
FaqI	GGGAC	2 cut(s)	435, 514
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	6 cut(s)	85, 105, 122, 130, 239, 430
FokI	GGATG	2 cut(s)	318, 503
Fsp4HI	GCNGC	6 cut(s)	85, 105, 122, 130, 239, 430
FspBI	CTAG	2 cut(s)	398, 547
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	3 cut(s)	284, 404, 446
GluI	GCNGC	6 cut(s)	85, 105, 122, 130, 239, 430
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	303, 543
HhaI	GCGC	3 cut(s)	285, 405, 447
Hin1I	GRCGYC	2 cut(s)	5, 424
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	3 cut(s)	283, 403, 445
HinP1I	GCGC	3 cut(s)	283, 403, 445
HinfI	GANTC	4 cut(s)	25, 345, 479, 513
HpaII	CCGG	2 cut(s)	303, 543
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	4 cut(s)	10, 51, 77, 344
Hpy188III	TCNNGA	2 cut(s)	178, 326
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	3 cut(s)	10, 77, 429
HpyAV	CCTTC	3 cut(s)	253, 369, 503
HpyCH4III	ACNGT	3 cut(s)	166, 217, 416
HpyCH4IV	ACGT	2 cut(s)	210, 424
HpyCH4V	TGCA	2 cut(s)	238, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 444
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	2 cut(s)	210, 424
Hsp92I	GRCGYC	2 cut(s)	5, 424
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	3 cut(s)	283, 403, 445
KpnI	GGTACC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	88, 180, 337
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	2 cut(s)	133, 250
LweI	GCATC	2 cut(s)	296, 425
MaeI	CTAG	2 cut(s)	398, 547
MaeII	ACGT	2 cut(s)	210, 424
MaeIII	GTNAC	3 cut(s)	188, 211, 466
MalI	GATC	3 cut(s)	90, 182, 339
MboI	GATC	3 cut(s)	88, 180, 337
MboII	GAAGA	2 cut(s)	136, 208
MlyI	GAGTC	2 cut(s)	473, 522
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	27, 71, 162, 469, 530
MroXI	GAANNNNTTC	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	2 cut(s)	303, 543
MspR9I	CCNGG	2 cut(s)	408, 497
MvaI	CCWGG	2 cut(s)	408, 497
MvnI	CGCG	2 cut(s)	445, 447
MwoI	GCNNNNNNNGC	2 cut(s)	435, 444
NdeII	GATC	3 cut(s)	88, 180, 337
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	413, 494
NmuCI	GTSAC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	284
PasI	CCCWGGG	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	25, 345
PkrI	GCNGC	6 cut(s)	86, 106, 123, 131, 240, 431
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	2 cut(s)	473, 521
PpsI	GAGTC	2 cut(s)	473, 521
Ppu21I	YACGTR	1 cut(s)	211
PshAI	GACNNNNGTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	406, 495
PspEI	GGTNACC	1 cut(s)	466
PspGI	CCWGG	2 cut(s)	406, 495
PspN4I	GGNNCC	2 cut(s)	413, 494
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SatI	GCNGC	6 cut(s)	85, 105, 122, 130, 239, 430
Sau3AI	GATC	3 cut(s)	88, 180, 337
SchI	GAGTC	2 cut(s)	473, 522
ScrFI	CCNGG	2 cut(s)	408, 497
SfaNI	GCATC	2 cut(s)	296, 425
SsiI	CCGC	4 cut(s)	84, 105, 129, 430
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	398, 547
StyD4I	CCNGG	2 cut(s)	406, 495
StyI	CCWWGG	2 cut(s)	108, 471
TaaI	ACNGT	3 cut(s)	166, 217, 416
TaiI	ACGT	2 cut(s)	213, 427
TaqI	TCGA	2 cut(s)	157, 482
TauI	GCSGC	4 cut(s)	87, 107, 132, 432
TfiI	GAWTC	2 cut(s)	25, 345
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	121, 238
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	500, 522
TspGWI	ACGGA	2 cut(s)	61, 209
TspRI	CASTG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	2 cut(s)	398, 547
ZraI	GACGTC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.