Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

32505711 .. 32508011

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1264500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTGAAGAGAAGAAGTTAGCGAACCCCATGAGGGAGATCAAGGTCCAGAAGCTGGTGCTCAACATCTCCGTCGGTGAGAGCGGAGATAGACTCACGAGAGCCGCCAAGGTGTTGGAGCAACTCAGTGGCCAAACACCCGTTTTCTCCAAAGCGAGGTACACTGTTCGATCCTTTGGTATCAGGCGTAATGAGAAGATTGCCTGTTATGTTACCGTGAGGGGCGACAAGGCGATGCAACTTTTGGAGAGTGGATTGAAGGTCAAGGAATATGAGTTGCTACGAAGGAACTTCAGTGACACTGGTTGTTTTGGATTTGGCATCCAGGAGCACATTGATTTGGGAATCAAGTACGATCCTTCTACTGGTATCTATGGAATGGATTTCTACATTGTTTTGGAGCGTCCAGGTTACCGTGTGGGTCGTCGTCGCAGGTGCAAATCTCGCGTGGGGATCCGGCACAGAGTCACAAAGGATGATGCCATGAAATGGTTCCAGGTCAAGTATGAGGGTGTGATTCTTAACAAGTCGCAGCAGCTCACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

183

Amino Acids

20.91

Weight (kDa)

9.94

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.9e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	2.4e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	423
Acc36I	ACCTGC	1 cut(s)	423
AccB7I	CCANNNNNTGG	2 cut(s)	55, 489
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	1 cut(s)	447
AciI	CCGC	2 cut(s)	84, 105
AclWI	GGATC	4 cut(s)	165, 350, 448, 461
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	2 cut(s)	27, 277
AfaI	GTAC	2 cut(s)	161, 353
AfiI	CCNNNNNNNGG	5 cut(s)	34, 55, 156, 365, 489
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	324, 406, 495
AluBI	AGCT	3 cut(s)	55, 538, 545
AluI	AGCT	3 cut(s)	55, 538, 545
Alw21I	GWGCWC	2 cut(s)	63, 333
AlwI	GGATC	4 cut(s)	165, 350, 448, 461
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	532, 535
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	63, 333
BbvI	GCAGC	1 cut(s)	544
BciT130I	CCWGG	3 cut(s)	326, 408, 497
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	3 cut(s)	105, 533, 536
BlsI	GCNGC	3 cut(s)	106, 534, 537
Bme1390I	CCNGG	3 cut(s)	326, 408, 497
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	455, 494
BmrFI	CCNGG	3 cut(s)	326, 408, 497
BmsI	GCATC	3 cut(s)	225, 330, 469
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 55, 156, 365, 489
Bse1I	ACTGG	2 cut(s)	307, 370
BseBI	CCWGG	3 cut(s)	326, 408, 497
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	321, 481
BseLI	CCNNNNNNNGG	5 cut(s)	34, 55, 156, 365, 489
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	307, 370
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	63, 333
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	5 cut(s)	34, 55, 156, 365, 489
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	63, 333
Bsp143I	GATC	4 cut(s)	39, 170, 355, 453
BspACI	CCGC	2 cut(s)	84, 105
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	455, 494
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	4 cut(s)	165, 350, 448, 461
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	307, 370
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	39, 170, 355, 453
BssSI	CACGAG	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	97
Bst2UI	CCWGG	3 cut(s)	326, 408, 497
Bst4CI	ACNGT	3 cut(s)	166, 217, 416
Bst6I	CTCTTC	1 cut(s)	3
BstDEI	CTNAG	2 cut(s)	125, 546
BstEII	GGTNACC	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	321, 481
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	4 cut(s)	42, 173, 358, 456
BstMBI	GATC	4 cut(s)	39, 170, 355, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	3 cut(s)	326, 408, 497
BstPI	GGTNACC	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	324, 406, 495
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	321, 481
BtsIMutI	CAGTG	4 cut(s)	133, 162, 300, 301
BveI	ACCTGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	160, 352
CviAII	CATG	2 cut(s)	31, 484
CviJI	RGCY	6 cut(s)	5, 55, 104, 132, 538, 545
CviKI_1	RGCY	6 cut(s)	5, 55, 104, 132, 538, 545
CviQI	GTAC	2 cut(s)	160, 352
DdeI	CTNAG	2 cut(s)	125, 546
DpnI	GATC	4 cut(s)	41, 172, 357, 455
DpnII	GATC	4 cut(s)	39, 170, 355, 453
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	27, 277
Eco91I	GGTNACC	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	410
EcoRII	CCWGG	3 cut(s)	324, 406, 495
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	34, 487
FaiI	YATR	6 cut(s)	32, 210, 273, 375, 485, 507
FatI	CATG	2 cut(s)	30, 483
Fnu4HI	GCNGC	3 cut(s)	105, 533, 536
FokI	GGATG	2 cut(s)	308, 488
Fsp4HI	GCNGC	3 cut(s)	105, 533, 536
GluI	GCNGC	3 cut(s)	105, 533, 536
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	34, 487
HinfI	GANTC	4 cut(s)	93, 345, 465, 517
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	49, 97
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	3 cut(s)	77, 429, 432
HpyAV	CCTTC	3 cut(s)	253, 279, 369
HpyCH4III	ACNGT	3 cut(s)	166, 217, 416
HpyCH4V	TGCA	2 cut(s)	238, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	2 cut(s)	125, 546
Hsp92II	CATG	2 cut(s)	34, 487
Kzo9I	GATC	4 cut(s)	39, 170, 355, 453
LmnI	GCTCC	3 cut(s)	118, 328, 400
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	3 cut(s)	225, 330, 469
MaeIII	GTNAC	4 cut(s)	211, 296, 410, 466
MalI	GATC	4 cut(s)	41, 172, 357, 455
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	4 cut(s)	39, 170, 355, 453
MboII	GAAGA	3 cut(s)	20, 25, 208
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	63, 333
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	87, 474
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	27, 150, 213, 502
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	3 cut(s)	326, 408, 497
MvaI	CCWGG	3 cut(s)	326, 408, 497
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	4 cut(s)	39, 170, 355, 453
NlaIII	CATG	2 cut(s)	34, 487
NlaIV	GGNNCC	2 cut(s)	455, 494
NmuCI	GTSAC	2 cut(s)	296, 466
PaqCI	CACCTGC	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	345, 517
PflMI	CCANNNNNTGG	2 cut(s)	55, 489
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	3 cut(s)	106, 534, 537
PleI	GAGTC	2 cut(s)	87, 473
PpsI	GAGTC	2 cut(s)	87, 473
Psp6I	CCWGG	3 cut(s)	324, 406, 495
PspEI	GGTNACC	1 cut(s)	410
PspGI	CCWGG	3 cut(s)	324, 406, 495
PspN4I	GGNNCC	2 cut(s)	455, 494
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	161, 353
RsaNI	GTAC	2 cut(s)	160, 352
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	3 cut(s)	105, 533, 536
Sau3AI	GATC	4 cut(s)	39, 170, 355, 453
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	87, 474
ScrFI	CCNGG	3 cut(s)	326, 408, 497
SduI	GDGCHC	2 cut(s)	63, 333
SfaNI	GCATC	3 cut(s)	225, 330, 469
SinI	GGWCC	1 cut(s)	46
SsiI	CCGC	2 cut(s)	84, 105
StyD4I	CCNGG	3 cut(s)	324, 406, 495
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	166, 217, 416
TaqI	TCGA	1 cut(s)	169
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	345, 517
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	4 cut(s)	133, 169, 301, 307
TseFI	GTSAC	2 cut(s)	296, 466
TseI	GCWGC	2 cut(s)	532, 535
Tsp45I	GTSAC	2 cut(s)	296, 466
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	4 cut(s)	133, 169, 301, 307
Van91I	CCANNNNNTGG	2 cut(s)	55, 489
VpaK11BI	GGWCC	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.